Wall clock time and date at job start Mon Mar 30 2020 00:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47275 * 2 1 4 4 C 1.46499 * 120.00033 * 269.99898 * 3 2 1 5 5 C 1.50700 * 109.47151 * 269.99977 * 4 3 2 6 6 H 1.08004 * 120.00122 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99873 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99934 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47552 * 120.00162 * 9 7 5 12 12 H 1.48505 * 109.47138 * 240.00066 * 9 7 5 13 13 C 1.38314 * 120.00126 * 89.99981 * 3 2 1 14 14 N 1.31644 * 127.49888 * 0.27665 * 13 3 2 15 15 C 1.31291 * 116.78649 * 180.20567 * 14 13 3 16 16 C 1.50696 * 121.05875 * 179.75119 * 15 14 13 17 17 C 1.52997 * 109.47242 * 269.74706 * 16 15 14 18 18 O 1.42905 * 109.47264 * 180.02562 * 17 16 15 19 19 C 1.42901 * 114.00134 * 179.97438 * 18 17 16 20 20 N 1.30132 * 117.87737 * 359.48642 * 15 14 13 21 21 S 1.69951 * 105.76361 * 0.26912 * 20 15 14 22 22 H 1.09000 * 109.47355 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47232 * 300.00159 * 1 2 3 24 24 H 1.09000 * 109.46706 * 60.00288 * 1 2 3 25 25 H 1.09006 * 109.46939 * 239.99712 * 2 1 3 26 26 H 1.09004 * 109.46996 * 120.00108 * 2 1 3 27 27 H 1.09003 * 109.47006 * 29.99609 * 4 3 2 28 28 H 1.08995 * 109.47253 * 149.99587 * 4 3 2 29 29 H 0.96994 * 120.00154 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46948 * 149.75095 * 16 15 14 31 31 H 1.08992 * 109.47473 * 29.75216 * 16 15 14 32 32 H 1.09001 * 109.47289 * 60.00043 * 17 16 15 33 33 H 1.09004 * 109.47261 * 300.00299 * 17 16 15 34 34 H 1.08994 * 109.46829 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.47036 * 300.00109 * 19 18 17 36 36 H 1.09002 * 109.46796 * 60.00253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3428 1.2301 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9132 2.0954 -3.4175 10 1 6.6009 1.2404 -2.4169 11 1 5.9203 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5263 13 6 2.2489 2.0332 1.1978 14 7 2.0858 1.5566 2.4140 15 6 2.3662 2.3658 3.4092 16 6 2.2085 1.9215 4.8405 17 6 0.7951 2.2520 5.3244 18 8 0.6458 1.8313 6.6819 19 6 -0.6456 2.0957 7.2336 20 7 2.7896 3.5618 3.1201 21 16 2.8189 3.6436 1.4228 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0956 3.1410 -1.1384 29 1 3.6753 3.5161 -4.4439 30 1 2.9365 2.4402 5.4642 31 1 2.3733 0.8462 4.9075 32 1 0.0670 1.7334 4.7007 33 1 0.6303 3.3275 5.2574 34 1 -0.6781 1.7467 8.2657 35 1 -0.8400 3.1678 7.2060 36 1 -1.4039 1.5737 6.6499 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444828542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:19 Heat of formation + Delta-G solvation = -0.492475 kcal Electronic energy + Delta-G solvation = -18452.328232 eV Core-core repulsion = 15484.359674 eV Total energy + Delta-G solvation = -2967.968559 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67443 -37.92228 -36.93974 -33.07436 -32.32778 -30.83710 -30.20127 -27.29821 -26.70986 -24.51869 -23.44931 -23.04232 -20.60794 -18.89118 -18.15684 -16.79054 -16.54919 -16.23225 -15.85407 -15.33364 -15.03282 -14.54906 -14.07012 -13.57522 -13.43578 -13.26507 -12.98243 -12.29425 -12.04086 -11.91726 -11.69885 -11.44002 -11.29697 -11.15973 -11.03135 -10.81071 -10.77380 -10.62248 -10.41252 -10.26328 -9.75695 -9.65382 -8.95960 -8.75211 -8.67079 -7.22309 -6.28361 -4.38800 1.42562 1.74437 2.47673 3.15503 3.17623 3.26370 3.28986 3.42046 3.82599 4.25842 4.70759 5.04380 5.05175 5.06035 5.22156 5.31037 5.38750 5.43367 5.49161 5.59202 5.69113 5.77884 5.90213 6.05958 6.13947 6.18992 6.44096 6.49904 6.68039 6.93003 7.02596 7.38960 7.66850 7.75310 7.84462 8.37379 8.68273 9.29672 10.77089 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.028088 B = 0.004536 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.610195 B = 6171.061814 C = 6693.842888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 N -0.527 5.527 4 C 0.244 3.756 5 C -0.544 4.544 6 H 0.065 0.935 7 C 0.069 3.931 8 N -0.888 5.888 9 Si 0.901 3.099 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.358 3.642 14 N -0.607 5.607 15 C 0.301 3.699 16 C -0.024 4.024 17 C 0.073 3.927 18 O -0.392 6.392 19 C 0.033 3.967 20 N -0.532 5.532 21 S 0.189 5.811 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 -3.350 11.936 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.239 5.239 4 C 0.125 3.875 5 C -0.583 4.583 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.728 3.272 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.206 1.206 13 C -0.019 4.019 14 N -0.346 5.346 15 C 0.011 3.989 16 C -0.067 4.067 17 C -0.005 4.005 18 O -0.311 6.311 19 C -0.063 4.063 20 N -0.367 5.367 21 S 0.326 5.674 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.369 -2.231 11.735 13.537 hybrid contribution 0.367 -0.864 -0.499 1.063 sum -6.002 -3.094 11.236 13.109 Atomic orbital electron populations 1.22141 0.96327 1.01652 1.02163 1.21507 0.93784 0.81834 1.03294 1.46972 1.62119 1.13037 1.01809 1.19733 0.97806 0.92687 0.77261 1.21440 0.96206 1.33380 1.07243 0.91725 1.24923 0.98288 0.94389 0.95935 1.69916 1.35825 1.32552 1.14275 0.86383 0.83905 0.78352 0.78564 1.19557 1.20713 1.20554 1.25162 0.91870 0.95250 0.89638 1.67332 1.35100 1.35911 0.96304 1.22556 0.94085 0.86153 0.96148 1.19847 0.96859 1.03094 0.86892 1.22378 0.96776 0.98908 0.82481 1.87821 1.32810 1.83248 1.27191 1.22718 0.84805 0.99835 0.98970 1.77320 1.32967 1.21752 1.04697 1.85224 1.65384 1.13649 1.03162 0.91905 0.92689 0.92405 0.89620 0.90434 0.93127 0.94122 0.92283 0.88863 0.88584 0.92695 0.92893 0.89665 0.94094 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.12 2.03 6.29 -4.04 -0.03 2.00 16 3 N -0.53 -10.65 2.55 -176.54 -0.45 -11.10 16 4 C 0.24 5.64 5.20 -5.19 -0.03 5.61 16 5 C -0.54 -13.89 9.39 -34.44 -0.32 -14.22 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -24.00 13.29 55.43 0.74 -23.27 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.36 7.34 7.94 -86.35 -0.69 6.65 16 14 N -0.61 -11.71 10.05 -14.57 -0.15 -11.86 16 15 C 0.30 5.46 6.82 -159.03 -1.08 4.38 16 16 C -0.02 -0.35 6.12 -27.89 -0.17 -0.52 16 17 C 0.07 0.95 5.92 37.16 0.22 1.17 16 18 O -0.39 -4.90 10.70 -35.23 -0.38 -5.28 16 19 C 0.03 0.30 11.01 101.05 1.11 1.41 16 20 N -0.53 -10.42 12.15 29.54 0.36 -10.06 16 21 S 0.19 3.88 22.61 -107.50 -2.43 1.45 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 26 H 0.08 1.28 7.73 -51.93 -0.40 0.88 16 27 H 0.05 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.04 1.00 7.23 -51.93 -0.38 0.62 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -28.15 325.25 -8.52 -36.67 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.39 Total: -3.03 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.70 Total: 6.22 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.50 Total: -56.29 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.38 Total: -5.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.43 Total: 1.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.15 -8.52 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444828542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.176 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds