Wall clock time and date at job start Mon Mar 30 2020 00:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47275 * 2 1 4 4 C 1.46499 * 120.00033 * 269.99898 * 3 2 1 5 5 C 1.50700 * 109.47151 * 269.99977 * 4 3 2 6 6 H 1.08004 * 120.00122 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99873 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99934 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47552 * 120.00162 * 9 7 5 12 12 H 1.48505 * 109.47138 * 240.00066 * 9 7 5 13 13 C 1.38314 * 120.00126 * 89.99981 * 3 2 1 14 14 N 1.31644 * 127.49888 * 0.27665 * 13 3 2 15 15 C 1.31291 * 116.78649 * 180.20567 * 14 13 3 16 16 C 1.50696 * 121.05875 * 179.75119 * 15 14 13 17 17 C 1.52997 * 109.47242 * 269.74706 * 16 15 14 18 18 O 1.42905 * 109.47264 * 180.02562 * 17 16 15 19 19 C 1.42901 * 114.00134 * 179.97438 * 18 17 16 20 20 N 1.30132 * 117.87737 * 359.48642 * 15 14 13 21 21 S 1.69951 * 105.76361 * 0.26912 * 20 15 14 22 22 H 1.09000 * 109.47355 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47232 * 300.00159 * 1 2 3 24 24 H 1.09000 * 109.46706 * 60.00288 * 1 2 3 25 25 H 1.09006 * 109.46939 * 239.99712 * 2 1 3 26 26 H 1.09004 * 109.46996 * 120.00108 * 2 1 3 27 27 H 1.09003 * 109.47006 * 29.99609 * 4 3 2 28 28 H 1.08995 * 109.47253 * 149.99587 * 4 3 2 29 29 H 0.96994 * 120.00154 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46948 * 149.75095 * 16 15 14 31 31 H 1.08992 * 109.47473 * 29.75216 * 16 15 14 32 32 H 1.09001 * 109.47289 * 60.00043 * 17 16 15 33 33 H 1.09004 * 109.47261 * 300.00299 * 17 16 15 34 34 H 1.08994 * 109.46829 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.47036 * 300.00109 * 19 18 17 36 36 H 1.09002 * 109.46796 * 60.00253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3428 1.2301 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9132 2.0954 -3.4175 10 1 6.6009 1.2404 -2.4169 11 1 5.9203 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5263 13 6 2.2489 2.0332 1.1978 14 7 2.0858 1.5566 2.4140 15 6 2.3662 2.3658 3.4092 16 6 2.2085 1.9215 4.8405 17 6 0.7951 2.2520 5.3244 18 8 0.6458 1.8313 6.6819 19 6 -0.6456 2.0957 7.2336 20 7 2.7896 3.5618 3.1201 21 16 2.8189 3.6436 1.4228 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0956 3.1410 -1.1384 29 1 3.6753 3.5161 -4.4439 30 1 2.9365 2.4402 5.4642 31 1 2.3733 0.8462 4.9075 32 1 0.0670 1.7334 4.7007 33 1 0.6303 3.3275 5.2574 34 1 -0.6781 1.7467 8.2657 35 1 -0.8400 3.1678 7.2060 36 1 -1.4039 1.5737 6.6499 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444828542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:19 Heat of formation + Delta-G solvation = -16.285037 kcal Electronic energy + Delta-G solvation = -18453.013049 eV Core-core repulsion = 15484.359674 eV Total energy + Delta-G solvation = -2968.653376 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16957 -38.95724 -38.42452 -34.98570 -33.62617 -32.16042 -31.74063 -29.04175 -27.61240 -25.88960 -25.07554 -24.35921 -22.06407 -20.35811 -19.72837 -18.71698 -17.83154 -17.49031 -16.87007 -16.74342 -16.52876 -16.00668 -15.53143 -14.90763 -14.77091 -14.56917 -14.27515 -13.93259 -13.56946 -13.17697 -12.95100 -12.87123 -12.80882 -12.57691 -12.37594 -12.31806 -12.16590 -12.13439 -11.99111 -11.88492 -11.46349 -10.70019 -10.66235 -10.51966 -10.33155 -8.87065 -8.24269 -6.43608 -0.13858 0.16352 0.94645 1.38609 1.42305 1.52043 1.70923 1.83619 2.37423 2.74976 3.03557 3.38030 3.99284 4.04464 4.09581 4.27760 4.33855 4.47550 4.53128 4.56662 4.58512 4.68014 4.80540 4.85004 4.87329 4.94618 5.00379 5.02416 5.10695 5.30616 5.56677 5.84036 5.89955 6.14322 6.14433 6.63581 6.85625 7.28243 8.78176 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.028088 B = 0.004536 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.610195 B = 6171.061814 C = 6693.842888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.116 3.884 3 N -0.530 5.530 4 C 0.259 3.741 5 C -0.551 4.551 6 H 0.054 0.946 7 C 0.026 3.974 8 N -0.916 5.916 9 Si 0.958 3.042 10 H -0.271 1.271 11 H -0.273 1.273 12 H -0.279 1.279 13 C 0.353 3.647 14 N -0.604 5.604 15 C 0.303 3.697 16 C -0.021 4.021 17 C 0.082 3.918 18 O -0.406 6.406 19 C 0.025 3.975 20 N -0.537 5.537 21 S 0.152 5.848 22 H 0.094 0.906 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.271 0.729 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 -4.464 12.953 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.007 4.007 3 N -0.243 5.243 4 C 0.139 3.861 5 C -0.590 4.590 6 H 0.073 0.927 7 C -0.176 4.176 8 N -0.555 5.555 9 Si 0.784 3.216 10 H -0.196 1.196 11 H -0.198 1.198 12 H -0.204 1.204 13 C -0.025 4.025 14 N -0.343 5.343 15 C 0.013 3.987 16 C -0.064 4.064 17 C 0.004 3.996 18 O -0.325 6.325 19 C -0.071 4.071 20 N -0.372 5.372 21 S 0.288 5.712 22 H 0.113 0.887 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.066 0.934 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.595 -3.364 12.778 14.768 hybrid contribution 0.381 -0.550 -0.714 0.979 sum -6.214 -3.914 12.064 14.123 Atomic orbital electron populations 1.22049 0.94176 1.03487 1.01419 1.21740 0.95493 0.79917 1.03588 1.46935 1.62365 1.14090 1.00924 1.19335 0.96557 0.91899 0.78328 1.21605 0.97162 1.33047 1.07197 0.92733 1.25625 1.01682 0.94186 0.96061 1.69993 1.37387 1.33346 1.14736 0.85493 0.79688 0.78143 0.78319 1.19593 1.19796 1.20436 1.25298 0.91962 0.95070 0.90141 1.67412 1.35055 1.35827 0.95963 1.23234 0.92485 0.85510 0.97471 1.19966 0.98169 1.03727 0.84500 1.22186 0.95650 0.98687 0.83110 1.87791 1.34785 1.83385 1.26550 1.22962 0.83495 1.00611 0.99984 1.77415 1.33957 1.22503 1.03336 1.85299 1.66305 1.14818 1.04759 0.88744 0.93449 0.93033 0.89431 0.89948 0.93701 0.95934 0.92016 0.87959 0.87529 0.92794 0.93170 0.87696 0.93400 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 10.24 71.98 0.74 -3.36 16 2 C 0.12 3.77 6.29 86.38 0.54 4.31 16 3 N -0.53 -21.39 2.55 -712.45 -1.82 -23.21 16 4 C 0.26 12.12 5.20 85.63 0.45 12.57 16 5 C -0.55 -28.32 9.39 25.60 0.24 -28.08 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 7 C 0.03 1.34 5.46 84.65 0.46 1.80 16 8 N -0.92 -49.73 13.29 21.45 0.28 -49.44 16 9 Si 0.96 41.57 29.54 68.60 2.03 43.60 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.35 14.43 7.94 178.86 1.42 15.85 16 14 N -0.60 -22.72 10.05 -200.02 -2.01 -24.74 16 15 C 0.30 10.69 6.82 139.39 0.95 11.64 16 16 C -0.02 -0.57 6.12 29.85 0.18 -0.39 16 17 C 0.08 1.99 5.92 71.98 0.43 2.42 16 18 O -0.41 -9.30 10.70 -148.98 -1.59 -10.90 16 19 C 0.03 0.40 11.01 113.37 1.25 1.65 16 20 N -0.54 -20.82 12.15 -60.44 -0.73 -21.55 16 21 S 0.15 6.31 22.61 -56.49 -1.28 5.04 16 22 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 2.79 8.07 -2.38 -0.02 2.78 16 26 H 0.08 2.59 7.73 -2.38 -0.02 2.57 16 27 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 28 H 0.02 1.14 7.23 -2.39 -0.02 1.13 16 29 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -58.82 325.25 2.59 -56.23 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.06 Total: 6.55 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.66 Total: 18.41 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -4.28 Total: -118.93 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -1.59 Total: -10.90 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.28 Total: 5.04 kcal Total: -58.82 2.59 -56.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444828542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.945 kcal (2) G-P(sol) polarization free energy of solvation -58.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds