Wall clock time and date at job start Mon Mar 30 2020 01:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46995 * 325.00699 * 3 2 1 5 5 C 1.46498 * 120.00239 * 274.72238 * 4 3 2 6 6 C 1.53008 * 109.46912 * 85.00063 * 5 4 3 7 7 C 1.52996 * 117.49956 * 243.62412 * 6 5 4 8 8 C 1.52996 * 60.00042 * 252.51354 * 7 6 5 9 9 S 1.65597 * 119.99791 * 95.00463 * 4 3 2 10 10 O 1.42103 * 104.27453 * 206.07116 * 9 4 3 11 11 O 1.42101 * 104.27834 * 333.92149 * 9 4 3 12 12 C 1.81392 * 104.45287 * 89.99800 * 9 4 3 13 13 C 1.53002 * 109.47473 * 180.02562 * 12 9 4 14 14 C 1.50700 * 109.47327 * 180.02562 * 13 12 9 15 15 H 1.07998 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99802 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00218 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99936 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46858 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47305 * 119.99962 * 18 16 14 21 21 H 1.48501 * 109.46871 * 240.00183 * 18 16 14 22 22 H 4.40641 * 5.51438 * 179.97438 * 4 1 2 23 23 H 1.08999 * 109.46884 * 205.00835 * 3 2 1 24 24 H 1.08998 * 109.47122 * 85.01010 * 3 2 1 25 25 H 1.08990 * 109.47572 * 205.00129 * 5 4 3 26 26 H 1.09003 * 109.47280 * 325.00485 * 5 4 3 27 27 H 1.08996 * 115.54495 * 29.33457 * 6 5 4 28 28 H 1.09000 * 117.50146 * 359.97438 * 7 6 5 29 29 H 1.08997 * 117.49805 * 145.02114 * 7 6 5 30 30 H 1.09001 * 117.50030 * 252.51432 * 8 7 6 31 31 H 1.08997 * 117.50531 * 107.48870 * 8 7 6 32 32 H 1.09005 * 109.47063 * 299.99983 * 12 9 4 33 33 H 1.08995 * 109.47533 * 59.99686 * 12 9 4 34 34 H 1.09005 * 109.46725 * 299.99899 * 13 12 9 35 35 H 1.08995 * 109.47234 * 59.99213 * 13 12 9 36 36 H 0.97005 * 119.99687 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.1307 0.7921 5 6 3.2805 -0.9999 2.2440 6 6 1.9399 -1.2953 2.9197 7 6 1.2736 -0.1570 3.6951 8 6 1.9112 -1.3257 4.4491 9 16 3.5294 -2.5551 0.0455 10 8 3.3510 -3.5404 1.0538 11 8 2.7380 -2.5631 -1.1347 12 6 5.2868 -2.3781 -0.3677 13 6 5.7755 -3.6458 -1.0714 14 6 7.2357 -3.4989 -1.4140 15 1 7.7623 -2.5920 -1.1561 16 6 7.8992 -4.5224 -2.0568 17 7 7.2580 -5.6270 -2.3705 18 14 9.7091 -4.3401 -2.4822 19 1 10.1935 -3.0126 -2.0258 20 1 10.4865 -5.4102 -1.8072 21 1 9.8857 -4.4523 -3.9524 22 1 -1.0498 -0.0002 0.0004 23 1 3.0089 0.9321 0.4344 24 1 3.0094 -0.0886 -1.0237 25 1 4.0300 -1.7070 2.5992 26 1 3.5943 0.0152 2.4877 27 1 1.2900 -1.9919 2.3901 28 1 1.7905 0.8022 3.7243 29 1 0.1851 -0.1045 3.6757 30 1 1.2421 -2.0421 4.9257 31 1 2.8474 -1.1354 4.9739 32 1 5.4202 -1.5217 -1.0286 33 1 5.8612 -2.2249 0.5459 34 1 5.6421 -4.5025 -0.4107 35 1 5.2011 -3.7986 -1.9850 36 1 7.7249 -6.3468 -2.8231 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319454312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:01 Heat of formation + Delta-G solvation = -19.845343 kcal Electronic energy + Delta-G solvation = -18857.459500 eV Core-core repulsion = 15856.358987 eV Total energy + Delta-G solvation = -3001.100513 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.06704 -38.23620 -37.01256 -36.62170 -35.89109 -33.51340 -33.12028 -29.08474 -27.62230 -26.17373 -23.49639 -23.17200 -21.76808 -20.11931 -19.35615 -18.86963 -18.31209 -17.54429 -17.05737 -16.52443 -16.48566 -15.67088 -15.43367 -15.00829 -14.80595 -14.55001 -14.39433 -13.81586 -13.72297 -13.18336 -13.00964 -12.94409 -12.85859 -12.76377 -12.71777 -12.29659 -12.25516 -12.08875 -11.74877 -11.49041 -11.29787 -11.17389 -10.98540 -10.72737 -10.65353 -10.18534 -8.25629 -6.39971 -0.76115 1.42327 1.42906 1.49033 1.56377 1.99884 2.18447 2.38996 2.86314 2.96409 3.08138 3.18938 3.57084 3.65993 3.90675 4.04489 4.09115 4.15288 4.15574 4.46616 4.59942 4.62748 4.75039 4.78630 4.84229 5.03347 5.07790 5.13416 5.24740 5.27765 5.30236 5.31534 5.63113 5.68962 6.05893 6.74398 6.77301 7.30699 8.87008 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.004613 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.399418 B = 6068.008790 C = 6405.849417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.223 4.223 3 C 0.223 3.777 4 N -0.986 5.986 5 C 0.148 3.852 6 C -0.188 4.188 7 C -0.159 4.159 8 C -0.174 4.174 9 S 2.602 3.398 10 O -0.991 6.991 11 O -0.994 6.994 12 C -0.583 4.583 13 C 0.019 3.981 14 C -0.537 4.537 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.975 3.025 19 H -0.253 1.253 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.239 0.761 23 H 0.144 0.856 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.004 0.996 35 H 0.004 0.996 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 16.211 10.874 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.224 4.224 3 C 0.100 3.900 4 N -0.822 5.822 5 C 0.024 3.976 6 C -0.208 4.208 7 C -0.196 4.196 8 C -0.212 4.212 9 S 2.701 3.299 10 O -0.981 6.981 11 O -0.984 6.984 12 C -0.716 4.716 13 C -0.020 4.020 14 C -0.576 4.576 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.799 3.201 19 H -0.177 1.177 20 H -0.204 1.204 21 H -0.205 1.205 22 H 0.255 0.745 23 H 0.162 0.838 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.139 0.861 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.121 15.349 10.664 20.797 hybrid contribution 0.742 -0.502 -0.542 1.047 sum -8.379 14.847 10.122 19.827 Atomic orbital electron populations 1.25617 0.96908 0.99022 1.00208 1.24065 0.95984 1.01537 1.00861 1.18501 0.83566 0.90968 0.97007 1.57473 1.79149 1.29936 1.15667 1.21164 0.95232 1.04720 0.76513 1.22653 0.99846 1.03417 0.94896 1.23053 1.00159 0.93766 1.02586 1.23043 1.03734 1.01710 0.92701 1.05138 0.78268 0.73428 0.73062 1.93500 1.86446 1.59065 1.59126 1.93502 1.67864 1.86124 1.50907 1.30358 1.21349 1.08180 1.11670 1.18837 0.98118 0.90516 0.94521 1.21556 0.94842 1.02780 1.38394 0.90282 1.26140 1.04089 0.94702 0.95373 1.70121 1.38918 1.06919 1.41642 0.85247 0.78053 0.78959 0.77880 1.17654 1.20449 1.20460 0.74495 0.83817 0.87610 0.89588 0.86112 0.91076 0.86818 0.89243 0.89151 0.86966 0.83505 0.83624 0.97743 0.97726 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.55 19.25 74.32 1.43 -3.12 16 2 C -0.22 -5.56 13.17 31.12 0.41 -5.15 16 3 C 0.22 4.72 5.76 84.57 0.49 5.20 16 4 N -0.99 -25.16 2.71 -525.65 -1.42 -26.59 16 5 C 0.15 3.09 5.57 86.38 0.48 3.57 16 6 C -0.19 -4.30 5.50 -10.79 -0.06 -4.36 16 7 C -0.16 -2.61 10.18 30.59 0.31 -2.30 16 8 C -0.17 -3.15 10.25 30.59 0.31 -2.84 16 9 S 2.60 95.45 5.31 -56.49 -0.30 95.15 16 10 O -0.99 -42.53 16.99 -127.65 -2.17 -44.70 16 11 O -0.99 -42.92 16.98 -127.65 -2.17 -45.09 16 12 C -0.58 -21.57 6.12 71.98 0.44 -21.13 16 13 C 0.02 0.99 4.98 29.85 0.15 1.14 16 14 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 15 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -57.13 13.29 21.45 0.28 -56.84 16 18 Si 0.98 42.89 29.54 68.60 2.03 44.92 16 19 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H 0.24 3.66 7.80 -4.43 -0.03 3.63 16 23 H 0.14 1.72 8.00 -2.39 -0.02 1.71 16 24 H 0.11 2.21 7.61 -2.39 -0.02 2.19 16 25 H 0.09 1.85 7.60 -2.39 -0.02 1.83 16 26 H 0.12 1.52 7.73 -2.39 -0.02 1.50 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.11 1.40 8.03 -2.39 -0.02 1.38 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.15 4.59 8.14 -2.39 -0.02 4.57 16 33 H 0.15 4.59 8.14 -2.39 -0.02 4.57 16 34 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 35 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -78.35 329.44 1.95 -76.40 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.04 Total: 14.77 kcal Atomic # 6 Polarization: -62.68 SS G_CDS: 4.66 Total: -58.02 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.14 Total: -83.43 kcal Atomic # 8 Polarization: -85.46 SS G_CDS: -4.34 Total: -89.79 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 95.45 SS G_CDS: -0.30 Total: 95.15 kcal Total: -78.35 1.95 -76.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319454312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.553 kcal (2) G-P(sol) polarization free energy of solvation -78.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds