Wall clock time and date at job start Mon Mar 30 2020 00:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47336 * 2 1 4 4 N 1.40445 * 126.82493 * 90.02464 * 3 2 1 5 5 C 1.30707 * 106.79252 * 179.74103 * 4 3 2 6 6 N 1.33236 * 108.95130 * 0.02562 * 5 4 3 7 7 C 1.30839 * 109.82829 * 359.97438 * 6 5 4 8 8 C 1.50696 * 125.96169 * 179.97438 * 7 6 5 9 9 S 1.81396 * 109.47268 * 270.02885 * 8 7 6 10 10 O 1.42097 * 109.47202 * 63.61076 * 9 8 7 11 11 C 1.81403 * 102.99981 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.47053 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47207 * 179.97438 * 12 11 9 14 14 C 1.50691 * 109.47215 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00019 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99992 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99756 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47207 * 89.99862 * 18 16 14 20 20 H 1.48497 * 109.46993 * 209.99485 * 18 16 14 21 21 H 1.48501 * 109.47288 * 329.99815 * 18 16 14 22 22 H 1.09004 * 109.46878 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47090 * 299.99603 * 1 2 3 24 24 H 1.08996 * 109.47263 * 59.99970 * 1 2 3 25 25 H 1.09003 * 109.47090 * 240.00397 * 2 1 3 26 26 H 1.09001 * 109.47703 * 120.00187 * 2 1 3 27 27 H 1.08005 * 125.52409 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.46969 * 30.03169 * 8 7 6 29 29 H 1.08998 * 109.46826 * 150.02677 * 8 7 6 30 30 H 1.09005 * 109.46762 * 299.99264 * 11 9 8 31 31 H 1.08997 * 109.47177 * 59.99705 * 11 9 8 32 32 H 1.09005 * 109.46494 * 299.99132 * 12 11 9 33 33 H 1.08997 * 109.47612 * 59.99675 * 12 11 9 34 34 H 1.09001 * 109.46830 * 299.99899 * 13 12 11 35 35 H 1.08997 * 109.46902 * 59.99483 * 13 12 11 36 36 H 0.97003 * 119.99662 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2994 2.1747 1.1242 5 6 2.7140 3.3306 0.6765 6 7 2.7078 3.3061 -0.6556 7 6 2.2916 2.1391 -1.0761 8 6 2.1436 1.7184 -2.5156 9 16 0.4739 2.1256 -3.0959 10 8 0.2928 3.5347 -3.0667 11 6 0.4890 1.5529 -4.8171 12 6 -0.8720 1.8299 -5.4588 13 6 -0.8590 1.3474 -6.9107 14 6 -2.1997 1.6197 -7.5425 15 1 -2.9826 2.0903 -6.9663 16 6 -2.4268 1.2681 -8.8562 17 7 -1.4733 0.6956 -9.5580 18 14 -4.0886 1.6063 -9.6397 19 1 -4.0772 2.9545 -10.2622 20 1 -4.3627 0.5830 -10.6802 21 1 -5.1469 1.5504 -8.5994 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.0130 4.1696 1.2874 28 1 2.8784 2.2442 -3.1252 29 1 2.3050 0.6436 -2.5984 30 1 1.2653 2.0826 -5.3694 31 1 0.6917 0.4822 -4.8419 32 1 -1.6485 1.3005 -4.9065 33 1 -1.0743 2.9007 -5.4339 34 1 -0.0825 1.8771 -7.4626 35 1 -0.6566 0.2767 -6.9359 36 1 -1.6330 0.4485 -10.4823 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322139817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:56 Heat of formation + Delta-G solvation = 35.969206 kcal Electronic energy + Delta-G solvation = -18128.295086 eV Core-core repulsion = 15161.907624 eV Total energy + Delta-G solvation = -2966.387462 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.26801 -35.64911 -35.35394 -34.50763 -32.78533 -32.08236 -30.52580 -28.41256 -27.51419 -24.37976 -23.51003 -21.99916 -20.85026 -20.16261 -17.54240 -17.35990 -16.42269 -16.12275 -15.44346 -15.21383 -14.90418 -14.64695 -14.41282 -14.27654 -13.84209 -13.42928 -13.19354 -12.67108 -12.48034 -12.39134 -12.05659 -11.94060 -11.53627 -11.47097 -10.92810 -10.88669 -10.75600 -10.44521 -10.11349 -9.93687 -9.86822 -9.78551 -9.27877 -9.07652 -8.39512 -8.18403 -6.04504 -4.07291 1.04545 1.73232 2.06856 2.58529 2.88774 3.30337 3.36639 3.39848 3.69170 3.89756 4.17121 4.43018 4.52450 4.59807 4.66484 4.84330 5.13556 5.17778 5.31155 5.36391 5.37193 5.45271 5.48020 5.75471 6.08553 6.11417 6.27718 6.42165 6.57712 6.60840 6.96819 7.60530 7.72345 7.94420 7.95244 8.35957 8.99537 9.57295 11.06697 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.039127 B = 0.003392 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.448436 B = 8252.811179 C = 8458.759366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.117 3.883 3 N -0.375 5.375 4 N -0.321 5.321 5 C 0.200 3.800 6 N -0.536 5.536 7 C 0.303 3.697 8 C -0.390 4.390 9 S 1.238 4.762 10 O -0.821 6.821 11 C -0.434 4.434 12 C -0.094 4.094 13 C 0.027 3.973 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.217 0.783 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.015 0.985 35 H 0.020 0.980 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.626 -5.600 19.929 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.005 4.005 3 N -0.167 5.167 4 N -0.149 5.149 5 C -0.103 4.103 6 N -0.265 5.265 7 C 0.027 3.973 8 C -0.525 4.525 9 S 1.434 4.566 10 O -0.816 6.816 11 C -0.573 4.573 12 C -0.133 4.133 13 C -0.011 4.011 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 H 0.106 0.894 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.234 0.766 28 H 0.141 0.859 29 H 0.154 0.846 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.038 0.962 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.996 -5.208 20.872 22.332 hybrid contribution 0.829 1.055 -1.925 2.347 sum 6.825 -4.153 18.947 20.562 Atomic orbital electron populations 1.22299 0.93333 1.04122 1.03797 1.21913 0.96049 0.77333 1.05182 1.50475 1.49552 1.13117 1.03551 1.78014 1.23916 1.04896 1.08037 1.25960 0.97901 0.96130 0.90314 1.70530 1.24371 1.19954 1.11607 1.23100 0.95785 0.87548 0.90883 1.26562 1.24675 1.08600 0.92665 1.70842 0.91284 0.98470 0.95956 1.93190 1.75333 1.29279 1.83779 1.27709 1.05931 1.08569 1.15068 1.21345 0.90842 1.01124 1.00038 1.19095 0.97189 0.96580 0.88247 1.21264 0.98543 1.39670 0.96742 0.92514 1.25024 0.96930 0.95129 0.97334 1.69960 1.32600 1.41667 1.09279 0.86581 0.84227 0.78013 0.79129 1.20656 1.21190 1.19748 0.89382 0.91295 0.91415 0.87964 0.88172 0.76649 0.85900 0.84555 0.89497 0.86485 0.92062 0.92655 0.96619 0.96162 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.12 0.69 7.02 -4.04 -0.03 0.67 16 3 N -0.37 -4.01 3.64 -58.34 -0.21 -4.22 16 4 N -0.32 -3.98 12.70 29.29 0.37 -3.61 16 5 C 0.20 2.51 13.03 -91.82 -1.20 1.32 16 6 N -0.54 -8.11 11.19 -11.97 -0.13 -8.24 16 7 C 0.30 3.83 7.24 -155.69 -1.13 2.70 16 8 C -0.39 -4.00 6.25 36.00 0.22 -3.78 16 9 S 1.24 15.46 12.50 -107.50 -1.34 14.12 16 10 O -0.82 -16.06 18.14 -35.23 -0.64 -16.70 16 11 C -0.43 -6.29 5.92 37.16 0.22 -6.07 16 12 C -0.09 -1.84 5.16 -26.73 -0.14 -1.98 16 13 C 0.03 0.68 4.97 -27.89 -0.14 0.54 16 14 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.35 7.49 -51.93 -0.39 -0.04 16 25 H 0.10 0.32 7.10 -51.93 -0.37 -0.05 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.22 1.86 8.06 -52.48 -0.42 1.44 16 28 H 0.12 1.38 8.14 -51.92 -0.42 0.96 16 29 H 0.14 0.76 7.12 -51.92 -0.37 0.39 16 30 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 31 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -39.46 323.95 -8.89 -48.36 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -5.32 Total: -4.65 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -2.21 Total: -20.53 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.76 Total: -41.86 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.64 Total: -16.70 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 15.46 SS G_CDS: -1.34 Total: 14.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -39.46 -8.89 -48.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322139817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.326 kcal (2) G-P(sol) polarization free energy of solvation -39.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds