Wall clock time and date at job start Mon Mar 30 2020 00:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47068 * 2 1 4 4 C 1.36631 * 120.00131 * 264.50384 * 3 2 1 5 5 H 1.08007 * 119.99849 * 132.07547 * 4 3 2 6 6 C 1.39203 * 120.00174 * 312.08513 * 4 3 2 7 7 N 1.31263 * 120.00107 * 3.50780 * 6 4 3 8 8 Si 1.86799 * 120.00009 * 183.50472 * 6 4 3 9 9 H 1.48495 * 109.47518 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46900 * 119.99854 * 8 6 4 11 11 H 1.48495 * 109.47291 * 239.99921 * 8 6 4 12 12 C 1.34778 * 119.99869 * 84.50722 * 3 2 1 13 13 O 1.21612 * 120.00303 * 4.47363 * 12 3 2 14 14 C 1.47656 * 119.99817 * 184.19748 * 12 3 2 15 15 N 1.32255 * 120.04544 * 354.63903 * 14 12 3 16 16 C 1.31985 * 122.75399 * 179.74672 * 15 14 12 17 17 C 1.37776 * 121.73698 * 0.53203 * 16 15 14 18 18 C 1.40428 * 118.75519 * 359.74690 * 17 16 15 19 19 C 1.40619 * 122.27548 * 180.02562 * 18 17 16 20 20 C 1.36666 * 117.95575 * 179.97438 * 19 18 17 21 21 C 1.39367 * 119.91477 * 359.97438 * 20 19 18 22 22 N 1.31229 * 121.84902 * 0.02562 * 21 20 19 23 23 C 1.33220 * 121.22588 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.46687 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47368 * 300.00234 * 1 2 3 26 26 H 1.08996 * 109.46867 * 60.00743 * 1 2 3 27 27 H 1.08994 * 109.47680 * 240.00001 * 2 1 3 28 28 H 1.09010 * 109.47039 * 119.99444 * 2 1 3 29 29 H 0.96998 * 119.99944 * 180.02562 * 7 6 4 30 30 H 1.07999 * 119.13537 * 180.27839 * 16 15 14 31 31 H 1.08001 * 120.62125 * 179.71938 * 17 16 15 32 32 H 1.08001 * 121.02137 * 359.95446 * 19 18 17 33 33 H 1.08003 * 120.04156 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.07446 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3529 1.9876 -1.1778 5 1 1.9862 2.9794 -1.3978 6 6 3.1662 1.3270 -2.0943 7 7 3.5553 0.0958 -1.8584 8 14 3.7038 2.1928 -3.6598 9 1 3.1349 3.5641 -3.6875 10 1 5.1863 2.2716 -3.6977 11 1 3.2183 1.4311 -4.8384 12 6 2.1376 2.0538 1.1619 13 8 1.9180 1.4895 2.2165 14 6 2.5408 3.4742 1.1546 15 7 2.8875 4.0584 0.0198 16 6 3.2519 5.3250 -0.0491 17 6 3.3051 6.1258 1.0709 18 6 2.9559 5.5731 2.3137 19 6 2.9833 6.3227 3.5031 20 6 2.6253 5.6961 4.6637 21 6 2.2481 4.3546 4.6415 22 7 2.2245 3.6602 3.5282 23 6 2.5627 4.2111 2.3634 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1223 -0.3644 -2.4969 30 1 3.5192 5.7439 -1.0079 31 1 3.6102 7.1590 0.9944 32 1 3.2785 7.3616 3.4997 33 1 2.6347 6.2397 5.5969 34 1 1.9682 3.8727 5.5667 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528405545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:24 Heat of formation + Delta-G solvation = 59.760100 kcal Electronic energy + Delta-G solvation = -20597.015639 eV Core-core repulsion = 17496.215876 eV Total energy + Delta-G solvation = -3100.799763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74462 -38.40892 -37.24222 -34.84277 -33.23214 -31.73425 -31.11791 -30.35270 -29.16936 -25.19719 -24.53622 -23.65493 -23.24255 -21.42298 -19.41588 -18.34291 -17.54410 -17.01188 -16.06272 -15.55437 -14.86359 -14.44062 -14.38332 -14.11690 -13.87193 -13.50906 -13.26178 -12.85308 -12.57421 -12.47165 -12.09738 -11.88373 -11.60041 -11.49795 -11.13274 -10.76034 -10.65619 -10.33734 -10.24402 -9.81327 -9.33914 -9.08524 -8.96637 -8.67478 -8.17713 -7.96488 -7.26332 -6.27250 -3.95588 0.43130 1.09856 2.09384 3.16305 3.25025 3.30456 3.34885 4.04038 4.14562 4.41916 4.61862 4.80741 4.83914 4.88993 5.05238 5.06238 5.14652 5.32937 5.44197 5.71152 5.85922 5.97971 6.08822 6.24602 6.33159 6.40426 6.48337 6.54314 6.75082 6.91465 6.99709 7.16945 7.46469 7.70617 8.10873 8.25186 8.49661 8.62682 9.13740 9.55119 10.00079 10.70329 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.007463 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.346430 B = 3750.760912 C = 4855.266082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 N -0.411 5.411 4 C -0.282 4.282 5 H 0.114 0.886 6 C 0.036 3.964 7 N -0.868 5.868 8 Si 0.924 3.076 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.502 3.498 13 O -0.567 6.567 14 C 0.170 3.830 15 N -0.411 5.411 16 C 0.079 3.921 17 C -0.170 4.170 18 C -0.080 4.080 19 C -0.076 4.076 20 C -0.162 4.162 21 C 0.105 3.895 22 N -0.406 5.406 23 C 0.096 3.904 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.053 0.947 29 H 0.269 0.731 30 H 0.154 0.846 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 11.025 5.096 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 N -0.129 5.129 4 C -0.412 4.412 5 H 0.131 0.869 6 C -0.169 4.169 7 N -0.506 5.506 8 Si 0.750 3.250 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.290 3.710 13 O -0.450 6.450 14 C 0.018 3.982 15 N -0.124 5.124 16 C -0.067 4.067 17 C -0.192 4.192 18 C -0.086 4.086 19 C -0.103 4.103 20 C -0.184 4.184 21 C -0.069 4.069 22 N -0.113 5.113 23 C -0.030 4.030 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.171 0.829 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.022 9.209 4.572 10.332 hybrid contribution 0.800 1.965 -0.074 2.123 sum -0.222 11.174 4.498 12.048 Atomic orbital electron populations 1.22082 0.98327 1.00161 1.01021 1.21627 0.91454 0.84739 1.04237 1.43533 1.52541 1.11649 1.05130 1.20152 1.25942 1.01806 0.93349 0.86882 1.25660 0.95636 0.95529 1.00032 1.69668 1.33592 1.10747 1.36545 0.85904 0.78537 0.79931 0.80582 1.18753 1.20774 1.20978 1.17854 0.83614 0.84871 0.84666 1.90710 1.55829 1.67941 1.30520 1.21894 0.94500 0.95600 0.86194 1.68682 1.07718 1.09495 1.26484 1.22931 0.95205 0.90309 0.98288 1.22138 1.03697 1.01069 0.92303 1.18909 1.00013 0.94558 0.95167 1.21276 0.97835 0.99652 0.91502 1.21971 1.00662 0.96738 0.98987 1.23168 0.95681 0.91018 0.97033 1.68307 1.09681 1.36118 0.97227 1.19702 0.99013 0.90709 0.93602 0.93285 0.93717 0.93117 0.86509 0.92801 0.92009 0.82908 0.85007 0.84621 0.84840 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 10.20 37.16 0.38 -2.97 16 2 C 0.10 2.54 5.60 -4.04 -0.02 2.51 16 3 N -0.41 -10.90 2.51 -115.97 -0.29 -11.19 16 4 C -0.28 -7.34 7.46 -15.06 -0.11 -7.45 16 5 H 0.11 2.89 6.00 -52.48 -0.32 2.58 16 6 C 0.04 0.93 5.35 -17.44 -0.09 0.84 16 7 N -0.87 -23.18 10.97 55.51 0.61 -22.57 16 8 Si 0.92 19.93 29.56 -169.99 -5.02 14.91 16 9 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.50 13.43 7.57 -12.41 -0.09 13.34 16 13 O -0.57 -16.05 14.87 5.27 0.08 -15.98 16 14 C 0.17 4.06 6.72 -82.56 -0.55 3.50 16 15 N -0.41 -9.08 6.33 -9.57 -0.06 -9.14 16 16 C 0.08 1.37 11.12 -17.65 -0.20 1.17 16 17 C -0.17 -2.56 9.93 -38.93 -0.39 -2.95 16 18 C -0.08 -1.35 5.75 -106.79 -0.61 -1.96 16 19 C -0.08 -1.00 9.94 -39.25 -0.39 -1.39 16 20 C -0.16 -2.00 10.03 -39.73 -0.40 -2.40 16 21 C 0.10 1.62 11.14 -17.39 -0.19 1.43 16 22 N -0.41 -8.54 8.50 -10.74 -0.09 -8.63 16 23 C 0.10 2.04 6.61 -84.61 -0.56 1.48 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.12 3.02 5.49 -51.93 -0.29 2.74 16 28 H 0.05 1.38 7.53 -51.92 -0.39 0.99 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -32.24 293.54 -7.10 -39.34 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.51 Total: 3.69 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -3.24 Total: 5.15 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.17 Total: -51.53 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.08 Total: -15.98 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.24 -7.10 -39.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528405545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.104 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds