Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36784 * 119.70016 * 2 1 4 4 C 1.47580 * 119.86890 * 359.97438 * 3 2 1 5 5 C 1.39768 * 120.08099 * 310.25966 * 4 3 2 6 6 C 1.37691 * 119.92289 * 180.02562 * 5 4 3 7 7 C 1.39105 * 120.07896 * 0.02562 * 6 5 4 8 8 O 1.35620 * 119.92250 * 180.02562 * 7 6 5 9 9 C 1.34803 * 116.99883 * 5.45724 * 8 7 6 10 10 H 1.07997 * 119.99888 * 354.93293 * 9 8 7 11 11 C 1.38674 * 119.99980 * 174.93415 * 9 8 7 12 12 N 1.31542 * 120.00103 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00221 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46820 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47310 * 119.99714 * 13 11 9 16 16 H 1.48496 * 109.47615 * 240.00442 * 13 11 9 17 17 C 1.39106 * 120.16100 * 359.97438 * 7 6 5 18 18 C 1.37698 * 120.07705 * 0.02562 * 17 7 6 19 19 C 1.37883 * 120.26563 * 179.70483 * 3 2 1 20 20 C 1.39659 * 119.69139 * 0.28168 * 19 3 2 21 21 C 1.36665 * 119.41962 * 359.97438 * 20 19 3 22 22 C 1.34640 * 119.70077 * 180.26876 * 2 1 3 23 23 O 1.22067 * 119.84798 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47218 * 93.65495 * 1 2 3 25 25 H 1.09002 * 109.47079 * 213.65658 * 1 2 3 26 26 H 1.09005 * 109.46901 * 333.65731 * 1 2 3 27 27 H 1.07998 * 120.03684 * 0.03841 * 5 4 3 28 28 H 1.07998 * 119.96209 * 179.71841 * 6 5 4 29 29 H 0.96996 * 119.99851 * 179.97438 * 12 11 9 30 30 H 1.07995 * 119.96292 * 180.02562 * 17 7 6 31 31 H 1.07999 * 120.04058 * 180.02562 * 18 17 7 32 32 H 1.07997 * 120.15321 * 180.29701 * 19 3 2 33 33 H 1.08003 * 120.28910 * 180.02562 * 20 19 3 34 34 H 1.08005 * 120.14257 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.1881 0.0000 4 6 1.3952 2.4606 -0.0006 5 6 0.3668 2.6686 -0.9240 6 6 -0.3281 3.8573 -0.9219 7 6 -0.0074 4.8508 -0.0027 8 8 -0.6943 6.0202 -0.0032 9 6 -1.7460 6.1118 -0.8414 10 1 -1.9583 5.3084 -1.5312 11 6 -2.5553 7.2377 -0.8181 12 7 -2.2969 8.2161 0.0223 13 14 -4.0122 7.3650 -1.9802 14 1 -4.0857 6.1409 -2.8178 15 1 -5.2636 7.5008 -1.1922 16 1 -3.8461 8.5540 -2.8541 17 6 1.0155 4.6474 0.9178 18 6 1.7147 3.4612 0.9216 19 6 3.5214 1.2018 0.0061 20 6 4.2251 -0.0046 0.0064 21 6 3.5352 -1.1843 0.0011 22 6 2.1321 -1.1695 -0.0055 23 8 1.5134 -2.2218 -0.0099 24 1 -0.3633 -0.0655 -1.0255 25 1 -0.3633 -0.8554 0.5696 26 1 -0.3633 0.9210 0.4560 27 1 0.1174 1.8977 -1.6381 28 1 -1.1199 4.0204 -1.6381 29 1 -2.8628 9.0037 0.0384 30 1 1.2615 5.4208 1.6304 31 1 2.5085 3.3038 1.6368 32 1 4.0546 2.1409 0.0110 33 1 5.3052 -0.0052 0.0116 34 1 4.0676 -2.1240 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592528.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = -3.059645 kcal Electronic energy + Delta-G solvation = -19577.604967 eV Core-core repulsion = 16441.788384 eV Total energy + Delta-G solvation = -3135.816582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19399 -39.24740 -37.38287 -36.05800 -34.48924 -32.61211 -30.88213 -30.53144 -27.90938 -27.51499 -25.73727 -23.56405 -22.62300 -21.92927 -21.00194 -18.28942 -17.50483 -17.15034 -17.06655 -16.14456 -15.87024 -14.81034 -14.68704 -14.56972 -14.44381 -13.96821 -13.83233 -13.19834 -13.02520 -12.81116 -12.66371 -12.37438 -12.00674 -11.89669 -11.69351 -11.38539 -11.23538 -10.98038 -10.85958 -10.59833 -9.96895 -9.82357 -9.60973 -9.10165 -8.52998 -7.97899 -7.28518 -6.72559 -4.29350 0.77359 1.75190 1.95462 2.16869 2.81838 2.98550 2.99948 3.05632 3.75273 3.77795 4.25415 4.60314 4.78973 4.83571 4.95784 4.99093 5.24809 5.32850 5.39504 5.40561 5.51335 5.55467 5.72179 5.89135 5.99623 6.09996 6.21596 6.32865 6.41751 6.54727 6.59644 6.77278 6.91417 6.99929 7.13375 7.26691 7.45770 7.71748 8.16564 8.72086 9.36844 10.43820 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.003984 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.075952 B = 7026.458200 C = 7578.801203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.491 5.491 3 C 0.252 3.748 4 C -0.201 4.201 5 C -0.040 4.040 6 C -0.237 4.237 7 C 0.168 3.832 8 O -0.161 6.161 9 C -0.395 4.395 10 H 0.098 0.902 11 C 0.043 3.957 12 N -0.850 5.850 13 Si 0.945 3.055 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.273 1.273 17 C -0.195 4.195 18 C -0.032 4.032 19 C -0.248 4.248 20 C -0.003 4.003 21 C -0.277 4.277 22 C 0.512 3.488 23 O -0.569 6.569 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.133 0.867 29 H 0.274 0.726 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.226 -8.827 -0.573 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.200 5.200 3 C 0.143 3.857 4 C -0.203 4.203 5 C -0.059 4.059 6 C -0.256 4.256 7 C 0.111 3.889 8 O -0.061 6.061 9 C -0.470 4.470 10 H 0.115 0.885 11 C -0.164 4.164 12 N -0.482 5.482 13 Si 0.769 3.231 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.199 1.199 17 C -0.214 4.214 18 C -0.051 4.051 19 C -0.270 4.270 20 C -0.025 4.025 21 C -0.298 4.298 22 C 0.317 3.683 23 O -0.454 6.454 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.151 0.849 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.679 -9.039 -0.384 11.246 hybrid contribution -0.647 0.147 -0.674 0.946 sum 6.032 -8.892 -1.058 10.797 Atomic orbital electron populations 1.22274 0.77502 1.05150 1.03714 1.45742 1.09274 1.06306 1.58715 1.19567 0.91703 0.84592 0.89846 1.17933 1.03880 0.93382 1.05106 1.20852 0.92754 0.96402 0.95846 1.21065 1.05499 0.94942 1.04099 1.19575 0.91215 0.85851 0.92266 1.83932 1.38235 1.28115 1.55845 1.21508 1.03745 1.05775 1.15994 0.88467 1.25396 0.98733 0.94539 0.97711 1.70030 1.37712 1.06745 1.33759 0.85585 0.79431 0.79065 0.79053 1.18854 1.19853 1.19859 1.20141 0.99957 0.98899 1.02415 1.20646 0.97117 0.91384 0.95929 1.20867 0.91051 0.99254 1.15849 1.21301 1.00291 0.91891 0.89029 1.21901 0.92557 0.99780 1.15597 1.17064 0.89348 0.82434 0.79504 1.90916 1.70154 1.29653 1.54721 0.90847 0.89420 0.88521 0.87095 0.84905 0.91556 0.85759 0.86137 0.83877 0.85146 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 8.77 59.84 0.52 1.26 16 2 N -0.49 -7.30 3.01 -122.79 -0.37 -7.67 16 3 C 0.25 3.57 6.26 -81.98 -0.51 3.05 16 4 C -0.20 -3.06 4.62 -104.94 -0.48 -3.55 16 5 C -0.04 -0.64 7.76 -39.21 -0.30 -0.94 16 6 C -0.24 -4.48 9.15 -39.46 -0.36 -4.84 16 7 C 0.17 3.57 6.66 -38.94 -0.26 3.31 16 8 O -0.16 -4.14 9.75 0.53 0.01 -4.14 16 9 C -0.39 -10.03 9.48 30.89 0.29 -9.74 16 10 H 0.10 2.26 5.19 -52.49 -0.27 1.99 16 11 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 12 N -0.85 -23.07 13.67 55.48 0.76 -22.32 16 13 Si 0.94 18.87 29.55 -169.99 -5.02 13.84 16 14 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 17 C -0.19 -3.56 9.97 -39.46 -0.39 -3.95 16 18 C -0.03 -0.49 9.45 -39.20 -0.37 -0.86 16 19 C -0.25 -3.03 9.46 -39.18 -0.37 -3.40 16 20 C 0.00 -0.04 10.07 -39.62 -0.40 -0.44 16 21 C -0.28 -3.70 9.96 -39.37 -0.39 -4.10 16 22 C 0.51 8.35 7.40 -15.54 -0.11 8.23 16 23 O -0.57 -11.01 16.69 4.86 0.08 -10.93 16 24 H 0.07 0.89 7.55 -51.93 -0.39 0.50 16 25 H 0.09 1.17 7.51 -51.93 -0.39 0.78 16 26 H 0.10 1.27 5.97 -51.93 -0.31 0.96 16 27 H 0.11 1.56 6.81 -52.49 -0.36 1.21 16 28 H 0.13 2.52 5.62 -52.49 -0.29 2.23 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 30 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.12 1.52 8.01 -52.49 -0.42 1.10 16 32 H 0.14 1.52 7.99 -52.49 -0.42 1.10 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -29.81 295.63 -6.59 -36.41 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.26 Total: 5.31 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.24 Total: -14.96 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.39 Total: -29.99 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.09 Total: -15.06 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.81 -6.59 -36.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592528.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.348 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds