Wall clock time and date at job start Mon Mar 30 2020 00:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47405 * 2 1 4 4 C 1.36660 * 120.00454 * 262.82437 * 3 2 1 5 5 H 1.07992 * 119.99884 * 142.44034 * 4 3 2 6 6 C 1.39201 * 119.99829 * 322.44164 * 4 3 2 7 7 N 1.31269 * 119.99896 * 340.50455 * 6 4 3 8 8 Si 1.86796 * 119.99979 * 160.50805 * 6 4 3 9 9 H 1.48499 * 109.47302 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47016 * 119.99644 * 8 6 4 11 11 H 1.48495 * 109.47015 * 239.99898 * 8 6 4 12 12 C 1.34783 * 119.99772 * 82.82468 * 3 2 1 13 13 O 1.21570 * 120.00115 * 183.39221 * 12 3 2 14 14 C 1.48006 * 119.99989 * 3.39740 * 12 3 2 15 15 C 1.40669 * 119.76522 * 173.90108 * 14 12 3 16 16 N 1.31226 * 120.57172 * 180.02562 * 15 14 12 17 17 C 1.33838 * 119.82276 * 0.02562 * 16 15 14 18 18 C 1.40502 * 120.98180 * 179.97438 * 17 16 15 19 19 C 1.36116 * 119.75536 * 180.02562 * 18 17 16 20 20 C 1.39454 * 121.01080 * 359.97438 * 19 18 17 21 21 C 1.36000 * 120.97486 * 0.02562 * 20 19 18 22 22 C 1.40814 * 119.70145 * 359.97438 * 21 20 19 23 23 N 1.32286 * 119.76253 * 353.91871 * 14 12 3 24 24 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47188 * 300.00207 * 1 2 3 26 26 H 1.09004 * 109.46460 * 60.00047 * 1 2 3 27 27 H 1.09002 * 109.46822 * 239.99642 * 2 1 3 28 28 H 1.09003 * 109.46736 * 120.00684 * 2 1 3 29 29 H 0.96992 * 119.99636 * 179.97438 * 7 6 4 30 30 H 1.08005 * 119.71621 * 0.04240 * 15 14 12 31 31 H 1.07999 * 120.12603 * 0.02562 * 18 17 16 32 32 H 1.08004 * 119.48959 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.51192 * 179.74377 * 20 19 18 34 34 H 1.08002 * 120.15372 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3856 1.9761 -1.1742 5 1 2.1678 3.0205 -1.3415 6 6 3.0404 1.2359 -2.1545 7 7 3.6421 0.1133 -1.8370 8 14 3.0628 1.8402 -3.9219 9 1 2.3175 3.1211 -4.0167 10 1 4.4675 2.0511 -4.3551 11 1 2.4208 0.8285 -4.7991 12 6 2.1056 2.0650 1.1581 13 8 2.4520 3.2303 1.1513 14 6 1.7798 1.3973 2.4382 15 6 1.9949 2.0732 3.6530 16 7 1.7121 1.4961 4.7971 17 6 1.2150 0.2535 4.8108 18 6 0.9041 -0.3878 6.0217 19 6 0.4003 -1.6522 6.0066 20 6 0.1856 -2.3257 4.8045 21 6 0.4740 -1.7387 3.6121 22 6 0.9968 -0.4314 3.5863 23 7 1.2887 0.1690 2.4318 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 4.0980 -0.4026 -2.5201 30 1 2.3960 3.0760 3.6440 31 1 1.0643 0.1206 6.9610 32 1 0.1624 -2.1409 6.9399 33 1 -0.2114 -3.3300 4.8209 34 1 0.3020 -2.2724 2.6890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:31 Heat of formation + Delta-G solvation = 40.134553 kcal Electronic energy + Delta-G solvation = -20433.928963 eV Core-core repulsion = 17332.278173 eV Total energy + Delta-G solvation = -3101.650790 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.53102 -40.36742 -38.20849 -37.12386 -35.89598 -33.99386 -31.86801 -31.51410 -31.24307 -27.70238 -26.37500 -25.28220 -23.99198 -23.22369 -21.87542 -19.57772 -19.30524 -18.74789 -17.84333 -17.25669 -16.82476 -16.32891 -16.14508 -15.67906 -15.37509 -15.33227 -14.85182 -14.70491 -14.54059 -13.68145 -13.60123 -12.99554 -12.93975 -12.86300 -12.78956 -12.69338 -12.62820 -12.47651 -12.30021 -12.06432 -11.63189 -11.01604 -10.78556 -9.98777 -9.92028 -9.53239 -9.51021 -8.45627 -6.15234 -0.95276 -0.58315 0.86329 1.34013 1.41415 1.56424 1.57099 2.19327 2.31036 2.66009 2.91143 3.07429 3.09208 3.10443 3.29133 3.82920 3.86650 4.07652 4.20426 4.32912 4.42956 4.52840 4.71730 4.84919 4.90379 4.95908 5.13035 5.20561 5.21601 5.29864 5.37138 5.39505 5.66384 5.78698 6.09729 6.12979 6.39212 6.61718 7.02234 7.27939 7.90697 8.56379 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.031200 B = 0.005513 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.213843 B = 5078.081971 C = 5680.372757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.096 3.904 3 N -0.408 5.408 4 C -0.347 4.347 5 H 0.074 0.926 6 C 0.009 3.991 7 N -0.876 5.876 8 Si 0.993 3.007 9 H -0.267 1.267 10 H -0.274 1.274 11 H -0.260 1.260 12 C 0.472 3.528 13 O -0.620 6.620 14 C 0.057 3.943 15 C 0.109 3.891 16 N -0.437 5.437 17 C 0.059 3.941 18 C -0.101 4.101 19 C -0.075 4.075 20 C -0.082 4.082 21 C -0.095 4.095 22 C 0.051 3.949 23 N -0.396 5.396 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.280 0.720 30 H 0.180 0.820 31 H 0.154 0.846 32 H 0.181 0.819 33 H 0.179 0.821 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -10.374 11.871 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 N -0.122 5.122 4 C -0.475 4.475 5 H 0.092 0.908 6 C -0.196 4.196 7 N -0.512 5.512 8 Si 0.815 3.185 9 H -0.192 1.192 10 H -0.199 1.199 11 H -0.184 1.184 12 C 0.261 3.739 13 O -0.508 6.508 14 C -0.097 4.097 15 C -0.065 4.065 16 N -0.151 5.151 17 C -0.066 4.066 18 C -0.121 4.121 19 C -0.095 4.095 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.076 4.076 23 N -0.115 5.115 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.197 0.803 31 H 0.171 0.829 32 H 0.198 0.802 33 H 0.196 0.804 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.813 -10.121 11.835 17.423 hybrid contribution 0.502 0.807 -1.086 1.443 sum -7.310 -9.315 10.750 15.992 Atomic orbital electron populations 1.21841 0.95459 1.01947 0.99670 1.22101 0.94024 0.82753 1.03763 1.43761 1.50737 1.13256 1.04482 1.19667 1.38136 0.97307 0.92420 0.90776 1.26346 0.92686 0.96073 1.04537 1.69952 1.29227 1.16005 1.35990 0.84912 0.78436 0.78927 0.76269 1.19160 1.19923 1.18447 1.18266 0.84714 0.87497 0.83414 1.90558 1.55708 1.17918 1.86654 1.22499 0.98869 0.92247 0.96037 1.23792 0.94848 1.01047 0.86853 1.68780 1.09397 1.09375 1.27506 1.20327 0.98707 0.91660 0.95944 1.21086 0.99362 0.96100 0.95511 1.21581 0.94497 0.92902 1.00481 1.21525 0.96361 1.01728 0.90588 1.21154 0.98000 0.90943 1.01352 1.20431 1.00224 0.97886 0.89031 1.69317 1.07417 1.07233 1.27505 0.89916 0.94397 0.94485 0.90416 0.88882 0.90988 0.80292 0.82867 0.80213 0.80404 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.59 71.98 0.69 -4.47 16 2 C 0.10 4.55 5.20 86.38 0.45 5.00 16 3 N -0.41 -22.38 2.53 -638.69 -1.62 -24.00 16 4 C -0.35 -20.07 8.92 84.17 0.75 -19.32 16 5 H 0.07 4.52 7.72 -2.91 -0.02 4.50 16 6 C 0.01 0.45 4.93 85.01 0.42 0.87 16 7 N -0.88 -47.32 11.45 21.70 0.25 -47.08 16 8 Si 0.99 41.67 29.60 68.60 2.03 43.70 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 12 C 0.47 25.81 7.55 86.83 0.66 26.46 16 13 O -0.62 -37.27 16.19 -3.94 -0.06 -37.33 16 14 C 0.06 2.58 6.53 42.26 0.28 2.85 16 15 C 0.11 4.45 10.75 85.38 0.92 5.37 16 16 N -0.44 -15.81 10.45 -187.17 -1.96 -17.76 16 17 C 0.06 1.88 6.59 40.32 0.27 2.14 16 18 C -0.10 -2.18 9.98 22.33 0.22 -1.95 16 19 C -0.07 -1.03 9.95 22.07 0.22 -0.81 16 20 C -0.08 -1.20 9.95 22.04 0.22 -0.98 16 21 C -0.10 -2.23 9.99 22.38 0.22 -2.00 16 22 C 0.05 1.69 6.59 40.47 0.27 1.96 16 23 N -0.40 -15.93 4.49 -177.35 -0.80 -16.73 16 24 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.04 1.51 6.80 -2.39 -0.02 1.50 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 3.93 5.55 -2.39 -0.01 3.92 16 28 H 0.09 4.31 5.20 -4.00 -0.02 4.29 16 29 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 30 H 0.18 7.07 7.64 -2.91 -0.02 7.05 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -72.98 292.28 4.55 -68.43 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.12 Total: 15.66 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.58 Total: 15.11 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -4.12 Total: -105.57 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.06 Total: -37.33 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -72.98 4.55 -68.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.568 kcal (2) G-P(sol) polarization free energy of solvation -72.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds