Wall clock time and date at job start Mon Mar 30 2020 00:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99654 * 2 1 4 4 H 1.48509 * 109.47272 * 265.46395 * 3 2 1 5 5 H 1.48501 * 109.47447 * 25.46384 * 3 2 1 6 6 H 1.48500 * 109.47416 * 145.46306 * 3 2 1 7 7 C 1.37874 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00203 * 352.87928 * 7 2 1 9 9 C 1.50707 * 119.99927 * 172.87337 * 7 2 1 10 10 H 1.09001 * 109.47216 * 355.80461 * 9 7 2 11 11 O 1.42897 * 109.47011 * 235.80450 * 9 7 2 12 12 C 1.35690 * 116.99668 * 90.00656 * 11 9 7 13 13 C 1.38679 * 119.65277 * 179.72608 * 12 11 9 14 14 C 1.38988 * 119.04528 * 179.77183 * 13 12 11 15 15 O 1.35749 * 120.81726 * 180.21802 * 14 13 12 16 16 C 1.39438 * 118.36859 * 0.48916 * 14 13 12 17 17 C 1.37821 * 119.21807 * 359.74928 * 16 14 13 18 18 N 1.32050 * 120.89195 * 0.02562 * 17 16 14 19 19 C 1.50693 * 109.46669 * 115.80778 * 9 7 2 20 20 C 1.38235 * 120.00376 * 81.39168 * 19 9 7 21 21 C 1.38237 * 120.00152 * 179.77968 * 20 19 9 22 22 C 1.38231 * 120.00055 * 0.45266 * 21 20 19 23 23 C 1.38238 * 120.00177 * 359.80147 * 22 21 20 24 24 C 1.38239 * 119.99915 * 261.66358 * 19 9 7 25 25 H 0.97002 * 120.00459 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.47872 * 359.97438 * 13 12 11 27 27 H 0.96691 * 114.00071 * 270.27496 * 15 14 13 28 28 H 1.08004 * 120.39392 * 179.77600 * 16 14 13 29 29 H 1.08002 * 119.55264 * 180.02562 * 17 16 14 30 30 H 1.07997 * 119.99828 * 359.97438 * 20 19 9 31 31 H 1.08001 * 119.99575 * 180.27303 * 21 20 19 32 32 H 1.07994 * 119.99953 * 179.83010 * 22 21 20 33 33 H 1.07991 * 120.00144 * 180.02562 * 23 22 21 34 34 H 1.08001 * 119.99917 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5925 1.9912 -1.3958 5 1 1.4018 2.6785 0.6019 6 1 3.4954 1.4700 0.7937 7 6 2.0046 -1.1940 0.0005 8 1 1.4710 -2.1256 0.1169 9 6 3.5029 -1.1990 -0.1614 10 1 3.8526 -0.1820 -0.3391 11 8 3.8593 -2.0259 -1.2710 12 6 3.9367 -1.4267 -2.4859 13 6 4.2837 -2.1763 -3.5998 14 6 4.3545 -1.5507 -4.8389 15 8 4.6863 -2.2509 -5.9535 16 6 4.0818 -0.1850 -4.9081 17 6 3.7486 0.4937 -3.7558 18 7 3.6858 -0.1319 -2.5946 19 6 4.1418 -1.7381 1.0925 20 6 4.2210 -3.1030 1.2960 21 6 4.8111 -3.5976 2.4441 22 6 5.3136 -2.7270 3.3930 23 6 5.2297 -1.3619 3.1920 24 6 4.6435 -0.8675 2.0418 25 1 -0.4851 0.8400 -0.0004 26 1 4.4927 -3.2318 -3.5064 27 1 5.6359 -2.2761 -6.1340 28 1 4.1308 0.3348 -5.8536 29 1 3.5360 1.5515 -3.8033 30 1 3.8247 -3.7831 0.5566 31 1 4.8769 -4.6641 2.6010 32 1 5.7721 -3.1134 4.2912 33 1 5.6226 -0.6818 3.9332 34 1 4.5781 0.1991 1.8847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225606188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:42 Heat of formation + Delta-G solvation = -12.003773 kcal Electronic energy + Delta-G solvation = -20132.842851 eV Core-core repulsion = 16996.638422 eV Total energy + Delta-G solvation = -3136.204429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18006 -38.78116 -37.71748 -36.34609 -33.03940 -31.44988 -30.73948 -30.30134 -29.70248 -27.25974 -23.56670 -23.14728 -22.35041 -21.85402 -20.27485 -18.53843 -17.31782 -16.88259 -16.52059 -15.89733 -15.61171 -15.06149 -14.59969 -14.37235 -14.13667 -13.93068 -13.53432 -13.09588 -12.86208 -12.72546 -12.36860 -12.35049 -11.82138 -11.50944 -11.12097 -10.88745 -10.66670 -10.50358 -9.95445 -9.76912 -9.52169 -9.18450 -8.95613 -8.72008 -8.31498 -8.08684 -7.77890 -6.27489 -4.33491 1.47814 1.66954 1.99676 2.02740 3.27356 3.33118 3.40728 3.72755 4.12394 4.32371 4.41181 4.49825 4.86927 5.12817 5.31389 5.44227 5.46623 5.49822 5.54791 5.66801 5.93147 6.03676 6.13758 6.17465 6.24986 6.43298 6.48282 6.61384 6.63574 6.77435 7.05356 7.11124 7.33730 7.38400 7.61104 7.63679 8.06957 8.32305 8.49409 8.81403 9.34117 10.82669 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.007534 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.859467 B = 3715.401688 C = 4831.352339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.092 3.908 3 Si 0.883 3.117 4 H -0.251 1.251 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.080 0.920 9 C 0.210 3.790 10 H 0.067 0.933 11 O -0.309 6.309 12 C 0.374 3.626 13 C -0.238 4.238 14 C 0.177 3.823 15 O -0.494 6.494 16 C -0.261 4.261 17 C 0.159 3.841 18 N -0.532 5.532 19 C -0.038 4.038 20 C -0.104 4.104 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.122 4.122 24 C -0.125 4.125 25 H 0.269 0.731 26 H 0.140 0.860 27 H 0.392 0.608 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.992 -0.846 -4.086 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.115 4.115 3 Si 0.710 3.290 4 H -0.176 1.176 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.560 4.560 8 H 0.098 0.902 9 C 0.157 3.843 10 H 0.085 0.915 11 O -0.215 6.215 12 C 0.195 3.805 13 C -0.260 4.260 14 C 0.125 3.875 15 O -0.304 6.304 16 C -0.282 4.282 17 C 0.002 3.998 18 N -0.257 5.257 19 C -0.038 4.038 20 C -0.123 4.123 21 C -0.143 4.143 22 C -0.162 4.162 23 C -0.140 4.140 24 C -0.143 4.143 25 H 0.079 0.921 26 H 0.157 0.843 27 H 0.249 0.751 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.033 -0.678 -3.264 11.526 hybrid contribution 0.716 0.607 -0.603 1.115 sum 11.749 -0.072 -3.867 12.369 Atomic orbital electron populations 1.69919 1.06618 1.27755 1.46855 1.25053 0.94701 0.99471 0.92254 0.86793 0.79442 0.82584 0.80145 1.17571 1.22193 1.19265 1.21038 0.88119 0.95555 1.51335 0.90219 1.19380 0.95516 0.90769 0.78647 0.91547 1.86294 1.81273 1.40396 1.13577 1.19616 0.86816 0.87230 0.86867 1.21277 1.12120 1.02077 0.90517 1.18347 0.95003 0.89283 0.84840 1.84749 1.29507 1.74176 1.42000 1.22063 1.11337 0.94201 1.00583 1.22263 0.91470 0.99645 0.86448 1.67505 1.19482 1.10014 1.28674 1.20122 0.93294 0.93636 0.96797 1.20966 0.98812 0.95269 0.97212 1.21048 0.99631 0.98987 0.94642 1.20916 1.02493 0.93567 0.99260 1.20947 1.00503 0.95301 0.97275 1.21011 0.99053 0.99697 0.94567 0.92124 0.84260 0.75107 0.84922 0.82887 0.86085 0.86891 0.87069 0.86844 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.30 13.96 55.43 0.77 -25.52 16 2 C 0.09 2.61 5.47 -17.82 -0.10 2.51 16 3 Si 0.88 21.40 25.91 -169.99 -4.40 17.00 16 4 H -0.25 -5.82 6.86 56.52 0.39 -5.43 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.14 5.32 56.52 0.30 -5.84 16 7 C -0.52 -14.79 9.17 -34.44 -0.32 -15.11 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.21 5.13 2.01 -29.03 -0.06 5.07 16 10 H 0.07 1.64 3.64 -51.93 -0.19 1.45 16 11 O -0.31 -7.18 9.02 -18.77 -0.17 -7.35 16 12 C 0.37 7.97 7.44 -17.17 -0.13 7.84 16 13 C -0.24 -4.23 10.00 -39.14 -0.39 -4.62 16 14 C 0.18 2.74 6.77 -38.86 -0.26 2.48 16 15 O -0.49 -6.21 13.54 -18.95 -0.26 -6.47 16 16 C -0.26 -3.89 10.07 -39.29 -0.40 -4.28 16 17 C 0.16 2.75 11.17 -17.61 -0.20 2.55 16 18 N -0.53 -11.37 7.38 -13.40 -0.10 -11.46 16 19 C -0.04 -0.84 4.96 -104.63 -0.52 -1.36 16 20 C -0.10 -2.10 9.36 -39.58 -0.37 -2.47 16 21 C -0.12 -2.13 10.05 -39.58 -0.40 -2.52 16 22 C -0.14 -2.31 10.05 -39.58 -0.40 -2.71 16 23 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 24 C -0.13 -2.54 9.67 -39.58 -0.38 -2.92 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 27 H 0.39 2.72 9.06 45.56 0.41 3.14 16 28 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.12 2.42 7.74 -52.49 -0.41 2.01 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.12 2.38 6.52 -52.49 -0.34 2.03 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -32.61 297.01 -6.73 -39.33 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -2.73 Total: 8.04 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -4.31 Total: -18.04 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.67 Total: -36.99 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.43 Total: -13.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.40 Total: 17.00 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.61 -6.73 -39.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225606188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.330 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds