Wall clock time and date at job start Mon Mar 30 2020 00:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47055 * 2 1 4 4 C 1.36650 * 120.00031 * 264.79221 * 3 2 1 5 5 H 1.08002 * 120.00315 * 144.53740 * 4 3 2 6 6 C 1.39191 * 120.00189 * 324.53442 * 4 3 2 7 7 N 1.31274 * 119.99374 * 338.71130 * 6 4 3 8 8 Si 1.86796 * 120.00228 * 158.70400 * 6 4 3 9 9 H 1.48503 * 109.46812 * 90.00548 * 8 6 4 10 10 H 1.48499 * 109.47125 * 210.00234 * 8 6 4 11 11 H 1.48492 * 109.47153 * 330.00756 * 8 6 4 12 12 C 1.34787 * 120.00040 * 84.78985 * 3 2 1 13 13 O 1.21613 * 119.99718 * 185.52082 * 12 3 2 14 14 C 1.47677 * 119.99740 * 5.52418 * 12 3 2 15 15 N 1.32492 * 120.64628 * 75.01418 * 14 12 3 16 16 N 1.28092 * 123.16336 * 180.02562 * 15 14 12 17 17 C 1.31789 * 123.50378 * 359.48656 * 16 15 14 18 18 C 1.40447 * 119.16301 * 0.75492 * 17 16 15 19 19 C 1.40214 * 122.72258 * 179.24239 * 18 17 16 20 20 C 1.36281 * 119.36554 * 180.02562 * 19 18 17 21 21 C 1.39351 * 121.06606 * 0.02562 * 20 19 18 22 22 C 1.36401 * 121.08091 * 359.97407 * 21 20 19 23 23 C 1.39783 * 119.42236 * 0.25883 * 22 21 20 24 24 H 1.08998 * 109.47263 * 60.00169 * 1 2 3 25 25 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47383 * 299.99855 * 1 2 3 27 27 H 1.08996 * 109.47014 * 240.00238 * 2 1 3 28 28 H 1.08998 * 109.47263 * 119.99831 * 2 1 3 29 29 H 0.97003 * 119.99300 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.41832 * 180.02562 * 17 16 15 31 31 H 1.08001 * 120.32108 * 0.04139 * 19 18 17 32 32 H 1.07998 * 119.46810 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.46146 * 179.97438 * 21 20 19 34 34 H 1.07995 * 120.28869 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3473 1.9896 -1.1785 5 1 2.1552 3.0437 -1.3142 6 6 2.9302 1.2508 -2.2042 7 7 3.5411 0.1208 -1.9337 8 14 2.8429 1.8672 -3.9654 9 1 4.0219 2.7244 -4.2488 10 1 2.8376 0.7094 -4.8953 11 1 1.5998 2.6577 -4.1520 12 6 2.1430 2.0519 1.1625 13 8 2.4516 3.2282 1.1556 14 6 1.9049 1.3583 2.4443 15 7 2.8013 0.5130 2.9314 16 7 2.6444 -0.1145 4.0371 17 6 1.5836 0.0224 4.8070 18 6 0.5521 0.8861 4.4038 19 6 -0.6153 1.0759 5.1567 20 6 -1.5734 1.9308 4.7002 21 6 -1.4110 2.6174 3.4986 22 6 -0.2878 2.4560 2.7416 23 6 0.7138 1.5833 3.1764 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9470 -0.3942 -2.6485 30 1 1.5031 -0.5317 5.7306 31 1 -0.7539 0.5498 6.0897 32 1 -2.4735 2.0779 5.2787 33 1 -2.1870 3.2884 3.1611 34 1 -0.1754 2.9943 1.8121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528404854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:22 Heat of formation + Delta-G solvation = 27.435211 kcal Electronic energy + Delta-G solvation = -20661.187008 eV Core-core repulsion = 17558.985533 eV Total energy + Delta-G solvation = -3102.201475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.49527 -40.30401 -38.98990 -37.12842 -34.66568 -33.84117 -32.79273 -31.53549 -31.32528 -27.84967 -26.11174 -25.32860 -24.34250 -23.60752 -21.55945 -19.42211 -19.25014 -18.85456 -18.17397 -17.41767 -16.83750 -16.44127 -15.83987 -15.69082 -15.50934 -15.36204 -14.86777 -14.73115 -14.49439 -13.72692 -13.72160 -13.58814 -13.16839 -12.96049 -12.83530 -12.58526 -12.46288 -12.16663 -12.10415 -11.98330 -11.63917 -11.02741 -10.71831 -10.68058 -10.36441 -9.64500 -9.50012 -8.43636 -6.17446 -0.87555 -0.41153 0.68332 1.30598 1.40378 1.55032 1.64177 1.90401 2.21640 2.61148 2.84591 2.88573 3.31766 3.36713 3.42704 3.63144 3.75245 4.03404 4.16077 4.19845 4.26154 4.42650 4.48192 4.61310 4.64439 4.82841 4.84547 4.91630 5.10074 5.24453 5.31486 5.33211 5.36838 5.41798 5.76927 6.06026 6.34391 6.95635 7.22856 7.71484 7.81913 8.59784 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.006134 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.600441 B = 4563.290589 C = 4922.171132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.098 3.902 3 N -0.418 5.418 4 C -0.356 4.356 5 H 0.077 0.923 6 C 0.005 3.995 7 N -0.884 5.884 8 Si 0.994 3.006 9 H -0.276 1.276 10 H -0.264 1.264 11 H -0.260 1.260 12 C 0.499 3.501 13 O -0.616 6.616 14 C 0.091 3.909 15 N -0.281 5.281 16 N -0.305 5.305 17 C 0.098 3.902 18 C -0.095 4.095 19 C -0.073 4.073 20 C -0.088 4.088 21 C -0.079 4.079 22 C -0.116 4.116 23 C -0.080 4.080 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.041 0.959 29 H 0.279 0.721 30 H 0.232 0.768 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.163 0.837 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 -2.475 12.763 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 N -0.134 5.134 4 C -0.484 4.484 5 H 0.094 0.906 6 C -0.199 4.199 7 N -0.520 5.520 8 Si 0.815 3.185 9 H -0.201 1.201 10 H -0.188 1.188 11 H -0.184 1.184 12 C 0.285 3.715 13 O -0.502 6.502 14 C -0.068 4.068 15 N -0.114 5.114 16 N -0.135 5.135 17 C -0.077 4.077 18 C -0.102 4.102 19 C -0.092 4.092 20 C -0.107 4.107 21 C -0.098 4.098 22 C -0.136 4.136 23 C -0.087 4.087 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.248 0.752 31 H 0.209 0.791 32 H 0.201 0.799 33 H 0.180 0.820 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.780 -2.900 12.369 18.743 hybrid contribution -0.390 1.018 -0.992 1.474 sum -14.171 -1.882 11.377 18.270 Atomic orbital electron populations 1.22092 0.94560 1.02613 1.01628 1.21645 0.94458 0.83473 1.02996 1.43501 1.53246 1.12517 1.04143 1.19520 1.42106 0.96142 0.90597 0.90564 1.26366 0.92643 0.96245 1.04598 1.69988 1.30529 1.16329 1.35128 0.84965 0.79203 0.78353 0.75950 1.20150 1.18845 1.18375 1.18044 0.82782 0.87117 0.83576 1.90588 1.54841 1.17498 1.87232 1.23070 0.92877 0.94385 0.96501 1.72875 1.26229 1.04767 1.07561 1.72542 1.22709 1.18111 1.00143 1.25549 0.88187 0.93699 1.00276 1.19238 0.98726 0.98023 0.94203 1.21542 0.89797 0.97791 1.00106 1.21653 1.00474 0.93705 0.94844 1.21553 0.95904 0.98092 0.94241 1.20970 0.94389 0.97435 1.00816 1.18926 0.94481 0.99263 0.96070 0.92341 0.89786 0.93572 0.88530 0.94060 0.91146 0.75178 0.79144 0.79851 0.81954 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 10.20 71.98 0.73 -5.10 16 2 C 0.10 4.80 5.47 86.38 0.47 5.27 16 3 N -0.42 -23.53 2.54 -639.04 -1.62 -25.15 16 4 C -0.36 -21.05 8.97 84.17 0.76 -20.29 16 5 H 0.08 4.69 7.68 -2.91 -0.02 4.67 16 6 C 0.01 0.29 4.93 85.01 0.42 0.71 16 7 N -0.88 -49.89 11.37 21.70 0.25 -49.65 16 8 Si 0.99 42.57 29.60 68.60 2.03 44.60 16 9 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 C 0.50 28.26 6.10 86.74 0.53 28.79 16 13 O -0.62 -38.96 16.93 -4.07 -0.07 -39.03 16 14 C 0.09 4.37 5.01 42.37 0.21 4.59 16 15 N -0.28 -13.69 10.73 -47.79 -0.51 -14.21 16 16 N -0.31 -12.02 11.41 -56.13 -0.64 -12.67 16 17 C 0.10 2.63 11.20 85.24 0.95 3.58 16 18 C -0.09 -2.53 5.75 -21.31 -0.12 -2.66 16 19 C -0.07 -1.08 9.84 22.29 0.22 -0.86 16 20 C -0.09 -1.14 9.95 22.08 0.22 -0.93 16 21 C -0.08 -1.58 9.95 22.11 0.22 -1.36 16 22 C -0.12 -3.77 8.63 22.21 0.19 -3.57 16 23 C -0.08 -2.96 5.24 -21.12 -0.11 -3.07 16 24 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.05 1.71 6.62 -2.39 -0.02 1.70 16 27 H 0.10 5.09 5.42 -2.39 -0.01 5.08 16 28 H 0.04 2.07 6.49 -2.39 -0.02 2.05 16 29 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.23 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.19 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.11 4.10 7.33 -2.91 -0.02 4.08 16 Total: -1.00 -84.24 295.50 5.26 -78.98 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.13 Total: 12.02 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.69 Total: 5.10 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -2.53 Total: -101.67 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.07 Total: -39.03 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -84.24 5.26 -78.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528404854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.414 kcal (2) G-P(sol) polarization free energy of solvation -84.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds