Wall clock time and date at job start Mon Mar 30 2020 00:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47055 * 2 1 4 4 C 1.36650 * 120.00031 * 264.79221 * 3 2 1 5 5 H 1.08002 * 120.00315 * 144.53740 * 4 3 2 6 6 C 1.39191 * 120.00189 * 324.53442 * 4 3 2 7 7 N 1.31274 * 119.99374 * 338.71130 * 6 4 3 8 8 Si 1.86796 * 120.00228 * 158.70400 * 6 4 3 9 9 H 1.48503 * 109.46812 * 90.00548 * 8 6 4 10 10 H 1.48499 * 109.47125 * 210.00234 * 8 6 4 11 11 H 1.48492 * 109.47153 * 330.00756 * 8 6 4 12 12 C 1.34787 * 120.00040 * 84.78985 * 3 2 1 13 13 O 1.21613 * 119.99718 * 185.52082 * 12 3 2 14 14 C 1.47677 * 119.99740 * 5.52418 * 12 3 2 15 15 N 1.32492 * 120.64628 * 75.01418 * 14 12 3 16 16 N 1.28092 * 123.16336 * 180.02562 * 15 14 12 17 17 C 1.31789 * 123.50378 * 359.48656 * 16 15 14 18 18 C 1.40447 * 119.16301 * 0.75492 * 17 16 15 19 19 C 1.40214 * 122.72258 * 179.24239 * 18 17 16 20 20 C 1.36281 * 119.36554 * 180.02562 * 19 18 17 21 21 C 1.39351 * 121.06606 * 0.02562 * 20 19 18 22 22 C 1.36401 * 121.08091 * 359.97407 * 21 20 19 23 23 C 1.39783 * 119.42236 * 0.25883 * 22 21 20 24 24 H 1.08998 * 109.47263 * 60.00169 * 1 2 3 25 25 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47383 * 299.99855 * 1 2 3 27 27 H 1.08996 * 109.47014 * 240.00238 * 2 1 3 28 28 H 1.08998 * 109.47263 * 119.99831 * 2 1 3 29 29 H 0.97003 * 119.99300 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.41832 * 180.02562 * 17 16 15 31 31 H 1.08001 * 120.32108 * 0.04139 * 19 18 17 32 32 H 1.07998 * 119.46810 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.46146 * 179.97438 * 21 20 19 34 34 H 1.07995 * 120.28869 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3473 1.9896 -1.1785 5 1 2.1552 3.0437 -1.3142 6 6 2.9302 1.2508 -2.2042 7 7 3.5411 0.1208 -1.9337 8 14 2.8429 1.8672 -3.9654 9 1 4.0219 2.7244 -4.2488 10 1 2.8376 0.7094 -4.8953 11 1 1.5998 2.6577 -4.1520 12 6 2.1430 2.0519 1.1625 13 8 2.4516 3.2282 1.1556 14 6 1.9049 1.3583 2.4443 15 7 2.8013 0.5130 2.9314 16 7 2.6444 -0.1145 4.0371 17 6 1.5836 0.0224 4.8070 18 6 0.5521 0.8861 4.4038 19 6 -0.6153 1.0759 5.1567 20 6 -1.5734 1.9308 4.7002 21 6 -1.4110 2.6174 3.4986 22 6 -0.2878 2.4560 2.7416 23 6 0.7138 1.5833 3.1764 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9470 -0.3942 -2.6485 30 1 1.5031 -0.5317 5.7306 31 1 -0.7539 0.5498 6.0897 32 1 -2.4735 2.0779 5.2787 33 1 -2.1870 3.2884 3.1611 34 1 -0.1754 2.9943 1.8121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528404854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:23 Heat of formation + Delta-G solvation = 50.660940 kcal Electronic energy + Delta-G solvation = -20660.179864 eV Core-core repulsion = 17558.985533 eV Total energy + Delta-G solvation = -3101.194332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18496 -38.44896 -37.82490 -35.13058 -33.21047 -32.00455 -31.62094 -30.30387 -29.57887 -26.09962 -24.54609 -24.11069 -22.85228 -22.12121 -19.91541 -18.10927 -17.94785 -17.05951 -16.53580 -15.86489 -15.17151 -14.81280 -14.68427 -14.19150 -14.13485 -13.82236 -13.62884 -13.01539 -12.73934 -12.48338 -12.24756 -11.92275 -11.78268 -11.52747 -11.20689 -11.04279 -10.79516 -10.54291 -10.39879 -10.29112 -10.16192 -9.35680 -9.29333 -9.04975 -8.73974 -8.31762 -7.60885 -6.40728 -4.04492 0.30462 0.73401 1.82819 3.00471 3.11710 3.22745 3.27719 3.48258 3.97316 4.05914 4.29237 4.48845 4.57705 4.63600 4.74778 4.91605 5.02848 5.05935 5.19216 5.56300 5.57805 5.71342 5.82519 5.87620 5.92535 6.13921 6.20952 6.26998 6.37752 6.40120 6.50441 6.68322 6.80128 7.20352 7.51703 8.10476 8.36484 8.99800 9.10170 9.25025 9.81566 10.62447 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.006134 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.600441 B = 4563.290589 C = 4922.171132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.408 5.408 4 C -0.320 4.320 5 H 0.098 0.902 6 C 0.041 3.959 7 N -0.856 5.856 8 Si 0.922 3.078 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.504 3.496 13 O -0.565 6.565 14 C 0.123 3.877 15 N -0.236 5.236 16 N -0.259 5.259 17 C 0.068 3.932 18 C -0.079 4.079 19 C -0.098 4.098 20 C -0.099 4.099 21 C -0.108 4.108 22 C -0.071 4.071 23 C -0.062 4.062 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.271 0.729 30 H 0.174 0.826 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 -1.499 10.249 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.032 4.032 3 N -0.125 5.125 4 C -0.447 4.447 5 H 0.115 0.885 6 C -0.165 4.165 7 N -0.492 5.492 8 Si 0.748 3.252 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.289 3.711 13 O -0.448 6.448 14 C -0.035 4.035 15 N -0.071 5.071 16 N -0.090 5.090 17 C -0.108 4.108 18 C -0.087 4.087 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.091 4.091 23 C -0.070 4.070 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.134 0.866 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.191 0.809 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.167 -1.880 9.847 14.279 hybrid contribution -1.367 0.714 -0.438 1.603 sum -11.534 -1.166 9.409 14.931 Atomic orbital electron populations 1.22229 0.97962 1.00627 1.01514 1.21666 0.91717 0.85160 1.04620 1.43271 1.53280 1.11695 1.04220 1.19446 1.40015 0.96387 0.88863 0.88464 1.25462 0.93959 0.96315 1.00774 1.69901 1.30444 1.15342 1.33531 0.86018 0.79209 0.78460 0.81546 1.20046 1.20670 1.19196 1.17495 0.84067 0.87521 0.82042 1.90676 1.52783 1.15339 1.85966 1.23728 0.90092 0.92430 0.97299 1.73071 1.24820 1.03764 1.05444 1.72668 1.19827 1.16619 0.99904 1.24640 0.90320 0.95603 1.00204 1.18870 0.96742 0.98097 0.94966 1.20909 0.92457 0.98913 0.99548 1.21035 0.99043 0.95746 0.96049 1.21074 0.97682 0.99401 0.94624 1.21119 0.92177 0.95612 1.00219 1.18831 0.95577 0.97847 0.94712 0.91987 0.92908 0.94204 0.86569 0.93122 0.91826 0.80926 0.84520 0.85215 0.85046 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.20 37.16 0.38 -2.74 16 2 C 0.09 2.14 5.47 -4.04 -0.02 2.12 16 3 N -0.41 -10.64 2.54 -115.96 -0.29 -10.94 16 4 C -0.32 -8.81 8.97 -15.05 -0.14 -8.94 16 5 H 0.10 2.74 7.68 -52.49 -0.40 2.34 16 6 C 0.04 1.08 4.93 -17.44 -0.09 0.99 16 7 N -0.86 -23.19 11.37 55.51 0.63 -22.56 16 8 Si 0.92 20.16 29.60 -169.99 -5.03 15.13 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 C 0.50 13.10 6.10 -12.40 -0.08 13.03 16 13 O -0.57 -16.27 16.93 5.27 0.09 -16.18 16 14 C 0.12 2.76 5.01 -82.44 -0.41 2.35 16 15 N -0.24 -5.43 10.73 33.54 0.36 -5.07 16 16 N -0.26 -5.05 11.41 30.91 0.35 -4.70 16 17 C 0.07 1.00 11.20 -16.74 -0.19 0.82 16 18 C -0.08 -1.18 5.75 -106.85 -0.61 -1.80 16 19 C -0.10 -1.05 9.84 -39.54 -0.39 -1.44 16 20 C -0.10 -0.98 9.95 -39.87 -0.40 -1.38 16 21 C -0.11 -1.28 9.95 -39.83 -0.40 -1.68 16 22 C -0.07 -1.15 8.63 -39.67 -0.34 -1.49 16 23 C -0.06 -1.13 5.24 -106.56 -0.56 -1.68 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.72 6.62 -51.93 -0.34 0.37 16 27 H 0.12 2.90 5.42 -51.93 -0.28 2.62 16 28 H 0.05 1.19 6.49 -51.93 -0.34 0.85 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 2.47 7.33 -52.49 -0.38 2.08 16 LS Contribution 295.50 15.07 4.45 4.45 Total: -1.00 -33.23 295.50 -6.10 -39.33 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.42 Total: 2.38 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -3.24 Total: -1.85 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.05 Total: -43.27 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.09 Total: -16.18 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.23 -6.10 -39.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528404854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.992 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds