Wall clock time and date at job start Mon Mar 30 2020 00:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47402 * 2 1 4 4 N 1.40449 * 126.82053 * 84.62305 * 3 2 1 5 5 C 1.30712 * 106.79417 * 179.97438 * 4 3 2 6 6 N 1.33244 * 108.94530 * 359.97438 * 5 4 3 7 7 C 1.30835 * 109.82890 * 0.02562 * 6 5 4 8 8 C 1.50701 * 125.96147 * 180.02562 * 7 6 5 9 9 S 1.81402 * 109.47098 * 90.94898 * 8 7 6 10 10 O 1.42101 * 109.46979 * 291.28924 * 9 8 7 11 11 C 1.81394 * 103.00097 * 174.90457 * 9 8 7 12 12 C 1.52995 * 109.47541 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47621 * 179.97438 * 12 11 9 14 14 C 1.50694 * 109.47305 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00328 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00259 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99546 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00357 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47128 * 60.00116 * 18 16 14 20 20 H 1.48496 * 109.47271 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46906 * 300.00275 * 18 16 14 22 22 H 1.08998 * 109.46889 * 55.92898 * 1 2 3 23 23 H 1.08996 * 109.47194 * 175.93006 * 1 2 3 24 24 H 1.08998 * 109.47005 * 295.93145 * 1 2 3 25 25 H 1.09003 * 109.47229 * 239.99684 * 2 1 3 26 26 H 1.09001 * 109.47276 * 120.00886 * 2 1 3 27 27 H 1.07999 * 125.52846 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47074 * 210.94610 * 8 7 6 29 29 H 1.08997 * 109.46923 * 330.94643 * 8 7 6 30 30 H 1.09011 * 109.46806 * 299.99935 * 11 9 8 31 31 H 1.08998 * 109.47787 * 59.99690 * 11 9 8 32 32 H 1.09003 * 109.47271 * 299.99980 * 12 11 9 33 33 H 1.09001 * 109.47109 * 59.99822 * 12 11 9 34 34 H 1.08997 * 109.47099 * 299.99988 * 13 12 11 35 35 H 1.09001 * 109.46767 * 59.99928 * 13 12 11 36 36 H 0.97001 * 119.99606 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1997 2.2099 1.1194 5 6 2.6492 3.3535 0.6738 6 7 2.7593 3.2879 -0.6525 7 6 2.3830 2.1069 -1.0712 8 6 2.3626 1.6410 -2.5042 9 16 3.9492 0.8601 -2.9087 10 8 4.9716 1.8468 -2.9277 11 6 3.6799 0.2361 -4.5906 12 6 4.9481 -0.4626 -5.0846 13 6 4.7207 -0.9894 -6.5029 14 6 5.9702 -1.6771 -6.9897 15 1 6.8394 -1.7333 -6.3511 16 6 6.0034 -2.2356 -8.2499 17 7 4.9447 -2.1677 -9.0273 18 14 7.5519 -3.0887 -8.8530 19 1 7.8765 -4.2219 -7.9498 20 1 7.3312 -3.5999 -10.2296 21 1 8.6791 -2.1220 -8.8592 22 1 -0.3633 0.5757 -0.8513 23 1 -0.3633 -1.0250 -0.0729 24 1 -0.3633 0.4494 0.9242 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 2.8919 4.2124 1.2819 28 1 1.5573 0.9192 -2.6403 29 1 2.2000 2.4951 -3.1616 30 1 2.8525 -0.4736 -4.5867 31 1 3.4416 1.0682 -5.2531 32 1 5.7758 0.2467 -5.0885 33 1 5.1859 -1.2949 -4.4221 34 1 3.8933 -1.6989 -6.4987 35 1 4.4827 -0.1574 -7.1657 36 1 4.9679 -2.5610 -9.9137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322139818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:57 Heat of formation + Delta-G solvation = 35.565785 kcal Electronic energy + Delta-G solvation = -18003.110315 eV Core-core repulsion = 15036.705359 eV Total energy + Delta-G solvation = -2966.404955 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.27392 -35.65216 -35.36236 -34.50866 -32.79217 -32.08262 -30.55595 -28.42624 -27.51039 -24.39747 -23.51752 -21.97221 -20.86935 -20.17642 -17.63773 -17.22200 -16.49580 -16.12154 -15.39198 -15.19617 -14.93956 -14.65263 -14.41030 -14.29823 -13.86136 -13.39830 -13.27477 -12.59901 -12.53698 -12.38672 -12.09768 -11.98413 -11.56736 -11.46791 -10.92269 -10.86830 -10.78338 -10.45500 -10.12399 -9.94480 -9.86575 -9.78299 -9.28361 -9.08360 -8.39246 -8.19057 -6.04485 -4.07365 1.03804 1.72540 2.07190 2.58884 2.88024 3.31592 3.35971 3.38859 3.70376 3.87575 4.17166 4.42983 4.52727 4.56444 4.67752 4.83362 5.10807 5.14958 5.31007 5.34596 5.36868 5.40413 5.47863 5.66676 6.08445 6.10749 6.27006 6.42155 6.57189 6.60827 6.96781 7.60165 7.72208 7.94329 7.94535 8.35837 8.99257 9.57164 11.06686 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.003327 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.362654 B = 8415.157232 C = 8763.474251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.115 3.885 3 N -0.374 5.374 4 N -0.320 5.320 5 C 0.200 3.800 6 N -0.537 5.537 7 C 0.305 3.695 8 C -0.391 4.391 9 S 1.240 4.760 10 O -0.822 6.822 11 C -0.433 4.433 12 C -0.094 4.094 13 C 0.028 3.972 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.217 0.783 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.015 0.985 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.815 2.077 18.917 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.167 5.167 4 N -0.148 5.148 5 C -0.103 4.103 6 N -0.266 5.266 7 C 0.028 3.972 8 C -0.526 4.526 9 S 1.436 4.564 10 O -0.816 6.816 11 C -0.572 4.572 12 C -0.134 4.134 13 C -0.011 4.011 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.233 0.767 28 H 0.154 0.846 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.150 2.051 19.905 22.437 hybrid contribution 0.119 1.131 -2.053 2.347 sum -10.031 3.182 17.852 20.722 Atomic orbital electron populations 1.22179 0.93796 1.03564 1.03342 1.21938 0.95805 0.77338 1.05569 1.50463 1.49092 1.13105 1.04008 1.78016 1.24844 1.03700 1.08221 1.25964 0.97343 0.96633 0.90383 1.70534 1.25234 1.19032 1.11767 1.23098 0.95228 0.87942 0.90895 1.26552 1.22683 1.11341 0.92022 1.70822 0.81241 1.05147 0.99147 1.93188 1.44055 1.60577 1.83810 1.27703 1.06989 1.07491 1.15061 1.21342 0.92573 0.98445 1.00997 1.19087 0.97200 0.95975 0.88807 1.21231 0.99148 1.35876 1.00050 0.92564 1.25024 0.96295 0.96267 0.96809 1.69953 1.28805 1.45466 1.09308 0.86636 0.83517 0.79942 0.77812 1.20107 1.21277 1.20208 0.91908 0.89825 0.91623 0.87548 0.87916 0.76655 0.84608 0.85897 0.86510 0.89510 0.92651 0.92054 0.96182 0.96631 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.12 0.68 6.95 -4.04 -0.03 0.65 16 3 N -0.37 -3.93 3.64 -58.34 -0.21 -4.14 16 4 N -0.32 -3.90 12.70 29.29 0.37 -3.53 16 5 C 0.20 2.46 13.03 -91.81 -1.20 1.26 16 6 N -0.54 -7.96 11.19 -11.97 -0.13 -8.10 16 7 C 0.30 3.77 7.24 -155.69 -1.13 2.64 16 8 C -0.39 -3.96 5.99 36.01 0.22 -3.74 16 9 S 1.24 15.18 13.14 -107.50 -1.41 13.77 16 10 O -0.82 -15.94 18.14 -35.23 -0.64 -16.58 16 11 C -0.43 -6.19 5.92 37.16 0.22 -5.97 16 12 C -0.09 -1.83 5.16 -26.74 -0.14 -1.97 16 13 C 0.03 0.69 4.97 -27.89 -0.14 0.55 16 14 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.11 0.31 7.49 -51.93 -0.39 -0.08 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.22 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.14 0.78 7.68 -51.93 -0.40 0.38 16 29 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.12 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -39.33 325.86 -9.03 -48.35 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.40 Total: -4.83 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.22 Total: -20.47 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.76 Total: -41.54 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.64 Total: -16.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 15.18 SS G_CDS: -1.41 Total: 13.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -39.33 -9.03 -48.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322139818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.918 kcal (2) G-P(sol) polarization free energy of solvation -39.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds