Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34168 * 127.01867 * 2 1 4 4 O 1.34225 * 109.14576 * 179.97438 * 3 2 1 5 5 C 1.33668 * 110.91827 * 359.72275 * 4 3 2 6 6 C 1.36532 * 108.37133 * 0.45252 * 5 4 3 7 7 C 1.47255 * 127.19917 * 179.83688 * 6 5 4 8 8 O 1.21635 * 119.99614 * 172.36947 * 7 6 5 9 9 N 1.34774 * 120.00024 * 352.36418 * 7 6 5 10 10 C 1.37008 * 119.99789 * 0.95160 * 9 7 6 11 11 H 1.07994 * 119.99881 * 313.09190 * 10 9 7 12 12 C 1.38909 * 119.99937 * 133.37910 * 10 9 7 13 13 N 1.31423 * 120.00091 * 4.16798 * 12 10 9 14 14 Si 1.86799 * 120.00117 * 184.17165 * 12 10 9 15 15 H 1.48501 * 109.47355 * 59.99641 * 14 12 10 16 16 H 1.48503 * 109.47568 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47254 * 299.99816 * 14 12 10 18 18 C 1.39698 * 120.00211 * 180.94680 * 9 7 6 19 19 C 1.38979 * 120.08277 * 292.44545 * 18 9 7 20 20 C 1.38075 * 119.92431 * 179.74366 * 19 18 9 21 21 C 1.38315 * 120.07608 * 0.52108 * 20 19 18 22 22 C 1.38307 * 120.16266 * 359.73099 * 21 20 19 23 23 C 1.38078 * 120.07925 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.46702 * 270.02660 * 1 2 3 25 25 H 1.09000 * 109.46594 * 30.02305 * 1 2 3 26 26 H 1.08997 * 109.47349 * 150.02240 * 1 2 3 27 27 H 1.07997 * 125.43028 * 359.94656 * 3 2 1 28 28 H 1.07994 * 125.81952 * 180.31050 * 5 4 3 29 29 H 0.97006 * 119.99970 * 185.01015 * 13 12 10 30 30 H 1.08003 * 120.03710 * 359.97438 * 19 18 9 31 31 H 1.07992 * 119.96459 * 180.25264 * 20 19 18 32 32 H 1.08002 * 119.92033 * 179.69772 * 21 20 19 33 33 H 1.08002 * 119.96432 * 179.97438 * 22 21 20 34 34 H 1.07999 * 120.04235 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3148 1.0713 0.0000 4 8 3.5923 0.6593 0.0006 5 6 3.6633 -0.6755 0.0070 6 6 2.3923 -1.1741 0.0006 7 6 1.9918 -2.5911 0.0009 8 8 0.8209 -2.8921 0.1346 9 7 2.9226 -3.5545 -0.1471 10 6 4.2438 -3.2161 -0.2783 11 1 4.5352 -2.4329 -0.9624 12 6 5.2089 -3.8845 0.4642 13 7 4.8652 -4.8953 1.2305 14 14 6.9955 -3.3465 0.3735 15 1 7.1111 -1.9357 0.8222 16 1 7.8191 -4.2143 1.2533 17 1 7.4767 -3.4616 -1.0267 18 6 2.5404 -4.8980 -0.1667 19 6 2.0338 -5.4950 0.9815 20 6 1.6521 -6.8217 0.9570 21 6 1.7835 -7.5594 -0.2055 22 6 2.2921 -6.9702 -1.3488 23 6 2.6712 -5.6426 -1.3330 24 1 -0.3632 0.0005 1.0276 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.9892 2.1009 -0.0008 28 1 4.5713 -1.2601 0.0136 29 1 5.5251 -5.3156 1.8040 30 1 1.9354 -4.9208 1.8909 31 1 1.2546 -7.2851 1.8478 32 1 1.4887 -8.5983 -0.2205 33 1 2.3937 -7.5494 -2.2547 34 1 3.0687 -5.1832 -2.2260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357233687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = 4.717529 kcal Electronic energy + Delta-G solvation = -20638.517560 eV Core-core repulsion = 17503.038221 eV Total energy + Delta-G solvation = -3135.479339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.27456 -41.01576 -38.91428 -36.70628 -34.58470 -33.70396 -31.95531 -31.60486 -29.90209 -28.05476 -27.16836 -24.74529 -23.27687 -22.66651 -21.30636 -20.91920 -19.59864 -18.18904 -17.53513 -17.01686 -16.91607 -16.68501 -16.27658 -15.87615 -15.19062 -14.92465 -14.77027 -14.25650 -14.14690 -14.09894 -13.91802 -13.43404 -13.37025 -13.25698 -13.09108 -12.60619 -12.36933 -12.18662 -12.09513 -11.89637 -11.03128 -10.64420 -10.31719 -9.89970 -9.61048 -9.41517 -9.18910 -8.27582 -6.29864 0.57148 0.74145 0.83481 1.23965 1.45185 1.47595 1.53767 2.19187 2.27111 2.58228 2.88590 2.97410 3.24192 3.92592 4.02288 4.20916 4.26102 4.33702 4.38707 4.54642 4.74208 4.80936 4.84910 4.86871 5.01150 5.06530 5.18594 5.29368 5.31969 5.34242 5.64598 5.68655 5.75241 5.87900 6.05629 6.19979 6.25412 6.53448 6.98277 7.42244 7.90219 8.65784 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.008985 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.935731 B = 3115.442173 C = 4564.384451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.175 4.175 3 C -0.040 4.040 4 O -0.185 6.185 5 C 0.023 3.977 6 C -0.250 4.250 7 C 0.535 3.465 8 O -0.619 6.619 9 N -0.417 5.417 10 C -0.381 4.381 11 H 0.110 0.890 12 C 0.018 3.982 13 N -0.869 5.869 14 Si 0.975 3.025 15 H -0.248 1.248 16 H -0.284 1.284 17 H -0.260 1.260 18 C 0.190 3.810 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.117 4.117 23 C -0.154 4.154 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.045 0.955 27 H 0.250 0.750 28 H 0.242 0.758 29 H 0.274 0.726 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 4.542 -2.505 5.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.177 4.177 3 C -0.105 4.105 4 O -0.080 6.080 5 C -0.046 4.046 6 C -0.254 4.254 7 C 0.329 3.671 8 O -0.506 6.506 9 N -0.132 5.132 10 C -0.507 4.507 11 H 0.127 0.873 12 C -0.189 4.189 13 N -0.502 5.502 14 Si 0.796 3.204 15 H -0.172 1.172 16 H -0.209 1.209 17 H -0.185 1.185 18 C 0.099 3.901 19 C -0.119 4.119 20 C -0.142 4.142 21 C -0.160 4.160 22 C -0.135 4.135 23 C -0.174 4.174 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.266 0.734 28 H 0.257 0.743 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.596 4.396 -2.352 5.021 hybrid contribution 0.756 -0.290 0.348 0.881 sum 0.160 4.106 -2.004 4.571 Atomic orbital electron populations 1.20084 0.88144 1.02553 1.02060 1.21753 0.97927 0.90904 1.07123 1.24342 0.79306 1.00383 1.06507 1.83849 1.30029 1.22946 1.71208 1.26484 1.00737 0.79582 0.97826 1.21409 0.94849 0.93413 1.15754 1.18108 0.84908 0.85544 0.78538 1.90576 1.19532 1.84255 1.56263 1.41076 1.07009 1.02118 1.63030 1.19841 0.80731 1.23485 1.26595 0.87293 1.26470 1.04253 0.94218 0.94009 1.70044 1.37168 1.19623 1.23360 0.85289 0.76506 0.79533 0.79092 1.17161 1.20945 1.18479 1.17825 0.93810 0.85352 0.93066 1.20797 0.99719 0.95599 0.95761 1.21130 1.00645 0.93035 0.99417 1.21259 1.01644 1.00650 0.92470 1.21160 0.99224 0.93565 0.99548 1.21198 1.03464 0.96004 0.96755 0.91773 0.88586 0.93639 0.73417 0.74267 0.91655 0.90502 0.84771 0.83102 0.83559 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 9.96 71.24 0.71 -1.65 16 2 C -0.18 -6.51 6.37 -18.48 -0.12 -6.63 16 3 C -0.04 -1.17 11.96 66.89 0.80 -0.37 16 4 O -0.18 -6.22 10.52 4.23 0.04 -6.18 16 5 C 0.02 0.91 10.32 67.42 0.70 1.60 16 6 C -0.25 -11.38 6.21 -19.00 -0.12 -11.49 16 7 C 0.54 28.61 7.51 86.61 0.65 29.26 16 8 O -0.62 -35.67 15.15 -4.14 -0.06 -35.73 16 9 N -0.42 -22.10 2.60 -462.49 -1.20 -23.30 16 10 C -0.38 -18.79 6.49 84.05 0.55 -18.24 16 11 H 0.11 4.96 5.55 -2.91 -0.02 4.94 16 12 C 0.02 0.87 5.41 84.91 0.46 1.33 16 13 N -0.87 -45.37 11.22 21.66 0.24 -45.13 16 14 Si 0.97 36.71 29.32 68.60 2.01 38.72 16 15 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 16 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 18 C 0.19 9.86 3.24 38.24 0.12 9.99 16 19 C -0.10 -4.99 8.41 22.41 0.19 -4.80 16 20 C -0.12 -5.09 10.04 22.25 0.22 -4.87 16 21 C -0.14 -5.12 10.04 22.30 0.22 -4.90 16 22 C -0.12 -4.43 10.04 22.25 0.22 -4.21 16 23 C -0.15 -7.16 9.81 22.41 0.22 -6.94 16 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.04 1.78 7.07 -2.39 -0.02 1.77 16 27 H 0.25 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.24 9.48 4.53 -2.91 -0.01 9.46 16 29 H 0.27 13.62 8.32 -92.70 -0.77 12.85 16 30 H 0.08 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 32 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 33 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -67.81 296.01 6.99 -60.83 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 1.12 Total: 32.72 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 4.83 Total: -21.94 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -0.96 Total: -68.43 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.02 Total: -41.91 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.01 Total: 38.72 kcal Total: -67.81 6.99 -60.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357233687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.545 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds