Wall clock time and date at job start Mon Mar 30 2020 00:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46878 * 2 1 4 4 C 1.36816 * 120.00256 * 263.94839 * 3 2 1 5 5 H 1.08001 * 119.99828 * 133.72935 * 4 3 2 6 6 C 1.39089 * 119.99754 * 313.73252 * 4 3 2 7 7 N 1.31341 * 119.99838 * 163.26956 * 6 4 3 8 8 Si 1.86795 * 119.99997 * 343.26882 * 6 4 3 9 9 H 1.48501 * 109.47280 * 92.19312 * 8 6 4 10 10 H 1.48506 * 109.46875 * 212.19030 * 8 6 4 11 11 H 1.48498 * 109.47311 * 332.18910 * 8 6 4 12 12 C 1.34783 * 119.99989 * 83.95305 * 3 2 1 13 13 O 1.21602 * 119.99994 * 359.95606 * 12 3 2 14 14 C 1.47718 * 120.00083 * 179.97438 * 12 3 2 15 15 C 1.40690 * 119.76207 * 326.36171 * 14 12 3 16 16 C 1.35694 * 120.82351 * 179.77372 * 15 14 12 17 17 C 1.40734 * 120.09780 * 0.47604 * 16 15 14 18 18 N 1.33778 * 120.85210 * 179.69471 * 17 16 15 19 19 C 1.31349 * 119.76816 * 180.02562 * 18 17 16 20 20 C 1.39733 * 120.71544 * 0.04227 * 19 18 17 21 21 N 1.31296 * 120.67388 * 0.02562 * 20 19 18 22 22 C 1.33836 * 119.72896 * 359.96850 * 21 20 19 23 23 C 1.38510 * 119.76482 * 146.63795 * 14 12 3 24 24 H 1.09004 * 109.47173 * 55.14321 * 1 2 3 25 25 H 1.08998 * 109.46901 * 175.14354 * 1 2 3 26 26 H 1.09005 * 109.47054 * 295.14625 * 1 2 3 27 27 H 1.08999 * 109.47249 * 119.99918 * 2 1 3 28 28 H 1.08999 * 109.47079 * 240.00278 * 2 1 3 29 29 H 0.96998 * 119.99772 * 179.97438 * 7 6 4 30 30 H 1.07995 * 119.58418 * 359.97438 * 15 14 12 31 31 H 1.08005 * 119.94913 * 180.25883 * 16 15 14 32 32 H 1.07997 * 119.63912 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.66365 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.25821 * 359.95437 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3641 1.9847 -1.1782 5 1 2.0213 2.9861 -1.3930 6 6 3.1569 1.3083 -2.0994 7 7 3.2219 1.7272 -3.3425 8 14 4.1293 -0.1957 -1.5685 9 1 3.3214 -1.4181 -1.8101 10 1 5.3890 -0.2722 -2.3511 11 1 4.4504 -0.0924 -0.1224 12 6 2.1270 2.0576 1.1608 13 8 1.8190 1.5216 2.2079 14 6 2.6198 3.4502 1.1608 15 6 3.5883 3.8483 0.2212 16 6 4.0527 5.1231 0.1990 17 6 3.5744 6.0648 1.1290 18 7 4.0263 7.3239 1.1246 19 6 3.5654 8.1853 2.0026 20 6 2.6071 7.8011 2.9442 21 7 2.1488 6.5710 2.9698 22 6 2.6028 5.6750 2.0853 23 6 2.1295 4.3531 2.0897 24 1 -0.3634 0.5874 -0.8433 25 1 -0.3633 -1.0240 -0.0870 26 1 -0.3633 0.4367 0.9303 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7751 1.2558 -3.9848 30 1 3.9643 3.1312 -0.4934 31 1 4.7932 5.4145 -0.5313 32 1 3.9314 9.2013 1.9969 33 1 2.2402 8.5231 3.6586 34 1 1.3888 4.0428 2.8119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060757805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:26 Heat of formation + Delta-G solvation = 26.686092 kcal Electronic energy + Delta-G solvation = -20290.255832 eV Core-core repulsion = 17188.021873 eV Total energy + Delta-G solvation = -3102.233959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.37075 -40.95947 -38.01526 -37.13035 -35.75068 -34.24193 -32.62717 -31.56494 -31.11002 -27.19220 -26.58421 -25.33403 -24.42243 -23.16695 -21.60694 -20.08879 -19.36660 -18.34305 -17.98702 -17.55960 -16.95898 -16.18657 -15.98694 -15.81646 -15.62458 -15.23838 -15.00298 -14.74072 -14.50615 -14.15181 -13.77936 -13.35854 -13.19346 -12.91765 -12.78077 -12.73127 -12.67424 -12.65205 -12.45455 -11.97881 -11.71966 -11.23447 -10.67137 -10.09868 -9.91377 -9.80321 -9.54094 -8.54559 -6.24173 -0.87222 -0.47471 0.82555 1.20466 1.31873 1.43294 1.50553 2.13414 2.18861 2.44458 2.84029 3.06864 3.11690 3.20416 3.31517 3.80868 3.87995 4.04865 4.12514 4.16137 4.36729 4.40074 4.48277 4.49358 4.76102 4.81965 4.83452 4.98431 5.14478 5.23833 5.27975 5.37643 5.44367 5.68326 6.01100 6.16545 6.28384 6.74760 6.85355 7.24350 7.62706 8.56661 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.006230 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.759205 B = 4493.439359 C = 5251.435485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.087 3.913 3 N -0.460 5.460 4 C -0.342 4.342 5 H 0.081 0.919 6 C 0.044 3.956 7 N -0.882 5.882 8 Si 0.916 3.084 9 H -0.253 1.253 10 H -0.277 1.277 11 H -0.269 1.269 12 C 0.513 3.487 13 O -0.608 6.608 14 C -0.092 4.092 15 C -0.053 4.053 16 C -0.105 4.105 17 C 0.076 3.924 18 N -0.452 5.452 19 C 0.091 3.909 20 C 0.081 3.919 21 N -0.449 5.449 22 C 0.050 3.950 23 C -0.049 4.049 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.284 0.716 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.225 0.775 33 H 0.224 0.776 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 8.722 6.801 11.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 N -0.179 5.179 4 C -0.469 4.469 5 H 0.098 0.902 6 C -0.163 4.163 7 N -0.517 5.517 8 Si 0.740 3.260 9 H -0.179 1.179 10 H -0.203 1.203 11 H -0.194 1.194 12 C 0.304 3.696 13 O -0.495 6.495 14 C -0.097 4.097 15 C -0.073 4.073 16 C -0.125 4.125 17 C -0.046 4.046 18 N -0.167 5.167 19 C -0.086 4.086 20 C -0.096 4.096 21 N -0.164 5.164 22 C -0.071 4.071 23 C -0.070 4.070 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.242 0.758 33 H 0.240 0.760 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.013 8.108 6.942 10.722 hybrid contribution 0.344 -0.814 -0.264 0.922 sum 1.357 7.295 6.678 9.983 Atomic orbital electron populations 1.21924 0.94292 1.02959 1.01426 1.21825 0.96469 0.83817 1.01351 1.43705 1.56254 1.12483 1.05470 1.18810 1.32230 1.02492 0.93401 0.90175 1.25850 0.96216 0.99826 0.94391 1.69735 1.37472 1.41852 1.02685 0.86252 0.79434 0.81059 0.79211 1.17851 1.20322 1.19389 1.18610 0.80469 0.87115 0.83419 1.90623 1.55692 1.70975 1.32209 1.19972 0.98793 0.93910 0.96994 1.21725 0.93375 0.97054 0.95105 1.20828 1.01258 0.91621 0.98768 1.19704 0.95686 0.92980 0.96234 1.68760 1.24085 1.00999 1.22817 1.25007 0.92664 1.01543 0.89349 1.24944 0.93362 0.92997 0.98293 1.68674 1.23725 1.03445 1.20526 1.19309 0.97587 0.94778 0.95456 1.21049 0.98643 0.90220 0.97112 0.92910 0.89370 0.93454 0.91448 0.90911 0.90562 0.82891 0.83050 0.75826 0.75958 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 10.19 71.98 0.73 -4.67 16 2 C 0.09 3.69 4.60 86.38 0.40 4.08 16 3 N -0.46 -21.74 2.03 -638.94 -1.30 -23.04 16 4 C -0.34 -17.00 6.37 84.12 0.54 -16.46 16 5 H 0.08 4.36 7.11 -2.91 -0.02 4.34 16 6 C 0.04 2.17 4.99 84.97 0.42 2.59 16 7 N -0.88 -45.64 13.95 21.69 0.30 -45.33 16 8 Si 0.92 39.09 25.23 68.60 1.73 40.82 16 9 H -0.25 -10.10 6.70 99.48 0.67 -9.44 16 10 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.51 24.65 7.32 86.75 0.64 25.29 16 13 O -0.61 -31.01 16.43 -4.04 -0.07 -31.08 16 14 C -0.09 -4.03 5.46 -20.11 -0.11 -4.14 16 15 C -0.05 -2.19 7.85 22.28 0.17 -2.01 16 16 C -0.11 -3.88 9.95 22.29 0.22 -3.65 16 17 C 0.08 2.68 6.59 40.34 0.27 2.94 16 18 N -0.45 -13.19 10.46 -187.87 -1.96 -15.15 16 19 C 0.09 1.74 11.21 85.13 0.95 2.70 16 20 C 0.08 1.59 11.21 85.13 0.95 2.54 16 21 N -0.45 -13.68 10.46 -188.13 -1.97 -15.65 16 22 C 0.05 1.82 6.58 40.25 0.26 2.09 16 23 C -0.05 -1.99 9.56 22.86 0.22 -1.77 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 26 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.07 2.81 7.61 -2.39 -0.02 2.79 16 28 H 0.07 3.02 4.31 -2.39 -0.01 3.01 16 29 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.15 6.84 5.46 -2.91 -0.02 6.82 16 31 H 0.15 4.97 8.06 -2.91 -0.02 4.95 16 32 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.14 5.47 7.95 -2.91 -0.02 5.45 16 Total: -1.00 -64.84 290.71 3.50 -61.34 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.09 Total: 18.57 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.67 Total: 9.51 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -4.93 Total: -99.17 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.07 Total: -31.08 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.73 Total: 40.82 kcal Total: -64.84 3.50 -61.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060757805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.026 kcal (2) G-P(sol) polarization free energy of solvation -64.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds