Wall clock time and date at job start Mon Mar 30 2020 00:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47068 * 2 1 4 4 C 1.36631 * 120.00131 * 264.50384 * 3 2 1 5 5 H 1.08007 * 119.99849 * 132.07547 * 4 3 2 6 6 C 1.39203 * 120.00174 * 312.08513 * 4 3 2 7 7 N 1.31263 * 120.00107 * 3.50780 * 6 4 3 8 8 Si 1.86799 * 120.00009 * 183.50472 * 6 4 3 9 9 H 1.48495 * 109.47518 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46900 * 119.99854 * 8 6 4 11 11 H 1.48495 * 109.47291 * 239.99921 * 8 6 4 12 12 C 1.34778 * 119.99869 * 84.50722 * 3 2 1 13 13 O 1.21612 * 120.00303 * 4.47363 * 12 3 2 14 14 C 1.47656 * 119.99817 * 184.19748 * 12 3 2 15 15 N 1.32255 * 120.04544 * 354.63903 * 14 12 3 16 16 C 1.31985 * 122.75399 * 179.74672 * 15 14 12 17 17 C 1.37776 * 121.73698 * 0.53203 * 16 15 14 18 18 C 1.40428 * 118.75519 * 359.74690 * 17 16 15 19 19 C 1.40619 * 122.27548 * 180.02562 * 18 17 16 20 20 C 1.36666 * 117.95575 * 179.97438 * 19 18 17 21 21 C 1.39367 * 119.91477 * 359.97438 * 20 19 18 22 22 N 1.31229 * 121.84902 * 0.02562 * 21 20 19 23 23 C 1.33220 * 121.22588 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.46687 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47368 * 300.00234 * 1 2 3 26 26 H 1.08996 * 109.46867 * 60.00743 * 1 2 3 27 27 H 1.08994 * 109.47680 * 240.00001 * 2 1 3 28 28 H 1.09010 * 109.47039 * 119.99444 * 2 1 3 29 29 H 0.96998 * 119.99944 * 180.02562 * 7 6 4 30 30 H 1.07999 * 119.13537 * 180.27839 * 16 15 14 31 31 H 1.08001 * 120.62125 * 179.71938 * 17 16 15 32 32 H 1.08001 * 121.02137 * 359.95446 * 19 18 17 33 33 H 1.08003 * 120.04156 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.07446 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3529 1.9876 -1.1778 5 1 1.9862 2.9794 -1.3978 6 6 3.1662 1.3270 -2.0943 7 7 3.5553 0.0958 -1.8584 8 14 3.7038 2.1928 -3.6598 9 1 3.1349 3.5641 -3.6875 10 1 5.1863 2.2716 -3.6977 11 1 3.2183 1.4311 -4.8384 12 6 2.1376 2.0538 1.1619 13 8 1.9180 1.4895 2.2165 14 6 2.5408 3.4742 1.1546 15 7 2.8875 4.0584 0.0198 16 6 3.2519 5.3250 -0.0491 17 6 3.3051 6.1258 1.0709 18 6 2.9559 5.5731 2.3137 19 6 2.9833 6.3227 3.5031 20 6 2.6253 5.6961 4.6637 21 6 2.2481 4.3546 4.6415 22 7 2.2245 3.6602 3.5282 23 6 2.5627 4.2111 2.3634 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1223 -0.3644 -2.4969 30 1 3.5192 5.7439 -1.0079 31 1 3.6102 7.1590 0.9944 32 1 3.2785 7.3616 3.4997 33 1 2.6347 6.2397 5.5969 34 1 1.9682 3.8727 5.5667 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528405545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:24 Heat of formation + Delta-G solvation = 38.238943 kcal Electronic energy + Delta-G solvation = -20597.948866 eV Core-core repulsion = 17496.215876 eV Total energy + Delta-G solvation = -3101.732990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.11531 -40.18643 -38.70366 -36.78227 -34.56472 -33.63587 -32.43316 -31.93854 -30.76536 -26.93438 -26.15556 -24.97864 -24.72237 -23.05526 -21.19683 -19.83968 -19.08788 -18.36149 -17.51556 -17.24416 -16.62256 -16.09238 -16.00627 -15.48018 -15.24425 -15.09654 -14.86978 -14.36004 -14.10731 -13.89660 -13.59917 -13.46156 -13.34636 -13.00756 -12.87815 -12.55915 -12.41741 -11.94314 -11.73880 -11.64259 -11.03061 -10.76595 -10.35350 -10.21742 -9.84297 -9.36913 -9.14219 -8.15020 -5.95593 -0.86930 -0.15543 0.82886 1.47243 1.48375 1.63865 1.94001 2.35803 2.47131 2.78778 3.13592 3.30142 3.37891 3.63956 3.65547 3.82982 3.94432 4.04240 4.36567 4.40378 4.55093 4.60664 4.64577 4.71410 4.78749 4.85003 5.04209 5.07207 5.20318 5.25021 5.48918 5.53322 5.73398 5.81307 6.18241 6.63645 6.94700 7.12318 7.25700 7.63439 8.06555 8.84862 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.007463 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.346430 B = 3750.760912 C = 4855.266082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.102 3.898 3 N -0.431 5.431 4 C -0.299 4.299 5 H 0.113 0.887 6 C -0.010 4.010 7 N -0.912 5.912 8 Si 0.988 3.012 9 H -0.248 1.248 10 H -0.285 1.285 11 H -0.280 1.280 12 C 0.491 3.509 13 O -0.600 6.600 14 C 0.115 3.885 15 N -0.428 5.428 16 C 0.042 3.958 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.054 4.054 20 C -0.153 4.153 21 C 0.113 3.887 22 N -0.482 5.482 23 C 0.073 3.927 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.105 0.895 28 H 0.029 0.971 29 H 0.268 0.732 30 H 0.186 0.814 31 H 0.193 0.807 32 H 0.192 0.808 33 H 0.188 0.812 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 16.105 6.265 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 N -0.148 5.148 4 C -0.428 4.428 5 H 0.130 0.870 6 C -0.210 4.210 7 N -0.552 5.552 8 Si 0.812 3.188 9 H -0.171 1.171 10 H -0.212 1.212 11 H -0.206 1.206 12 C 0.280 3.720 13 O -0.485 6.485 14 C -0.035 4.035 15 N -0.141 5.141 16 C -0.105 4.105 17 C -0.134 4.134 18 C -0.111 4.111 19 C -0.080 4.080 20 C -0.173 4.173 21 C -0.061 4.061 22 N -0.190 5.190 23 C -0.051 4.051 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.203 0.797 31 H 0.210 0.790 32 H 0.209 0.791 33 H 0.206 0.794 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.419 14.305 5.724 15.413 hybrid contribution 0.623 0.720 -0.041 0.953 sum 0.204 15.025 5.682 16.065 Atomic orbital electron populations 1.21931 0.95777 1.01937 1.00320 1.21558 0.93583 0.84691 1.02256 1.43693 1.53749 1.11896 1.05512 1.20207 1.27217 1.01905 0.93501 0.87011 1.26464 0.95395 0.96030 1.03062 1.69798 1.35200 1.12205 1.37957 0.84939 0.77582 0.79543 0.76771 1.17120 1.21161 1.20557 1.18536 0.82538 0.86698 0.84198 1.90627 1.56885 1.69377 1.31571 1.21440 0.99013 0.94664 0.88416 1.68362 1.06960 1.12169 1.26582 1.23489 0.97102 0.89017 1.00927 1.22803 0.97376 1.02822 0.90356 1.19343 1.00726 0.93166 0.97877 1.21923 0.95012 1.01515 0.89554 1.22479 0.98432 0.95133 1.01262 1.23882 0.93049 0.92833 0.96319 1.68216 1.13298 1.38824 0.98691 1.19745 0.99844 0.92659 0.92844 0.90230 0.95044 0.92896 0.87724 0.95259 0.92210 0.79739 0.78997 0.79085 0.79433 0.80301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.37 10.20 71.98 0.73 -5.63 16 2 C 0.10 5.49 5.60 86.38 0.48 5.97 16 3 N -0.43 -24.55 2.51 -639.06 -1.60 -26.15 16 4 C -0.30 -16.42 7.46 84.18 0.63 -15.80 16 5 H 0.11 5.99 6.00 -2.91 -0.02 5.97 16 6 C -0.01 -0.52 5.35 85.01 0.45 -0.06 16 7 N -0.91 -51.74 10.97 21.70 0.24 -51.50 16 8 Si 0.99 41.99 29.56 68.60 2.03 44.02 16 9 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 10 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 12 C 0.49 28.30 7.57 86.73 0.66 28.96 16 13 O -0.60 -36.71 14.87 -4.07 -0.06 -36.77 16 14 C 0.12 5.75 6.72 42.39 0.28 6.03 16 15 N -0.43 -19.24 6.33 -184.19 -1.17 -20.40 16 16 C 0.04 1.34 11.12 84.56 0.94 2.28 16 17 C -0.11 -2.82 9.93 22.69 0.23 -2.60 16 18 C -0.10 -3.13 5.75 -21.27 -0.12 -3.25 16 19 C -0.05 -1.06 9.94 22.48 0.22 -0.83 16 20 C -0.15 -2.87 10.03 22.17 0.22 -2.65 16 21 C 0.11 3.23 11.14 85.05 0.95 4.18 16 22 N -0.48 -20.52 8.50 -187.88 -1.60 -22.12 16 23 C 0.07 3.13 6.61 40.65 0.27 3.40 16 24 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 25 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.11 5.87 5.49 -2.39 -0.01 5.85 16 28 H 0.03 1.65 7.53 -2.38 -0.02 1.63 16 29 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.19 4.57 8.06 -2.91 -0.02 4.54 16 31 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -81.31 293.54 4.92 -76.40 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.13 Total: 16.52 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 5.95 Total: 20.00 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -4.13 Total: -120.17 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.06 Total: -36.77 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -81.31 4.92 -76.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528405545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.636 kcal (2) G-P(sol) polarization free energy of solvation -81.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds