Wall clock time and date at job start Mon Mar 30 2020 00:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47405 * 2 1 4 4 C 1.36660 * 120.00454 * 262.82437 * 3 2 1 5 5 H 1.07992 * 119.99884 * 142.44034 * 4 3 2 6 6 C 1.39201 * 119.99829 * 322.44164 * 4 3 2 7 7 N 1.31269 * 119.99896 * 340.50455 * 6 4 3 8 8 Si 1.86796 * 119.99979 * 160.50805 * 6 4 3 9 9 H 1.48499 * 109.47302 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47016 * 119.99644 * 8 6 4 11 11 H 1.48495 * 109.47015 * 239.99898 * 8 6 4 12 12 C 1.34783 * 119.99772 * 82.82468 * 3 2 1 13 13 O 1.21570 * 120.00115 * 183.39221 * 12 3 2 14 14 C 1.48006 * 119.99989 * 3.39740 * 12 3 2 15 15 C 1.40669 * 119.76522 * 173.90108 * 14 12 3 16 16 N 1.31226 * 120.57172 * 180.02562 * 15 14 12 17 17 C 1.33838 * 119.82276 * 0.02562 * 16 15 14 18 18 C 1.40502 * 120.98180 * 179.97438 * 17 16 15 19 19 C 1.36116 * 119.75536 * 180.02562 * 18 17 16 20 20 C 1.39454 * 121.01080 * 359.97438 * 19 18 17 21 21 C 1.36000 * 120.97486 * 0.02562 * 20 19 18 22 22 C 1.40814 * 119.70145 * 359.97438 * 21 20 19 23 23 N 1.32286 * 119.76253 * 353.91871 * 14 12 3 24 24 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47188 * 300.00207 * 1 2 3 26 26 H 1.09004 * 109.46460 * 60.00047 * 1 2 3 27 27 H 1.09002 * 109.46822 * 239.99642 * 2 1 3 28 28 H 1.09003 * 109.46736 * 120.00684 * 2 1 3 29 29 H 0.96992 * 119.99636 * 179.97438 * 7 6 4 30 30 H 1.08005 * 119.71621 * 0.04240 * 15 14 12 31 31 H 1.07999 * 120.12603 * 0.02562 * 18 17 16 32 32 H 1.08004 * 119.48959 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.51192 * 179.74377 * 20 19 18 34 34 H 1.08002 * 120.15372 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3856 1.9761 -1.1742 5 1 2.1678 3.0205 -1.3415 6 6 3.0404 1.2359 -2.1545 7 7 3.6421 0.1133 -1.8370 8 14 3.0628 1.8402 -3.9219 9 1 2.3175 3.1211 -4.0167 10 1 4.4675 2.0511 -4.3551 11 1 2.4208 0.8285 -4.7991 12 6 2.1056 2.0650 1.1581 13 8 2.4520 3.2303 1.1513 14 6 1.7798 1.3973 2.4382 15 6 1.9949 2.0732 3.6530 16 7 1.7121 1.4961 4.7971 17 6 1.2150 0.2535 4.8108 18 6 0.9041 -0.3878 6.0217 19 6 0.4003 -1.6522 6.0066 20 6 0.1856 -2.3257 4.8045 21 6 0.4740 -1.7387 3.6121 22 6 0.9968 -0.4314 3.5863 23 7 1.2887 0.1690 2.4318 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 4.0980 -0.4026 -2.5201 30 1 2.3960 3.0760 3.6440 31 1 1.0643 0.1206 6.9610 32 1 0.1624 -2.1409 6.9399 33 1 -0.2114 -3.3300 4.8209 34 1 0.3020 -2.2724 2.6890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:31 Heat of formation + Delta-G solvation = 59.286649 kcal Electronic energy + Delta-G solvation = -20433.098466 eV Core-core repulsion = 17332.278173 eV Total energy + Delta-G solvation = -3100.820293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14028 -38.62066 -36.95419 -35.23075 -34.41111 -32.13776 -30.52794 -30.38866 -29.47149 -25.99614 -24.88155 -23.84511 -22.27763 -22.03432 -20.23698 -18.15531 -17.97985 -16.93493 -16.26730 -15.47000 -15.22044 -14.94905 -14.74484 -14.19983 -14.10300 -13.68989 -13.52702 -13.03163 -12.87504 -11.96877 -11.88798 -11.76053 -11.64939 -11.57677 -11.43641 -11.23501 -11.10778 -10.80686 -10.49288 -10.38654 -9.91419 -9.24437 -8.87249 -8.69331 -8.44124 -8.25380 -7.60010 -6.55361 -4.09979 0.33222 0.71518 2.10443 2.79096 3.09187 3.16946 3.23588 3.86687 3.96313 4.23326 4.40144 4.45541 4.50439 4.72393 4.88824 4.92468 5.11498 5.31088 5.38333 5.45004 5.71074 5.99101 6.04702 6.14221 6.20809 6.36293 6.39475 6.42868 6.46944 6.80865 6.84135 7.05645 7.32855 7.44337 7.56131 7.97202 8.10104 8.34912 8.97795 9.18321 9.84167 10.45590 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.031200 B = 0.005513 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.213843 B = 5078.081971 C = 5680.372757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 N -0.390 5.390 4 C -0.300 4.300 5 H 0.101 0.899 6 C 0.039 3.961 7 N -0.846 5.846 8 Si 0.926 3.074 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.479 3.521 13 O -0.582 6.582 14 C 0.086 3.914 15 C 0.124 3.876 16 N -0.438 5.438 17 C 0.067 3.933 18 C -0.084 4.084 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.079 4.079 22 C 0.076 3.924 23 N -0.398 5.398 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.274 0.726 30 H 0.182 0.818 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 -6.902 9.430 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 N -0.105 5.105 4 C -0.429 4.429 5 H 0.118 0.882 6 C -0.168 4.168 7 N -0.482 5.482 8 Si 0.751 3.249 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.267 3.733 13 O -0.468 6.468 14 C -0.068 4.068 15 C -0.053 4.053 16 N -0.152 5.152 17 C -0.057 4.057 18 C -0.103 4.103 19 C -0.130 4.130 20 C -0.129 4.129 21 C -0.099 4.099 22 C -0.050 4.050 23 N -0.118 5.118 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.199 0.801 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.091 -6.649 9.414 13.035 hybrid contribution 0.124 0.027 -0.804 0.813 sum -5.967 -6.622 8.610 12.393 Atomic orbital electron populations 1.21968 0.97788 1.00087 1.00499 1.22095 0.92195 0.84305 1.04753 1.43600 1.49864 1.12315 1.04703 1.19752 1.35043 0.97682 0.90433 0.88165 1.25581 0.93965 0.96116 1.01186 1.69892 1.28632 1.15003 1.34648 0.85875 0.78424 0.79366 0.81201 1.18735 1.20380 1.20250 1.17685 0.85760 0.87799 0.82027 1.90631 1.54387 1.16212 1.85532 1.23128 0.95291 0.90984 0.97391 1.23950 0.93512 1.00838 0.87015 1.68750 1.09411 1.08405 1.28598 1.19697 0.99469 0.92170 0.94347 1.20730 0.98408 0.94752 0.96406 1.20913 0.99110 0.94596 0.98430 1.20905 0.99765 1.00232 0.92019 1.20861 0.97468 0.92422 0.99108 1.19900 0.99087 0.96223 0.89762 1.69562 1.08696 1.08120 1.25417 0.93311 0.93778 0.93549 0.88576 0.88956 0.91585 0.80140 0.84845 0.85297 0.85184 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.59 37.16 0.36 -2.47 16 2 C 0.09 2.04 5.20 -4.04 -0.02 2.02 16 3 N -0.39 -10.04 2.53 -115.84 -0.29 -10.34 16 4 C -0.30 -8.10 8.92 -15.04 -0.13 -8.24 16 5 H 0.10 2.79 7.72 -52.49 -0.41 2.39 16 6 C 0.04 1.00 4.93 -17.43 -0.09 0.91 16 7 N -0.85 -22.05 11.45 55.51 0.64 -21.41 16 8 Si 0.93 19.63 29.60 -169.99 -5.03 14.60 16 9 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 C 0.48 12.17 7.55 -12.25 -0.09 12.08 16 13 O -0.58 -16.12 16.19 5.30 0.09 -16.03 16 14 C 0.09 1.86 6.53 -82.75 -0.54 1.33 16 15 C 0.12 2.39 10.75 -16.89 -0.18 2.21 16 16 N -0.44 -7.93 10.45 -10.51 -0.11 -8.04 16 17 C 0.07 1.13 6.59 -84.70 -0.56 0.57 16 18 C -0.08 -1.09 9.98 -39.49 -0.39 -1.48 16 19 C -0.11 -1.15 9.95 -39.89 -0.40 -1.55 16 20 C -0.11 -1.17 9.95 -39.93 -0.40 -1.57 16 21 C -0.08 -1.08 9.99 -39.41 -0.39 -1.47 16 22 C 0.08 1.31 6.59 -84.79 -0.56 0.75 16 23 N -0.40 -7.91 4.49 -7.41 -0.03 -7.94 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.87 6.80 -51.93 -0.35 0.51 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 2.34 5.55 -51.93 -0.29 2.05 16 28 H 0.09 2.07 5.20 -52.74 -0.27 1.80 16 29 H 0.27 6.61 8.30 -40.82 -0.34 6.27 16 30 H 0.18 3.27 7.64 -52.48 -0.40 2.87 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 292.28 15.07 4.40 4.40 Total: -1.00 -30.31 292.28 -7.13 -37.45 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.39 Total: 4.23 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.40 Total: 3.09 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.20 Total: -47.74 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.09 Total: -16.03 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.31 -7.13 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.734 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds