Wall clock time and date at job start Mon Mar 30 2020 00:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99654 * 2 1 4 4 H 1.48509 * 109.47272 * 265.46395 * 3 2 1 5 5 H 1.48501 * 109.47447 * 25.46384 * 3 2 1 6 6 H 1.48500 * 109.47416 * 145.46306 * 3 2 1 7 7 C 1.37874 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00203 * 352.87928 * 7 2 1 9 9 C 1.50707 * 119.99927 * 172.87337 * 7 2 1 10 10 H 1.09001 * 109.47216 * 355.80461 * 9 7 2 11 11 O 1.42897 * 109.47011 * 235.80450 * 9 7 2 12 12 C 1.35690 * 116.99668 * 90.00656 * 11 9 7 13 13 C 1.38679 * 119.65277 * 179.72608 * 12 11 9 14 14 C 1.38988 * 119.04528 * 179.77183 * 13 12 11 15 15 O 1.35749 * 120.81726 * 180.21802 * 14 13 12 16 16 C 1.39438 * 118.36859 * 0.48916 * 14 13 12 17 17 C 1.37821 * 119.21807 * 359.74928 * 16 14 13 18 18 N 1.32050 * 120.89195 * 0.02562 * 17 16 14 19 19 C 1.50693 * 109.46669 * 115.80778 * 9 7 2 20 20 C 1.38235 * 120.00376 * 81.39168 * 19 9 7 21 21 C 1.38237 * 120.00152 * 179.77968 * 20 19 9 22 22 C 1.38231 * 120.00055 * 0.45266 * 21 20 19 23 23 C 1.38238 * 120.00177 * 359.80147 * 22 21 20 24 24 C 1.38239 * 119.99915 * 261.66358 * 19 9 7 25 25 H 0.97002 * 120.00459 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.47872 * 359.97438 * 13 12 11 27 27 H 0.96691 * 114.00071 * 270.27496 * 15 14 13 28 28 H 1.08004 * 120.39392 * 179.77600 * 16 14 13 29 29 H 1.08002 * 119.55264 * 180.02562 * 17 16 14 30 30 H 1.07997 * 119.99828 * 359.97438 * 20 19 9 31 31 H 1.08001 * 119.99575 * 180.27303 * 21 20 19 32 32 H 1.07994 * 119.99953 * 179.83010 * 22 21 20 33 33 H 1.07991 * 120.00144 * 180.02562 * 23 22 21 34 34 H 1.08001 * 119.99917 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5925 1.9912 -1.3958 5 1 1.4018 2.6785 0.6019 6 1 3.4954 1.4700 0.7937 7 6 2.0046 -1.1940 0.0005 8 1 1.4710 -2.1256 0.1169 9 6 3.5029 -1.1990 -0.1614 10 1 3.8526 -0.1820 -0.3391 11 8 3.8593 -2.0259 -1.2710 12 6 3.9367 -1.4267 -2.4859 13 6 4.2837 -2.1763 -3.5998 14 6 4.3545 -1.5507 -4.8389 15 8 4.6863 -2.2509 -5.9535 16 6 4.0818 -0.1850 -4.9081 17 6 3.7486 0.4937 -3.7558 18 7 3.6858 -0.1319 -2.5946 19 6 4.1418 -1.7381 1.0925 20 6 4.2210 -3.1030 1.2960 21 6 4.8111 -3.5976 2.4441 22 6 5.3136 -2.7270 3.3930 23 6 5.2297 -1.3619 3.1920 24 6 4.6435 -0.8675 2.0418 25 1 -0.4851 0.8400 -0.0004 26 1 4.4927 -3.2318 -3.5064 27 1 5.6359 -2.2761 -6.1340 28 1 4.1308 0.3348 -5.8536 29 1 3.5360 1.5515 -3.8033 30 1 3.8247 -3.7831 0.5566 31 1 4.8769 -4.6641 2.6010 32 1 5.7721 -3.1134 4.2912 33 1 5.6226 -0.6818 3.9332 34 1 4.5781 0.1991 1.8847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225606188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:41 Heat of formation + Delta-G solvation = -36.313951 kcal Electronic energy + Delta-G solvation = -20133.897019 eV Core-core repulsion = 16996.638422 eV Total energy + Delta-G solvation = -3137.258597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60375 -40.24503 -39.06300 -37.73019 -35.04147 -33.14116 -32.06859 -31.72776 -31.09422 -29.10085 -25.31379 -24.50581 -23.81874 -23.26835 -21.81885 -19.89182 -19.36756 -18.33819 -17.95405 -17.28782 -16.89211 -16.71326 -15.99396 -15.90485 -15.79450 -15.35344 -14.96921 -14.70489 -14.56360 -14.24653 -13.95151 -13.66488 -13.36894 -13.23311 -12.77405 -12.60761 -12.06119 -11.86721 -11.79632 -11.50092 -11.34438 -10.82698 -10.51724 -10.41372 -9.74395 -9.55540 -9.32864 -8.44009 -6.55158 0.17683 0.30570 0.54625 0.58773 1.30808 1.41224 1.46179 2.23686 2.31411 2.78534 2.95082 3.06781 3.20618 3.50733 4.04585 4.08209 4.13967 4.21943 4.22952 4.34596 4.43740 4.55212 4.76357 4.78495 4.82294 4.92666 5.16141 5.16955 5.23978 5.31239 5.47077 5.64860 5.67422 5.84954 6.03987 6.21558 6.47008 6.62311 6.73771 7.05951 7.18449 8.70878 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.007534 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.859467 B = 3715.401688 C = 4831.352339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.234 1.234 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.532 4.532 8 H 0.027 0.973 9 C 0.224 3.776 10 H 0.062 0.938 11 O -0.325 6.325 12 C 0.334 3.666 13 C -0.246 4.246 14 C 0.192 3.808 15 O -0.492 6.492 16 C -0.238 4.238 17 C 0.141 3.859 18 N -0.569 5.569 19 C -0.076 4.076 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.117 4.117 24 C -0.144 4.144 25 H 0.271 0.729 26 H 0.147 0.853 27 H 0.421 0.579 28 H 0.174 0.826 29 H 0.178 0.822 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.846 -0.293 -4.368 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.160 4.160 3 Si 0.763 3.237 4 H -0.158 1.158 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.569 4.569 8 H 0.045 0.955 9 C 0.170 3.830 10 H 0.080 0.920 11 O -0.233 6.233 12 C 0.156 3.844 13 C -0.267 4.267 14 C 0.139 3.861 15 O -0.306 6.306 16 C -0.258 4.258 17 C -0.015 4.015 18 N -0.295 5.295 19 C -0.076 4.076 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.135 4.135 24 C -0.163 4.163 25 H 0.080 0.920 26 H 0.165 0.835 27 H 0.282 0.718 28 H 0.191 0.809 29 H 0.195 0.805 30 H 0.124 0.876 31 H 0.164 0.836 32 H 0.175 0.825 33 H 0.168 0.832 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.934 -0.138 -3.583 14.388 hybrid contribution -0.069 0.268 -0.655 0.711 sum 13.865 0.129 -4.237 14.498 Atomic orbital electron populations 1.70054 1.08424 1.28712 1.49566 1.25877 0.95341 1.03090 0.91706 0.85900 0.78631 0.77858 0.81326 1.15776 1.21947 1.17558 1.21137 0.90687 0.93586 1.51469 0.95478 1.19059 0.92917 0.91065 0.79972 0.92007 1.86197 1.82241 1.40422 1.14418 1.19966 0.89461 0.88160 0.86844 1.21438 1.12125 1.02462 0.90677 1.18336 0.93623 0.89529 0.84595 1.84699 1.32191 1.73616 1.40090 1.22421 1.08231 0.93858 1.01309 1.22792 0.91607 1.00905 0.86183 1.67378 1.20733 1.10321 1.31080 1.20153 0.95870 0.95036 0.96573 1.21008 1.00184 0.94467 0.98678 1.21429 0.98027 1.01098 0.93292 1.21454 1.00503 0.92900 0.99975 1.21380 0.98915 0.96709 0.96472 1.21141 1.00211 0.99255 0.95657 0.91991 0.83486 0.71783 0.80900 0.80495 0.87627 0.83587 0.82524 0.83168 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.97 13.96 21.45 0.30 -58.67 16 2 C 0.04 2.44 5.47 84.65 0.46 2.90 16 3 Si 0.94 45.33 25.91 68.60 1.78 47.10 16 4 H -0.23 -10.53 6.86 99.48 0.68 -9.84 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.25 -11.31 5.32 99.48 0.53 -10.78 16 7 C -0.53 -32.16 9.17 25.60 0.23 -31.92 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.22 11.50 2.01 29.10 0.06 11.56 16 10 H 0.06 3.16 3.64 -2.39 -0.01 3.15 16 11 O -0.33 -16.03 9.02 -90.09 -0.81 -16.85 16 12 C 0.33 14.68 7.44 84.72 0.63 15.31 16 13 C -0.25 -8.70 10.00 22.56 0.23 -8.48 16 14 C 0.19 5.47 6.77 22.74 0.15 5.63 16 15 O -0.49 -10.60 13.54 -90.74 -1.23 -11.83 16 16 C -0.24 -6.34 10.07 22.46 0.23 -6.12 16 17 C 0.14 4.65 11.17 84.56 0.94 5.59 16 18 N -0.57 -24.55 7.38 -309.14 -2.28 -26.83 16 19 C -0.08 -3.48 4.96 -19.87 -0.10 -3.58 16 20 C -0.13 -5.17 9.36 22.27 0.21 -4.96 16 21 C -0.12 -3.87 10.05 22.27 0.22 -3.64 16 22 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 23 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 24 C -0.14 -5.82 9.67 22.27 0.22 -5.60 16 25 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 26 H 0.15 4.78 8.06 -2.91 -0.02 4.76 16 27 H 0.42 4.10 9.06 -74.06 -0.67 3.43 16 28 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.18 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.11 4.53 7.74 -2.91 -0.02 4.51 16 31 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.15 3.56 8.06 -2.92 -0.02 3.54 16 34 H 0.11 4.50 6.52 -2.91 -0.02 4.49 16 Total: -1.00 -77.48 297.01 1.95 -75.53 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.26 Total: 21.76 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.93 Total: -30.22 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.98 Total: -85.50 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -2.04 Total: -28.68 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.78 Total: 47.10 kcal Total: -77.48 1.95 -75.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225606188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.212 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds