Wall clock time and date at job start Mon Mar 30 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35874 * 117.00411 * 2 1 4 4 C 1.39504 * 119.77028 * 359.97438 * 3 2 1 5 5 C 1.37892 * 120.62884 * 180.02562 * 4 3 2 6 6 C 1.39260 * 120.15940 * 359.97438 * 5 4 3 7 7 C 1.47697 * 120.22815 * 179.97438 * 6 5 4 8 8 C 1.39939 * 120.59900 * 65.22483 * 7 6 5 9 9 C 1.38410 * 118.34555 * 180.26815 * 8 7 6 10 10 C 1.38319 * 119.44936 * 359.74522 * 9 8 7 11 11 N 1.31966 * 121.18745 * 0.02562 * 10 9 8 12 12 C 1.32139 * 121.80342 * 0.02562 * 11 10 9 13 13 O 1.35552 * 119.79762 * 179.97438 * 12 11 10 14 14 C 1.41947 * 119.54216 * 0.24653 * 6 5 4 15 15 C 1.40851 * 120.30630 * 179.72956 * 14 6 5 16 16 H 1.07998 * 119.99828 * 25.05418 * 15 14 6 17 17 C 1.40018 * 120.00068 * 205.05362 * 15 14 6 18 18 N 1.30804 * 120.00101 * 17.26033 * 17 15 14 19 19 Si 1.86804 * 120.00225 * 197.25902 * 17 15 14 20 20 H 1.48502 * 109.46834 * 60.00237 * 19 17 15 21 21 H 1.48496 * 109.47092 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.46882 * 300.00128 * 19 17 15 23 23 C 1.37885 * 119.77379 * 180.02562 * 3 2 1 24 24 H 1.09008 * 109.46642 * 300.00127 * 1 2 3 25 25 H 1.09001 * 109.47141 * 59.99676 * 1 2 3 26 26 H 1.08992 * 109.47457 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.68945 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.91906 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.82661 * 0.02562 * 8 7 6 30 30 H 1.07991 * 120.27359 * 179.72973 * 9 8 7 31 31 H 1.08006 * 119.40667 * 180.02562 * 10 9 8 32 32 H 0.96694 * 114.00186 * 90.00116 * 13 12 11 33 33 H 0.97001 * 120.00074 * 180.02562 * 18 17 15 34 34 H 1.07997 * 120.08804 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2106 0.0000 4 6 1.2816 2.3776 -0.0005 5 6 1.8892 3.6154 -0.0011 6 6 3.2784 3.7129 -0.0006 7 6 3.9308 5.0379 -0.0017 8 6 3.7921 5.9012 1.0910 9 6 4.4189 7.1341 1.0381 10 6 5.1611 7.4723 -0.0790 11 7 5.2823 6.6407 -1.0964 12 6 4.7039 5.4526 -1.0974 13 8 4.8551 4.6307 -2.1647 14 6 4.0630 2.5300 -0.0048 15 6 5.4692 2.6098 -0.0100 16 1 5.9618 3.4860 0.3851 17 6 6.2285 1.5533 -0.5275 18 7 5.6656 0.6602 -1.2997 19 14 8.0456 1.4193 -0.1152 20 1 8.2115 1.2938 1.3552 21 1 8.6175 0.2223 -0.7824 22 1 8.7521 2.6356 -0.5911 23 6 3.4232 1.2772 -0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2037 2.3110 -0.0005 28 1 1.2863 4.5115 -0.0019 29 1 3.2073 5.6141 1.9523 30 1 4.3289 7.8263 1.8621 31 1 5.6502 8.4345 -0.1194 32 1 5.6191 4.0413 -2.1022 33 1 6.1915 -0.0720 -1.6579 34 1 4.0092 0.3700 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241118908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:59 Heat of formation + Delta-G solvation = -47.155063 kcal Electronic energy + Delta-G solvation = -20382.184704 eV Core-core repulsion = 17244.456001 eV Total energy + Delta-G solvation = -3137.728703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26970 -40.30528 -38.13925 -37.62709 -35.51241 -33.62658 -31.78139 -31.54731 -29.75986 -27.78759 -27.03095 -24.50161 -23.91790 -22.83134 -21.61934 -19.54125 -19.47945 -17.99842 -17.55784 -17.14574 -16.93330 -16.58630 -16.35290 -16.27505 -15.43905 -14.93289 -14.53268 -14.28625 -14.13136 -13.84933 -13.51803 -13.43405 -13.10512 -12.85025 -12.74372 -12.57454 -12.43154 -12.14595 -11.82404 -11.67308 -11.40094 -11.03296 -10.58199 -10.24381 -9.53283 -9.42649 -8.79778 -8.49223 -6.42473 0.19062 0.40974 0.96579 1.10840 1.37130 1.46593 1.51638 2.15325 2.63902 2.75411 2.79394 3.14339 3.61499 4.02357 4.14334 4.19448 4.30045 4.41256 4.46301 4.49910 4.54927 4.73952 4.75429 4.91316 5.03513 5.08312 5.25594 5.28910 5.42568 5.51197 5.75629 5.87451 5.91888 6.06037 6.13156 6.41160 6.79806 6.85409 6.89181 7.02886 7.15744 8.25776 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.009246 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.096085 B = 3027.461259 C = 4689.563307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.129 3.871 4 C -0.314 4.314 5 C -0.046 4.046 6 C -0.204 4.204 7 C -0.065 4.065 8 C -0.076 4.076 9 C -0.168 4.168 10 C 0.094 3.906 11 N -0.535 5.535 12 C 0.292 3.708 13 O -0.492 6.492 14 C 0.140 3.860 15 C -0.474 4.474 16 H 0.073 0.927 17 C 0.045 3.955 18 N -0.803 5.803 19 Si 0.969 3.031 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.228 4.228 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.147 0.853 30 H 0.177 0.823 31 H 0.190 0.810 32 H 0.399 0.601 33 H 0.291 0.709 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 5.970 5.036 8.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.084 3.916 4 C -0.333 4.333 5 C -0.064 4.064 6 C -0.206 4.206 7 C -0.068 4.068 8 C -0.102 4.102 9 C -0.187 4.187 10 C -0.063 4.063 11 N -0.254 5.254 12 C 0.115 3.885 13 O -0.301 6.301 14 C 0.137 3.863 15 C -0.502 4.502 16 H 0.091 0.909 17 C -0.173 4.173 18 N -0.427 5.427 19 Si 0.790 3.210 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.248 4.248 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.134 0.866 27 H 0.144 0.856 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.195 0.805 31 H 0.207 0.793 32 H 0.258 0.742 33 H 0.102 0.898 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.580 6.008 3.900 7.613 hybrid contribution 0.424 -0.988 0.577 1.220 sum -2.156 5.019 4.477 7.063 Atomic orbital electron populations 1.23147 0.77607 1.04543 1.01494 1.85970 1.22795 1.28339 1.89484 1.19115 0.92250 0.83858 0.96354 1.20651 0.98801 0.91716 1.22135 1.20632 0.93041 0.96361 0.96347 1.18517 0.92698 0.90923 1.18423 1.19853 0.98840 0.94774 0.93381 1.21998 0.97990 0.93332 0.96885 1.22385 0.98364 0.97143 1.00859 1.23104 0.96492 0.98755 0.87989 1.67070 1.22909 1.04760 1.30688 1.19586 0.94572 0.87944 0.86403 1.84564 1.52888 1.52081 1.40585 1.17412 0.93320 0.89337 0.86189 1.19437 0.91192 1.03097 1.36465 0.90915 1.26658 1.05001 0.93692 0.91954 1.69884 1.40405 1.11154 1.21263 0.85440 0.76778 0.79101 0.79715 1.18698 1.19206 1.18333 1.20487 0.90546 0.98614 1.15194 0.92293 0.92924 0.86598 0.85557 0.86569 0.83550 0.80542 0.79280 0.74157 0.89829 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.80 113.37 1.11 1.91 16 2 O -0.35 -15.25 10.48 -92.13 -0.97 -16.21 16 3 C 0.13 6.21 6.67 22.49 0.15 6.36 16 4 C -0.31 -13.57 9.02 22.49 0.20 -13.36 16 5 C -0.05 -1.99 9.72 22.43 0.22 -1.77 16 6 C -0.20 -9.63 5.02 -19.61 -0.10 -9.73 16 7 C -0.07 -2.75 4.39 -19.85 -0.09 -2.84 16 8 C -0.08 -2.54 9.90 22.72 0.22 -2.31 16 9 C -0.17 -4.39 10.09 22.33 0.23 -4.16 16 10 C 0.09 2.71 11.17 84.69 0.95 3.66 16 11 N -0.53 -20.87 10.37 -307.85 -3.19 -24.06 16 12 C 0.29 12.87 7.05 85.16 0.60 13.47 16 13 O -0.49 -23.46 12.59 -88.58 -1.11 -24.57 16 14 C 0.14 7.29 5.41 -21.13 -0.11 7.18 16 15 C -0.47 -23.83 6.44 23.34 0.15 -23.68 16 16 H 0.07 3.62 7.07 -2.91 -0.02 3.60 16 17 C 0.05 2.16 5.14 85.28 0.44 2.60 16 18 N -0.80 -40.64 10.97 21.84 0.24 -40.40 16 19 Si 0.97 36.90 29.59 68.60 2.03 38.93 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.23 -12.23 8.60 22.78 0.20 -12.04 16 24 H 0.06 1.59 7.65 -2.38 -0.02 1.58 16 25 H 0.05 1.50 7.64 -2.39 -0.02 1.48 16 26 H 0.12 2.66 8.14 -2.39 -0.02 2.65 16 27 H 0.13 4.59 6.25 -2.91 -0.02 4.57 16 28 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 30 H 0.18 2.88 8.06 -2.92 -0.02 2.86 16 31 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.40 18.31 7.66 -74.06 -0.57 17.74 16 33 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 34 H 0.10 5.92 6.19 -2.91 -0.02 5.90 16 Total: -1.00 -64.56 294.88 1.74 -62.82 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: 0.58 Total: 38.21 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 4.16 Total: -34.72 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -2.95 Total: -64.46 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -2.08 Total: -40.78 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -64.56 1.74 -62.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241118908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.666 kcal (2) G-P(sol) polarization free energy of solvation -64.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds