Wall clock time and date at job start Mon Mar 30 2020 00:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46878 * 2 1 4 4 C 1.36816 * 120.00256 * 263.94839 * 3 2 1 5 5 H 1.08001 * 119.99828 * 133.72935 * 4 3 2 6 6 C 1.39089 * 119.99754 * 313.73252 * 4 3 2 7 7 N 1.31341 * 119.99838 * 163.26956 * 6 4 3 8 8 Si 1.86795 * 119.99997 * 343.26882 * 6 4 3 9 9 H 1.48501 * 109.47280 * 92.19312 * 8 6 4 10 10 H 1.48506 * 109.46875 * 212.19030 * 8 6 4 11 11 H 1.48498 * 109.47311 * 332.18910 * 8 6 4 12 12 C 1.34783 * 119.99989 * 83.95305 * 3 2 1 13 13 O 1.21602 * 119.99994 * 359.95606 * 12 3 2 14 14 C 1.47718 * 120.00083 * 179.97438 * 12 3 2 15 15 C 1.40690 * 119.76207 * 326.36171 * 14 12 3 16 16 C 1.35694 * 120.82351 * 179.77372 * 15 14 12 17 17 C 1.40734 * 120.09780 * 0.47604 * 16 15 14 18 18 N 1.33778 * 120.85210 * 179.69471 * 17 16 15 19 19 C 1.31349 * 119.76816 * 180.02562 * 18 17 16 20 20 C 1.39733 * 120.71544 * 0.04227 * 19 18 17 21 21 N 1.31296 * 120.67388 * 0.02562 * 20 19 18 22 22 C 1.33836 * 119.72896 * 359.96850 * 21 20 19 23 23 C 1.38510 * 119.76482 * 146.63795 * 14 12 3 24 24 H 1.09004 * 109.47173 * 55.14321 * 1 2 3 25 25 H 1.08998 * 109.46901 * 175.14354 * 1 2 3 26 26 H 1.09005 * 109.47054 * 295.14625 * 1 2 3 27 27 H 1.08999 * 109.47249 * 119.99918 * 2 1 3 28 28 H 1.08999 * 109.47079 * 240.00278 * 2 1 3 29 29 H 0.96998 * 119.99772 * 179.97438 * 7 6 4 30 30 H 1.07995 * 119.58418 * 359.97438 * 15 14 12 31 31 H 1.08005 * 119.94913 * 180.25883 * 16 15 14 32 32 H 1.07997 * 119.63912 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.66365 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.25821 * 359.95437 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3641 1.9847 -1.1782 5 1 2.0213 2.9861 -1.3930 6 6 3.1569 1.3083 -2.0994 7 7 3.2219 1.7272 -3.3425 8 14 4.1293 -0.1957 -1.5685 9 1 3.3214 -1.4181 -1.8101 10 1 5.3890 -0.2722 -2.3511 11 1 4.4504 -0.0924 -0.1224 12 6 2.1270 2.0576 1.1608 13 8 1.8190 1.5216 2.2079 14 6 2.6198 3.4502 1.1608 15 6 3.5883 3.8483 0.2212 16 6 4.0527 5.1231 0.1990 17 6 3.5744 6.0648 1.1290 18 7 4.0263 7.3239 1.1246 19 6 3.5654 8.1853 2.0026 20 6 2.6071 7.8011 2.9442 21 7 2.1488 6.5710 2.9698 22 6 2.6028 5.6750 2.0853 23 6 2.1295 4.3531 2.0897 24 1 -0.3634 0.5874 -0.8433 25 1 -0.3633 -1.0240 -0.0870 26 1 -0.3633 0.4367 0.9303 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7751 1.2558 -3.9848 30 1 3.9643 3.1312 -0.4934 31 1 4.7932 5.4145 -0.5313 32 1 3.9314 9.2013 1.9969 33 1 2.2402 8.5231 3.6586 34 1 1.3888 4.0428 2.8119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060757805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:26 Heat of formation + Delta-G solvation = 45.480260 kcal Electronic energy + Delta-G solvation = -20289.440856 eV Core-core repulsion = 17188.021873 eV Total energy + Delta-G solvation = -3101.418983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08651 -39.26854 -36.58487 -35.32249 -34.50262 -32.41850 -31.13862 -30.15676 -29.63543 -25.57570 -25.04502 -23.98934 -22.91815 -21.72351 -19.96930 -18.48637 -17.96664 -16.76704 -16.66775 -15.90822 -15.35142 -14.82300 -14.36131 -14.33199 -14.13834 -13.79456 -13.51051 -13.28477 -12.80177 -12.51341 -12.11985 -11.88354 -11.58778 -11.50341 -11.46734 -11.36196 -11.27041 -10.99272 -10.83749 -10.20560 -10.05183 -9.43730 -8.92896 -8.85501 -8.55785 -8.20253 -7.88244 -6.68307 -4.35081 0.42941 0.79493 2.18420 2.88014 2.96139 3.11165 3.17547 3.74980 3.95645 4.02386 4.29721 4.39186 4.43683 4.51840 4.74251 5.06172 5.09947 5.47315 5.54838 5.62881 5.70444 5.75673 5.96773 6.04869 6.17671 6.26221 6.34739 6.45282 6.55003 6.66589 6.79206 6.85815 7.09445 7.21742 7.47248 7.86299 7.92858 8.04671 8.70392 9.07691 9.44296 10.39176 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.006230 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.759205 B = 4493.439359 C = 5251.435485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.452 5.452 4 C -0.350 4.350 5 H 0.107 0.893 6 C 0.070 3.930 7 N -0.847 5.847 8 Si 0.872 3.128 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.257 1.257 12 C 0.517 3.483 13 O -0.585 6.585 14 C -0.064 4.064 15 C -0.038 4.038 16 C -0.114 4.114 17 C 0.090 3.910 18 N -0.430 5.430 19 C 0.066 3.934 20 C 0.057 3.943 21 N -0.422 5.422 22 C 0.069 3.931 23 C -0.053 4.053 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.280 0.720 30 H 0.173 0.827 31 H 0.138 0.862 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 6.503 5.612 8.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.172 5.172 4 C -0.477 4.477 5 H 0.124 0.876 6 C -0.140 4.140 7 N -0.480 5.480 8 Si 0.698 3.302 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.181 1.181 12 C 0.307 3.693 13 O -0.470 6.470 14 C -0.069 4.069 15 C -0.058 4.058 16 C -0.133 4.133 17 C -0.034 4.034 18 N -0.144 5.144 19 C -0.109 4.109 20 C -0.118 4.118 21 N -0.136 5.136 22 C -0.054 4.054 23 C -0.074 4.074 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.190 0.810 31 H 0.156 0.844 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.721 5.952 5.786 8.332 hybrid contribution 0.444 -0.533 -0.090 0.699 sum 1.165 5.419 5.696 7.948 Atomic orbital electron populations 1.22001 0.96217 1.00988 1.02347 1.21657 0.94747 0.84870 1.01358 1.43601 1.56001 1.11723 1.05873 1.19116 1.32136 1.03216 0.93244 0.87609 1.25482 0.95928 0.97905 0.94645 1.69689 1.36188 1.40317 1.01837 0.86942 0.80094 0.82770 0.80424 1.19555 1.20863 1.18110 1.18227 0.81134 0.86216 0.83746 1.90668 1.54602 1.70149 1.31604 1.20108 0.97089 0.94552 0.95186 1.22034 0.92464 0.96491 0.94833 1.20715 1.01624 0.92255 0.98729 1.19705 0.95467 0.91895 0.96319 1.68675 1.23114 1.01547 1.21030 1.23949 0.94862 1.00159 0.91976 1.23894 0.95410 0.93879 0.98628 1.68617 1.22579 1.01966 1.20433 1.19370 0.96884 0.94834 0.94357 1.21058 0.98988 0.89362 0.97961 0.92002 0.92835 0.92596 0.91511 0.91016 0.90982 0.81034 0.84369 0.81447 0.81428 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.19 37.16 0.38 -2.51 16 2 C 0.10 2.01 4.60 -4.04 -0.02 1.99 16 3 N -0.45 -10.33 2.03 -115.93 -0.24 -10.56 16 4 C -0.35 -8.34 6.37 -15.01 -0.10 -8.44 16 5 H 0.11 2.70 7.11 -52.49 -0.37 2.33 16 6 C 0.07 1.68 4.99 -17.45 -0.09 1.60 16 7 N -0.85 -21.38 13.95 55.50 0.77 -20.60 16 8 Si 0.87 18.80 25.23 -169.99 -4.29 14.51 16 9 H -0.27 -5.62 6.70 56.52 0.38 -5.25 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 12 C 0.52 11.88 7.32 -12.38 -0.09 11.79 16 13 O -0.59 -14.39 16.43 5.28 0.09 -14.31 16 14 C -0.06 -1.34 5.46 -105.00 -0.57 -1.91 16 15 C -0.04 -0.76 7.85 -39.57 -0.31 -1.07 16 16 C -0.11 -2.05 9.95 -39.55 -0.39 -2.44 16 17 C 0.09 1.63 6.59 -84.72 -0.56 1.07 16 18 N -0.43 -6.90 10.46 -10.73 -0.11 -7.01 16 19 C 0.07 0.81 11.21 -17.20 -0.19 0.61 16 20 C 0.06 0.71 11.21 -17.22 -0.19 0.52 16 21 N -0.42 -6.94 10.46 -10.82 -0.11 -7.05 16 22 C 0.07 1.27 6.58 -84.82 -0.56 0.72 16 23 C -0.05 -1.03 9.56 -38.66 -0.37 -1.40 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.38 7.61 -51.93 -0.40 0.98 16 28 H 0.07 1.50 4.31 -51.93 -0.22 1.27 16 29 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.17 3.58 5.46 -52.49 -0.29 3.30 16 31 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 32 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.14 2.72 7.95 -52.49 -0.42 2.30 16 LS Contribution 290.71 15.07 4.38 4.38 Total: -1.00 -28.53 290.71 -5.96 -34.49 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.39 Total: 5.62 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.06 Total: 0.52 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.31 Total: -45.22 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.31 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.29 Total: 14.51 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.53 -5.96 -34.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060757805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.971 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds