Wall clock time and date at job start Mon Mar 30 2020 00:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47336 * 2 1 4 4 N 1.40445 * 126.82493 * 90.02464 * 3 2 1 5 5 C 1.30707 * 106.79252 * 179.74103 * 4 3 2 6 6 N 1.33236 * 108.95130 * 0.02562 * 5 4 3 7 7 C 1.30839 * 109.82829 * 359.97438 * 6 5 4 8 8 C 1.50696 * 125.96169 * 179.97438 * 7 6 5 9 9 S 1.81396 * 109.47268 * 270.02885 * 8 7 6 10 10 O 1.42097 * 109.47202 * 63.61076 * 9 8 7 11 11 C 1.81403 * 102.99981 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.47053 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47207 * 179.97438 * 12 11 9 14 14 C 1.50691 * 109.47215 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00019 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99992 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99756 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47207 * 89.99862 * 18 16 14 20 20 H 1.48497 * 109.46993 * 209.99485 * 18 16 14 21 21 H 1.48501 * 109.47288 * 329.99815 * 18 16 14 22 22 H 1.09004 * 109.46878 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47090 * 299.99603 * 1 2 3 24 24 H 1.08996 * 109.47263 * 59.99970 * 1 2 3 25 25 H 1.09003 * 109.47090 * 240.00397 * 2 1 3 26 26 H 1.09001 * 109.47703 * 120.00187 * 2 1 3 27 27 H 1.08005 * 125.52409 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.46969 * 30.03169 * 8 7 6 29 29 H 1.08998 * 109.46826 * 150.02677 * 8 7 6 30 30 H 1.09005 * 109.46762 * 299.99264 * 11 9 8 31 31 H 1.08997 * 109.47177 * 59.99705 * 11 9 8 32 32 H 1.09005 * 109.46494 * 299.99132 * 12 11 9 33 33 H 1.08997 * 109.47612 * 59.99675 * 12 11 9 34 34 H 1.09001 * 109.46830 * 299.99899 * 13 12 11 35 35 H 1.08997 * 109.46902 * 59.99483 * 13 12 11 36 36 H 0.97003 * 119.99662 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2994 2.1747 1.1242 5 6 2.7140 3.3306 0.6765 6 7 2.7078 3.3061 -0.6556 7 6 2.2916 2.1391 -1.0761 8 6 2.1436 1.7184 -2.5156 9 16 0.4739 2.1256 -3.0959 10 8 0.2928 3.5347 -3.0667 11 6 0.4890 1.5529 -4.8171 12 6 -0.8720 1.8299 -5.4588 13 6 -0.8590 1.3474 -6.9107 14 6 -2.1997 1.6197 -7.5425 15 1 -2.9826 2.0903 -6.9663 16 6 -2.4268 1.2681 -8.8562 17 7 -1.4733 0.6956 -9.5580 18 14 -4.0886 1.6063 -9.6397 19 1 -4.0772 2.9545 -10.2622 20 1 -4.3627 0.5830 -10.6802 21 1 -5.1469 1.5504 -8.5994 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.0130 4.1696 1.2874 28 1 2.8784 2.2442 -3.1252 29 1 2.3050 0.6436 -2.5984 30 1 1.2653 2.0826 -5.3694 31 1 0.6917 0.4822 -4.8419 32 1 -1.6485 1.3005 -4.9065 33 1 -1.0743 2.9007 -5.4339 34 1 -0.0825 1.8771 -7.4626 35 1 -0.6566 0.2767 -6.9359 36 1 -1.6330 0.4485 -10.4823 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322139817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:56 Heat of formation + Delta-G solvation = 7.998866 kcal Electronic energy + Delta-G solvation = -18129.507971 eV Core-core repulsion = 15161.907624 eV Total energy + Delta-G solvation = -2967.600347 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.14677 -36.96000 -36.29422 -36.01546 -34.01423 -33.67204 -31.19688 -29.56140 -29.04161 -25.42487 -24.90445 -22.85421 -22.24373 -21.28427 -18.75322 -18.34467 -18.08452 -17.15443 -16.56150 -16.41458 -16.13887 -15.81863 -15.76962 -15.05856 -14.78556 -14.52892 -14.32700 -13.89594 -13.73980 -13.53402 -13.20584 -12.97339 -12.75506 -12.69955 -12.52817 -12.46973 -11.96863 -11.93181 -11.59085 -11.33834 -11.16778 -11.06020 -10.75838 -10.54597 -10.38494 -9.33273 -8.19644 -6.30287 0.05662 0.79792 1.35529 1.41298 1.42407 1.53465 1.56430 1.95257 2.41965 2.68435 3.01764 3.13798 3.53853 3.77371 4.04568 4.06407 4.18332 4.19488 4.38379 4.44600 4.58951 4.64268 4.87490 4.93035 4.97619 5.17266 5.20585 5.33038 5.39256 5.41674 5.52281 5.73182 5.82642 5.86026 6.25390 6.86706 7.05502 7.39010 8.91691 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.039127 B = 0.003392 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.448436 B = 8252.811179 C = 8458.759366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 N -0.364 5.364 4 N -0.335 5.335 5 C 0.188 3.812 6 N -0.585 5.585 7 C 0.288 3.712 8 C -0.381 4.381 9 S 1.301 4.699 10 O -0.899 6.899 11 C -0.435 4.435 12 C -0.091 4.091 13 C 0.027 3.973 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.961 3.039 19 H -0.279 1.279 20 H -0.279 1.279 21 H -0.260 1.260 22 H 0.118 0.882 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.140 0.860 26 H 0.111 0.889 27 H 0.241 0.759 28 H 0.116 0.884 29 H 0.195 0.805 30 H 0.070 0.930 31 H 0.159 0.841 32 H 0.088 0.912 33 H 0.028 0.972 34 H -0.019 1.019 35 H 0.014 0.986 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 -7.656 20.863 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 N -0.156 5.156 4 N -0.163 5.163 5 C -0.114 4.114 6 N -0.314 5.314 7 C 0.011 3.989 8 C -0.518 4.518 9 S 1.499 4.501 10 O -0.894 6.894 11 C -0.574 4.574 12 C -0.130 4.130 13 C -0.011 4.011 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.786 3.214 19 H -0.205 1.205 20 H -0.204 1.204 21 H -0.184 1.184 22 H 0.137 0.863 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.158 0.842 26 H 0.130 0.870 27 H 0.257 0.743 28 H 0.134 0.866 29 H 0.212 0.788 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.000 1.000 35 H 0.033 0.967 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.541 -7.279 21.802 23.643 hybrid contribution 1.045 1.611 -2.125 2.864 sum 6.586 -5.668 19.677 21.510 Atomic orbital electron populations 1.22366 0.92741 1.05824 1.02819 1.22515 0.96616 0.75114 1.07716 1.50797 1.48188 1.14188 1.02446 1.77946 1.24043 1.05135 1.09197 1.26485 0.97919 0.97054 0.89970 1.70478 1.26034 1.21870 1.13045 1.23308 0.96147 0.87534 0.91889 1.26518 1.21914 1.12154 0.91172 1.69951 0.91963 0.95271 0.92873 1.93066 1.78672 1.33393 1.84249 1.27683 1.02330 1.11293 1.16049 1.21145 0.94868 0.99510 0.97463 1.19022 0.94929 0.95787 0.91365 1.21763 0.99865 1.39523 0.97448 0.92270 1.25935 1.00856 0.94856 0.98012 1.70077 1.34729 1.42680 1.09690 0.85509 0.79757 0.77797 0.78387 1.20530 1.20419 1.18373 0.86324 0.93201 0.91506 0.84178 0.87026 0.74331 0.86571 0.78802 0.91095 0.82269 0.89394 0.95323 1.00016 0.96717 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 10.24 71.98 0.74 -0.54 16 2 C 0.10 0.81 7.02 86.38 0.61 1.42 16 3 N -0.36 -6.95 3.64 -338.49 -1.23 -8.18 16 4 N -0.33 -7.94 12.70 -61.25 -0.78 -8.72 16 5 C 0.19 4.65 13.03 180.77 2.36 7.01 16 6 N -0.58 -17.45 11.19 -191.78 -2.15 -19.60 16 7 C 0.29 6.75 7.24 138.22 1.00 7.75 16 8 C -0.38 -6.69 6.25 71.23 0.44 -6.25 16 9 S 1.30 30.32 12.50 -56.49 -0.71 29.62 16 10 O -0.90 -35.60 18.14 -148.98 -2.70 -38.31 16 11 C -0.44 -11.92 5.92 71.98 0.43 -11.49 16 12 C -0.09 -3.52 5.16 30.60 0.16 -3.36 16 13 C 0.03 1.38 4.97 29.85 0.15 1.53 16 14 C -0.55 -30.80 9.11 25.60 0.23 -30.56 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.08 5.46 84.66 0.46 0.54 16 17 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 18 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 23 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.07 0.49 7.49 -2.39 -0.02 0.47 16 25 H 0.14 0.08 7.10 -2.39 -0.02 0.06 16 26 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.24 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.19 1.05 7.12 -2.39 -0.02 1.03 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.16 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 35 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -89.75 323.95 2.38 -87.37 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 1.06 Total: 1.37 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 6.57 Total: -33.96 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -3.87 Total: -91.89 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -2.70 Total: -38.31 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 30.32 SS G_CDS: -0.71 Total: 29.62 kcal Total: -89.75 2.38 -87.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322139817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.368 kcal (2) G-P(sol) polarization free energy of solvation -89.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds