Wall clock time and date at job start Mon Mar 30 2020 00:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47402 * 2 1 4 4 N 1.40449 * 126.82053 * 84.62305 * 3 2 1 5 5 C 1.30712 * 106.79417 * 179.97438 * 4 3 2 6 6 N 1.33244 * 108.94530 * 359.97438 * 5 4 3 7 7 C 1.30835 * 109.82890 * 0.02562 * 6 5 4 8 8 C 1.50701 * 125.96147 * 180.02562 * 7 6 5 9 9 S 1.81402 * 109.47098 * 90.94898 * 8 7 6 10 10 O 1.42101 * 109.46979 * 291.28924 * 9 8 7 11 11 C 1.81394 * 103.00097 * 174.90457 * 9 8 7 12 12 C 1.52995 * 109.47541 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47621 * 179.97438 * 12 11 9 14 14 C 1.50694 * 109.47305 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00328 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00259 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99546 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00357 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47128 * 60.00116 * 18 16 14 20 20 H 1.48496 * 109.47271 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46906 * 300.00275 * 18 16 14 22 22 H 1.08998 * 109.46889 * 55.92898 * 1 2 3 23 23 H 1.08996 * 109.47194 * 175.93006 * 1 2 3 24 24 H 1.08998 * 109.47005 * 295.93145 * 1 2 3 25 25 H 1.09003 * 109.47229 * 239.99684 * 2 1 3 26 26 H 1.09001 * 109.47276 * 120.00886 * 2 1 3 27 27 H 1.07999 * 125.52846 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47074 * 210.94610 * 8 7 6 29 29 H 1.08997 * 109.46923 * 330.94643 * 8 7 6 30 30 H 1.09011 * 109.46806 * 299.99935 * 11 9 8 31 31 H 1.08998 * 109.47787 * 59.99690 * 11 9 8 32 32 H 1.09003 * 109.47271 * 299.99980 * 12 11 9 33 33 H 1.09001 * 109.47109 * 59.99822 * 12 11 9 34 34 H 1.08997 * 109.47099 * 299.99988 * 13 12 11 35 35 H 1.09001 * 109.46767 * 59.99928 * 13 12 11 36 36 H 0.97001 * 119.99606 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1997 2.2099 1.1194 5 6 2.6492 3.3535 0.6738 6 7 2.7593 3.2879 -0.6525 7 6 2.3830 2.1069 -1.0712 8 6 2.3626 1.6410 -2.5042 9 16 3.9492 0.8601 -2.9087 10 8 4.9716 1.8468 -2.9277 11 6 3.6799 0.2361 -4.5906 12 6 4.9481 -0.4626 -5.0846 13 6 4.7207 -0.9894 -6.5029 14 6 5.9702 -1.6771 -6.9897 15 1 6.8394 -1.7333 -6.3511 16 6 6.0034 -2.2356 -8.2499 17 7 4.9447 -2.1677 -9.0273 18 14 7.5519 -3.0887 -8.8530 19 1 7.8765 -4.2219 -7.9498 20 1 7.3312 -3.5999 -10.2296 21 1 8.6791 -2.1220 -8.8592 22 1 -0.3633 0.5757 -0.8513 23 1 -0.3633 -1.0250 -0.0729 24 1 -0.3633 0.4494 0.9242 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 2.8919 4.2124 1.2819 28 1 1.5573 0.9192 -2.6403 29 1 2.2000 2.4951 -3.1616 30 1 2.8525 -0.4736 -4.5867 31 1 3.4416 1.0682 -5.2531 32 1 5.7758 0.2467 -5.0885 33 1 5.1859 -1.2949 -4.4221 34 1 3.8933 -1.6989 -6.4987 35 1 4.4827 -0.1574 -7.1657 36 1 4.9679 -2.5610 -9.9137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322139818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:57 Heat of formation + Delta-G solvation = 7.842729 kcal Electronic energy + Delta-G solvation = -18004.312477 eV Core-core repulsion = 15036.705359 eV Total energy + Delta-G solvation = -2967.607117 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.13880 -36.95498 -36.28637 -36.01232 -34.00813 -33.66713 -31.21755 -29.56376 -29.03245 -25.40687 -24.93319 -22.80949 -22.24021 -21.29799 -18.77063 -18.34693 -18.01857 -17.17740 -16.56167 -16.37704 -16.11415 -15.85108 -15.73098 -15.02092 -14.85406 -14.48418 -14.31419 -13.92099 -13.78820 -13.49543 -13.14209 -13.04275 -12.78538 -12.66614 -12.53792 -12.50115 -12.02297 -11.91627 -11.57513 -11.33439 -11.16710 -11.05485 -10.75669 -10.53502 -10.37248 -9.32783 -8.19347 -6.30041 0.06355 0.80683 1.36426 1.41554 1.44155 1.51889 1.58002 1.96196 2.42209 2.70278 3.01414 3.14006 3.53844 3.78513 4.07556 4.08281 4.15485 4.20537 4.37230 4.49327 4.53303 4.65395 4.88560 4.89092 4.92023 5.18649 5.21558 5.30808 5.32968 5.41971 5.52598 5.73912 5.82801 5.86502 6.25724 6.86928 7.06323 7.39228 8.91770 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.003327 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.362654 B = 8415.157232 C = 8763.474251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.364 5.364 4 N -0.334 5.334 5 C 0.189 3.811 6 N -0.585 5.585 7 C 0.290 3.710 8 C -0.381 4.381 9 S 1.307 4.693 10 O -0.899 6.899 11 C -0.435 4.435 12 C -0.091 4.091 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.274 1.274 22 H 0.058 0.942 23 H 0.111 0.889 24 H 0.047 0.953 25 H 0.143 0.857 26 H 0.115 0.885 27 H 0.241 0.759 28 H 0.190 0.810 29 H 0.114 0.886 30 H 0.159 0.841 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.088 0.912 34 H 0.014 0.986 35 H -0.019 1.019 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 0.308 19.942 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.156 5.156 4 N -0.162 5.162 5 C -0.114 4.114 6 N -0.314 5.314 7 C 0.013 3.987 8 C -0.518 4.518 9 S 1.505 4.495 10 O -0.894 6.894 11 C -0.573 4.573 12 C -0.130 4.130 13 C -0.011 4.011 14 C -0.587 4.587 15 H 0.077 0.923 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.785 3.215 19 H -0.185 1.185 20 H -0.208 1.208 21 H -0.200 1.200 22 H 0.077 0.923 23 H 0.129 0.871 24 H 0.066 0.934 25 H 0.161 0.839 26 H 0.133 0.867 27 H 0.257 0.743 28 H 0.208 0.792 29 H 0.133 0.867 30 H 0.177 0.823 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.033 0.967 35 H 0.000 1.000 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.919 0.245 20.929 23.608 hybrid contribution 0.232 1.684 -2.296 2.857 sum -10.687 1.929 18.634 21.567 Atomic orbital electron populations 1.22171 0.93019 1.05032 1.02231 1.22555 0.96515 0.75214 1.08080 1.50768 1.47780 1.14122 1.02925 1.77951 1.24967 1.03979 1.09333 1.26492 0.97265 0.97582 0.90029 1.70485 1.26718 1.21023 1.13199 1.23284 0.95577 0.87970 0.91822 1.26489 1.22224 1.12321 0.90746 1.69895 0.80319 1.03408 0.95870 1.93064 1.48867 1.63244 1.84246 1.27676 1.05825 1.07721 1.16094 1.21143 0.94324 0.99084 0.98456 1.19017 0.95974 0.94479 0.91610 1.21745 1.00350 1.36027 1.00599 0.92269 1.25935 0.99599 0.97033 0.97073 1.70073 1.30932 1.46474 1.09710 0.85564 0.79295 0.79092 0.77516 1.18491 1.20818 1.19969 0.92293 0.87095 0.93403 0.83929 0.86703 0.74307 0.79218 0.86740 0.82274 0.91082 0.95311 0.89374 0.96742 1.00034 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 71.98 0.74 -0.40 16 2 C 0.10 0.78 6.95 86.38 0.60 1.38 16 3 N -0.36 -6.80 3.64 -338.49 -1.23 -8.03 16 4 N -0.33 -7.75 12.70 -61.24 -0.78 -8.53 16 5 C 0.19 4.55 13.03 180.76 2.36 6.90 16 6 N -0.58 -17.05 11.19 -191.78 -2.15 -19.20 16 7 C 0.29 6.65 7.24 138.23 1.00 7.65 16 8 C -0.38 -6.63 5.99 71.24 0.43 -6.20 16 9 S 1.31 29.55 13.14 -56.49 -0.74 28.81 16 10 O -0.90 -35.11 18.14 -148.98 -2.70 -37.82 16 11 C -0.44 -11.64 5.92 71.98 0.43 -11.22 16 12 C -0.09 -3.49 5.16 30.59 0.16 -3.33 16 13 C 0.03 1.39 4.97 29.85 0.15 1.54 16 14 C -0.55 -30.80 9.11 25.60 0.23 -30.57 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 18 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 24 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.14 0.09 7.49 -2.39 -0.02 0.08 16 26 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.24 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.19 1.16 7.68 -2.39 -0.02 1.14 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.16 2.86 8.14 -2.38 -0.02 2.84 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -89.18 325.86 2.31 -86.86 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 1.05 Total: 1.23 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 6.55 Total: -33.69 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -3.87 Total: -91.12 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -2.70 Total: -37.82 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 29.55 SS G_CDS: -0.74 Total: 28.81 kcal Total: -89.18 2.31 -86.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322139818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.705 kcal (2) G-P(sol) polarization free energy of solvation -89.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds