Wall clock time and date at job start Mon Mar 30 2020 01:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35759 * 117.00031 * 2 1 4 4 C 1.39401 * 120.79608 * 0.02562 * 3 2 1 5 5 C 1.38006 * 119.31513 * 179.97438 * 4 3 2 6 6 N 1.31863 * 120.95783 * 359.73776 * 5 4 3 7 7 C 1.32777 * 121.74421 * 0.53032 * 6 5 4 8 8 C 1.48229 * 119.70988 * 179.75387 * 7 6 5 9 9 C 1.39322 * 120.16265 * 179.72626 * 8 7 6 10 10 C 1.37998 * 119.93764 * 179.97438 * 9 8 7 11 11 C 1.38457 * 120.27796 * 0.02562 * 10 9 8 12 12 C 1.38089 * 120.33392 * 359.97438 * 11 10 9 13 13 C 1.38775 * 120.05158 * 0.02562 * 12 11 10 14 14 O 1.35636 * 120.14196 * 179.97438 * 13 12 11 15 15 C 1.34823 * 116.99789 * 354.40303 * 14 13 12 16 16 H 1.07996 * 120.00031 * 5.06324 * 15 14 13 17 17 C 1.38658 * 119.99966 * 185.06706 * 15 14 13 18 18 N 1.31553 * 120.00081 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46669 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.46966 * 119.99299 * 19 17 15 22 22 H 1.48491 * 109.47138 * 239.99568 * 19 17 15 23 23 C 1.38992 * 120.79956 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47416 * 300.00117 * 1 2 3 25 25 H 1.09001 * 109.46873 * 60.00525 * 1 2 3 26 26 H 1.09006 * 109.46588 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.34372 * 359.94918 * 4 3 2 28 28 H 1.07999 * 119.52446 * 179.97438 * 5 4 3 29 29 H 1.07997 * 120.03251 * 359.95031 * 9 8 7 30 30 H 1.07995 * 119.85707 * 179.97438 * 10 9 8 31 31 H 1.08008 * 119.83108 * 179.69376 * 11 10 9 32 32 H 1.08002 * 119.97795 * 179.97438 * 12 11 10 33 33 H 0.97003 * 119.99996 * 180.02562 * 18 17 15 34 34 H 1.07995 * 120.50497 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3024 2.3892 0.0005 5 6 1.9605 3.6022 0.0011 6 7 3.2779 3.6592 0.0062 7 6 4.0246 2.5613 0.0007 8 6 5.5023 2.6779 0.0014 9 6 6.2950 1.5322 0.0013 10 6 7.6702 1.6461 0.0014 11 6 8.2672 2.8954 0.0021 12 6 7.4925 4.0385 0.0021 13 6 6.1083 3.9399 0.0020 14 8 5.3456 5.0615 0.0026 15 6 5.9901 6.2399 0.1204 16 1 7.0697 6.2666 0.1264 17 6 5.2667 7.4174 0.2338 18 7 3.9516 7.3849 0.2260 19 14 6.1597 9.0500 0.3977 20 1 7.6260 8.8159 0.3805 21 1 5.7858 9.9345 -0.7349 22 1 5.7771 9.6970 1.6784 23 6 3.4322 1.3017 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 0.2229 2.3541 0.0001 28 1 1.3883 4.5181 0.0011 29 1 5.8336 0.5557 0.0016 30 1 8.2834 0.7571 0.0018 31 1 9.3442 2.9762 0.0071 32 1 7.9642 5.0101 0.0030 33 1 3.4456 8.2087 0.3050 34 1 4.0408 0.4096 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243579991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:20 Heat of formation + Delta-G solvation = -10.834869 kcal Electronic energy + Delta-G solvation = -19910.248164 eV Core-core repulsion = 16774.094423 eV Total energy + Delta-G solvation = -3136.153741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56927 -40.53128 -39.01468 -37.94263 -34.22447 -33.58309 -32.37185 -30.72644 -30.05401 -28.24119 -27.21888 -24.85164 -24.25020 -22.74749 -22.03040 -19.73344 -19.41433 -18.32766 -17.67750 -16.81870 -16.74064 -16.55398 -16.20506 -15.89069 -15.49600 -15.28128 -15.14241 -14.59786 -14.46159 -14.43830 -14.12450 -13.45835 -13.11014 -13.02403 -12.55703 -12.40304 -12.37030 -12.32119 -12.10688 -11.94432 -11.15237 -10.74798 -10.63303 -9.99835 -9.78784 -9.36027 -8.72319 -8.34520 -5.99593 -0.23606 0.49450 0.79666 1.00073 1.36975 1.45534 1.53781 2.19888 2.21463 2.79044 3.07483 3.39184 3.47649 3.60282 3.74466 4.01385 4.10110 4.24160 4.28755 4.37803 4.39618 4.45085 4.60679 4.68098 4.73429 4.89110 4.92114 5.07311 5.13265 5.22188 5.24923 5.54356 5.73180 5.77677 5.80230 6.09247 6.26576 6.29536 7.06361 7.41182 7.94166 8.84752 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.006288 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.626719 B = 4451.893540 C = 6047.640462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.163 3.837 4 C -0.268 4.268 5 C 0.125 3.875 6 N -0.504 5.504 7 C 0.197 3.803 8 C -0.165 4.165 9 C -0.047 4.047 10 C -0.202 4.202 11 C -0.054 4.054 12 C -0.261 4.261 13 C 0.139 3.861 14 O -0.164 6.164 15 C -0.425 4.425 16 H 0.095 0.905 17 C -0.013 4.013 18 N -0.890 5.890 19 Si 1.011 2.989 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.216 4.216 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.167 0.833 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.119 0.881 33 H 0.268 0.732 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -12.998 -0.188 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.110 3.890 4 C -0.288 4.288 5 C -0.034 4.034 6 N -0.216 5.216 7 C 0.062 3.938 8 C -0.167 4.167 9 C -0.065 4.065 10 C -0.220 4.220 11 C -0.072 4.072 12 C -0.280 4.280 13 C 0.084 3.916 14 O -0.066 6.066 15 C -0.502 4.502 16 H 0.113 0.887 17 C -0.213 4.213 18 N -0.525 5.525 19 Si 0.832 3.168 20 H -0.178 1.178 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.236 4.236 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.146 0.854 27 H 0.185 0.815 28 H 0.169 0.831 29 H 0.170 0.830 30 H 0.175 0.825 31 H 0.165 0.835 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.517 -12.217 -0.187 12.475 hybrid contribution -0.482 0.656 0.057 0.816 sum -2.999 -11.561 -0.130 11.944 Atomic orbital electron populations 1.23440 0.75879 1.06037 1.02494 1.86022 1.23938 1.25309 1.88113 1.19116 0.91951 0.85108 0.92817 1.22376 1.02469 0.92126 1.11863 1.22805 0.89949 0.97914 0.92694 1.68118 1.07565 1.32055 1.13819 1.19837 0.93270 0.88065 0.92600 1.18116 0.90338 0.91751 1.16535 1.21204 0.93951 0.96322 0.95066 1.21083 0.94014 0.97985 1.08923 1.21311 1.00295 0.91546 0.94073 1.21290 0.92796 1.00469 1.13445 1.20026 0.91074 0.88177 0.92339 1.84275 1.33555 1.11415 1.77364 1.21953 0.92687 0.82822 1.52700 0.88726 1.26424 0.96511 1.02379 0.95998 1.70283 1.06739 1.28910 1.46596 0.84637 0.78402 0.75513 0.78286 1.17830 1.19552 1.19629 1.21416 0.92825 0.98692 1.10715 0.91652 0.91606 0.85386 0.81534 0.83105 0.83048 0.82528 0.83459 0.86284 0.92334 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.84 113.37 1.12 1.36 16 2 O -0.32 -8.35 10.51 -90.85 -0.95 -9.31 16 3 C 0.16 5.26 6.73 22.73 0.15 5.41 16 4 C -0.27 -8.58 9.11 22.49 0.20 -8.37 16 5 C 0.12 5.19 11.17 84.63 0.95 6.13 16 6 N -0.50 -25.47 8.15 -185.11 -1.51 -26.98 16 7 C 0.20 8.90 6.73 41.89 0.28 9.19 16 8 C -0.17 -7.49 5.89 -19.93 -0.12 -7.61 16 9 C -0.05 -1.62 9.41 22.47 0.21 -1.41 16 10 C -0.20 -6.18 10.03 22.26 0.22 -5.96 16 11 C -0.05 -1.85 10.03 22.29 0.22 -1.63 16 12 C -0.26 -11.66 9.16 22.36 0.20 -11.46 16 13 C 0.14 7.22 6.65 22.82 0.15 7.37 16 14 O -0.16 -10.02 7.59 -21.41 -0.16 -10.18 16 15 C -0.43 -25.19 9.49 67.92 0.64 -24.54 16 16 H 0.10 5.20 5.21 -2.91 -0.02 5.19 16 17 C -0.01 -0.74 5.49 84.83 0.47 -0.27 16 18 N -0.89 -54.34 13.67 21.61 0.30 -54.05 16 19 Si 1.01 43.64 29.55 68.60 2.03 45.66 16 20 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 C -0.22 -7.78 9.42 22.68 0.21 -7.56 16 24 H 0.06 0.94 7.71 -2.39 -0.02 0.93 16 25 H 0.07 0.94 7.71 -2.39 -0.02 0.93 16 26 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.17 3.89 6.45 -2.91 -0.02 3.87 16 28 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 29 H 0.15 4.07 6.18 -2.91 -0.02 4.05 16 30 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 32 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.16 4.70 6.19 -2.91 -0.02 4.69 16 Total: -1.00 -76.86 295.65 5.76 -71.10 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 1.14 Total: 23.10 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 4.92 Total: -39.35 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -1.21 Total: -81.03 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -1.12 Total: -19.49 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -76.86 5.76 -71.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243579991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.266 kcal (2) G-P(sol) polarization free energy of solvation -76.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds