Wall clock time and date at job start Mon Mar 30 2020 01:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 119.99705 * 2 1 4 4 H 1.48498 * 109.47197 * 264.71723 * 3 2 1 5 5 H 1.48497 * 109.46977 * 24.72182 * 3 2 1 6 6 H 1.48501 * 109.46564 * 144.71744 * 3 2 1 7 7 C 1.40049 * 120.00118 * 179.73030 * 2 1 3 8 8 H 1.07999 * 120.00061 * 187.09394 * 7 2 1 9 9 C 1.46380 * 119.99947 * 7.09428 * 7 2 1 10 10 O 1.21691 * 119.99647 * 6.75828 * 9 7 2 11 11 N 1.34772 * 119.99875 * 186.75740 * 9 7 2 12 12 C 1.46506 * 119.99922 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.53391 * 324.83659 * 12 11 9 14 14 C 1.53170 * 109.53833 * 84.99996 * 12 11 9 15 15 C 1.53084 * 109.12928 * 176.84743 * 14 12 11 16 16 O 1.42857 * 109.45667 * 302.40959 * 15 14 12 17 17 C 1.43251 * 114.01414 * 61.41909 * 16 15 14 18 18 C 1.53183 * 109.09660 * 57.57520 * 17 16 15 19 19 C 1.55094 * 109.02939 * 90.21162 * 18 17 16 20 20 S 1.83974 * 100.88239 * 41.64108 * 19 18 17 21 21 C 1.53958 * 108.65781 * 180.20507 * 17 16 15 22 22 C 1.53130 * 109.53896 * 204.58611 * 12 11 9 23 23 H 0.97005 * 120.00470 * 359.97438 * 1 2 3 24 24 H 0.96998 * 119.99940 * 359.97438 * 11 9 7 25 25 H 1.09004 * 109.52928 * 296.74503 * 14 12 11 26 26 H 1.09004 * 109.52949 * 56.88245 * 14 12 11 27 27 H 1.09004 * 109.47311 * 62.39833 * 15 14 12 28 28 H 1.08997 * 109.48018 * 182.40742 * 15 14 12 29 29 H 1.08997 * 109.59033 * 210.15710 * 18 17 16 30 30 H 1.09000 * 109.59440 * 330.25611 * 18 17 16 31 31 H 1.08999 * 111.13640 * 159.54813 * 19 18 17 32 32 H 1.09001 * 111.13259 * 283.74169 * 19 18 17 33 33 H 1.09004 * 110.32036 * 1.06181 * 21 17 16 34 34 H 1.08993 * 110.32385 * 123.26449 * 21 17 16 35 35 H 1.08995 * 109.53281 * 302.76190 * 22 12 11 36 36 H 1.09000 * 109.53320 * 62.98299 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5997 1.9820 -1.3941 5 1 1.3867 2.6823 0.5855 6 1 3.4779 1.4749 0.8087 7 6 2.0070 -1.2128 0.0057 8 1 3.0808 -1.2159 0.1212 9 6 1.2835 -2.4764 -0.1449 10 8 0.0932 -2.4695 -0.3977 11 7 1.9357 -3.6473 -0.0036 12 6 1.2115 -4.9120 -0.1538 13 1 0.1997 -4.8011 0.2362 14 6 1.1502 -5.2943 -1.6357 15 6 0.4615 -6.6544 -1.7749 16 8 1.1727 -7.6284 -1.0091 17 6 1.2158 -7.3481 0.3950 18 6 -0.2160 -7.2341 0.9275 19 6 -0.6943 -8.6333 1.3955 20 16 0.8166 -9.2509 2.2442 21 6 2.0104 -8.4650 1.0961 22 6 1.9417 -6.0150 0.6176 23 1 -0.4851 0.8400 0.0004 24 1 2.8846 -3.6527 0.1975 25 1 0.5835 -4.5412 -2.1832 26 1 2.1613 -5.3538 -2.0388 27 1 -0.5628 -6.5821 -1.4093 28 1 0.4530 -6.9519 -2.8234 29 1 -0.2392 -6.5401 1.7676 30 1 -0.8719 -6.8690 0.1373 31 1 -1.5297 -8.5508 2.0908 32 1 -0.9535 -9.2646 0.5456 33 1 2.3674 -9.1912 0.3657 34 1 2.8477 -8.0425 1.6514 35 1 2.9673 -6.0939 0.2574 36 1 1.9452 -5.7750 1.6809 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255132019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:19 Heat of formation + Delta-G solvation = -90.851850 kcal Electronic energy + Delta-G solvation = -19408.894906 eV Core-core repulsion = 16404.715319 eV Total energy + Delta-G solvation = -3004.179587 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21801 -37.28502 -34.38311 -34.16594 -32.43988 -30.85911 -30.43775 -27.64321 -26.28384 -24.35482 -23.35129 -21.66642 -19.59185 -19.04069 -17.39856 -17.09714 -16.00244 -15.84759 -15.39521 -15.08093 -14.49839 -14.35911 -14.03996 -13.62645 -13.32607 -13.21979 -12.74850 -12.45706 -12.23305 -12.07758 -11.73793 -11.61958 -11.24982 -11.16316 -11.11007 -10.91974 -10.66829 -10.48910 -10.29100 -10.14308 -9.98709 -9.41655 -8.88333 -7.82053 -7.66755 -7.58817 -6.26379 -4.68132 1.73006 2.15067 3.11756 3.18460 3.20842 3.69115 4.05933 4.36513 4.46921 4.52521 4.60892 4.84823 5.00220 5.03039 5.12881 5.29631 5.31442 5.37111 5.42972 5.51160 5.62895 5.72695 5.79991 5.82400 5.91903 6.01361 6.06673 6.26701 6.50478 6.68372 7.22284 7.39183 7.86954 8.03629 8.28512 8.98171 9.47185 10.54340 10.72064 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.035937 B = 0.004295 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.952834 B = 6517.690682 C = 6653.040405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.090 3.910 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.558 3.442 10 O -0.583 6.583 11 N -0.761 5.761 12 C 0.156 3.844 13 H 0.078 0.922 14 C -0.165 4.165 15 C 0.059 3.941 16 O -0.375 6.375 17 C 0.121 3.879 18 C -0.158 4.158 19 C -0.061 4.061 20 S -0.298 6.298 21 C -0.054 4.054 22 C -0.144 4.144 23 H 0.269 0.731 24 H 0.380 0.620 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -14.374 0.733 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.086 0.914 9 C 0.362 3.638 10 O -0.466 6.466 11 N -0.415 5.415 12 C 0.049 3.951 13 H 0.096 0.904 14 C -0.204 4.204 15 C -0.018 4.018 16 O -0.294 6.294 17 C 0.079 3.921 18 C -0.196 4.196 19 C -0.208 4.208 20 S -0.072 6.072 21 C -0.202 4.202 22 C -0.183 4.183 23 H 0.080 0.920 24 H 0.212 0.788 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.418 -15.109 1.475 15.247 hybrid contribution 0.687 1.778 -0.878 2.099 sum 2.105 -13.331 0.597 13.509 Atomic orbital electron populations 1.69977 1.07127 1.27465 1.35235 1.25677 0.94571 1.00276 0.92451 0.86400 0.80070 0.81295 0.79055 1.19624 1.20509 1.18987 1.20874 0.94280 0.89603 1.53743 0.91432 1.18210 0.86701 0.82360 0.76551 1.90580 1.15940 1.86828 1.53253 1.46191 1.11647 1.04544 1.79128 1.20483 0.97198 0.84437 0.92932 0.90415 1.22647 1.01713 0.96755 0.99304 1.22698 0.95056 0.88451 0.95627 1.88022 1.76168 1.48231 1.16999 1.22125 0.93328 0.94056 0.82567 1.23119 0.96355 0.96756 1.03398 1.24296 0.96706 0.97899 1.01946 1.87750 1.04965 1.71960 1.42532 1.23991 0.98767 0.98751 0.98675 1.22618 1.00186 0.93586 1.01933 0.92018 0.78846 0.90063 0.91553 0.92631 0.88849 0.88950 0.88614 0.87523 0.88973 0.87873 0.87320 0.90637 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.68 11.91 55.55 0.66 -22.02 16 2 C 0.09 2.48 5.48 -17.37 -0.10 2.38 16 3 Si 0.91 19.88 29.56 -169.99 -5.03 14.86 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.55 -15.19 9.53 -35.63 -0.34 -15.53 16 8 H 0.07 1.72 7.86 -52.49 -0.41 1.31 16 9 C 0.56 15.35 7.68 -12.99 -0.10 15.25 16 10 O -0.58 -18.18 14.78 5.20 0.08 -18.10 16 11 N -0.76 -16.30 5.08 -55.06 -0.28 -16.58 16 12 C 0.16 2.81 2.28 -67.77 -0.15 2.65 16 13 H 0.08 1.59 6.70 -51.93 -0.35 1.24 16 14 C -0.16 -2.74 5.72 -26.60 -0.15 -2.89 16 15 C 0.06 0.79 6.54 37.20 0.24 1.04 16 16 O -0.37 -5.10 10.08 -35.23 -0.36 -5.46 16 17 C 0.12 1.53 0.99 -89.81 -0.09 1.44 16 18 C -0.16 -1.93 4.22 -25.53 -0.11 -2.04 16 19 C -0.06 -0.65 7.52 38.26 0.29 -0.36 16 20 S -0.30 -3.61 23.22 -107.50 -2.50 -6.10 16 21 C -0.05 -0.61 6.76 37.66 0.25 -0.36 16 22 C -0.14 -2.02 3.92 -26.45 -0.10 -2.13 16 23 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 24 H 0.38 7.23 8.58 -40.82 -0.35 6.88 16 25 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.73 5.79 -51.93 -0.30 0.43 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.20 7.79 -51.93 -0.40 0.79 16 30 H 0.10 1.19 5.37 -51.93 -0.28 0.91 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.14 7.92 -51.93 -0.41 0.73 16 34 H 0.11 1.12 7.63 -51.93 -0.40 0.73 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -32.72 299.49 -8.25 -40.97 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.99 Total: 8.47 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.36 Total: -0.55 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.38 Total: -38.60 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.28 Total: -23.56 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.86 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.50 Total: -6.10 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.72 -8.25 -40.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255132019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.879 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds