Wall clock time and date at job start Mon Mar 30 2020 00:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47182 * 2 1 4 4 C 1.36610 * 119.99499 * 263.22461 * 3 2 1 5 5 H 1.08004 * 119.99497 * 144.74510 * 4 3 2 6 6 C 1.39232 * 120.00150 * 324.74343 * 4 3 2 7 7 N 1.31242 * 119.99679 * 159.98556 * 6 4 3 8 8 Si 1.86801 * 120.00105 * 339.98431 * 6 4 3 9 9 H 1.48500 * 109.46766 * 91.62893 * 8 6 4 10 10 H 1.48500 * 109.46892 * 211.62921 * 8 6 4 11 11 H 1.48490 * 109.46982 * 331.63177 * 8 6 4 12 12 C 1.34772 * 120.00213 * 83.22639 * 3 2 1 13 13 O 1.21608 * 120.00213 * 175.36132 * 12 3 2 14 14 C 1.47752 * 120.00055 * 355.36133 * 12 3 2 15 15 C 1.39079 * 121.18262 * 56.68988 * 14 12 3 16 16 C 1.39220 * 119.65862 * 179.97438 * 15 14 12 17 17 N 1.31162 * 121.92522 * 0.02929 * 16 15 14 18 18 C 1.33304 * 121.64946 * 359.97438 * 17 16 15 19 19 C 1.40820 * 121.90979 * 179.97438 * 18 17 16 20 20 C 1.36189 * 118.76679 * 180.02562 * 19 18 17 21 21 N 1.32529 * 121.94259 * 0.02562 * 20 19 18 22 22 C 1.31369 * 122.60159 * 359.97438 * 21 20 19 23 23 C 1.40014 * 119.88496 * 359.75130 * 22 21 20 24 24 H 1.08991 * 109.47319 * 55.09692 * 1 2 3 25 25 H 1.09005 * 109.46734 * 175.09924 * 1 2 3 26 26 H 1.09000 * 109.46773 * 295.09421 * 1 2 3 27 27 H 1.09004 * 109.47274 * 120.00058 * 2 1 3 28 28 H 1.09004 * 109.47340 * 239.99611 * 2 1 3 29 29 H 0.97001 * 119.99851 * 180.02562 * 7 6 4 30 30 H 1.07999 * 120.17017 * 359.96044 * 15 14 12 31 31 H 1.08008 * 119.03481 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.61976 * 359.97438 * 19 18 17 33 33 H 1.07998 * 119.02575 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.06450 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3776 1.9786 -1.1749 5 1 2.1922 3.0321 -1.3237 6 6 2.9828 1.2293 -2.1803 7 7 2.9745 1.6646 -3.4184 8 14 3.8065 -0.3956 -1.7670 9 1 2.8271 -1.5008 -1.9233 10 1 4.9531 -0.6167 -2.6844 11 1 4.2940 -0.3608 -0.3648 12 6 2.1132 2.0624 1.1590 13 8 2.5971 3.1780 1.1707 14 6 1.6292 1.4539 2.4154 15 6 2.1169 0.2284 2.8565 16 6 1.6389 -0.3157 4.0455 17 7 0.7335 0.2941 4.7727 18 6 0.2221 1.4708 4.4108 19 6 -0.7505 2.1300 5.1870 20 6 -1.2297 3.3299 4.7565 21 7 -0.8080 3.8908 3.6323 22 6 0.0961 3.3336 2.8590 23 6 0.6558 2.1009 3.2165 24 1 -0.3633 0.5880 -0.8427 25 1 -0.3633 -1.0240 -0.0878 26 1 -0.3633 0.4359 0.9307 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.3959 1.1425 -4.1189 30 1 2.8624 -0.2986 2.2795 31 1 2.0249 -1.2678 4.3788 32 1 -1.1103 1.6919 6.1062 33 1 -1.9760 3.8390 5.3484 34 1 0.4104 3.8274 1.9514 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626568313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:29 Heat of formation + Delta-G solvation = 55.787846 kcal Electronic energy + Delta-G solvation = -20695.960481 eV Core-core repulsion = 17594.988469 eV Total energy + Delta-G solvation = -3100.972012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20432 -39.00179 -37.77855 -35.48804 -33.47556 -32.35706 -31.46962 -30.39320 -29.95072 -26.14843 -24.60751 -24.18545 -23.15380 -22.67813 -19.75168 -18.54544 -17.48820 -17.14153 -16.83973 -16.09039 -15.68818 -14.92853 -14.69933 -14.56307 -14.18479 -13.85112 -13.70246 -13.57685 -12.99020 -12.78408 -12.67282 -12.50492 -12.12618 -11.91411 -11.67455 -11.21979 -10.88683 -10.46170 -10.21464 -9.98557 -9.93429 -9.48465 -9.26618 -9.24219 -8.76295 -8.38232 -8.01978 -6.59969 -4.14608 0.17369 0.74766 1.79011 2.85490 2.99573 3.07215 3.09683 3.43783 3.91685 4.00028 4.15014 4.16175 4.48484 4.60894 4.69442 4.81654 4.84500 5.02360 5.18640 5.33981 5.41008 5.56419 5.64671 5.71578 5.78927 5.83607 5.92794 6.10406 6.11289 6.23240 6.43501 6.59203 6.67161 7.30043 7.77747 7.99232 8.02395 8.25569 8.69891 9.06588 9.47801 10.50779 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.006630 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.143656 B = 4222.378252 C = 4722.911027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.065 3.935 3 N -0.437 5.437 4 C -0.317 4.317 5 H 0.112 0.888 6 C 0.063 3.937 7 N -0.849 5.849 8 Si 0.880 3.120 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.262 1.262 12 C 0.481 3.519 13 O -0.551 6.551 14 C 0.004 3.996 15 C -0.175 4.175 16 C 0.156 3.844 17 N -0.484 5.484 18 C 0.159 3.841 19 C -0.155 4.155 20 C 0.092 3.908 21 N -0.494 5.494 22 C 0.182 3.818 23 C -0.144 4.144 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.278 0.722 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 -6.723 11.980 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.057 4.057 3 N -0.156 5.156 4 C -0.445 4.445 5 H 0.129 0.871 6 C -0.145 4.145 7 N -0.484 5.484 8 Si 0.708 3.292 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.187 1.187 12 C 0.270 3.730 13 O -0.433 6.433 14 C -0.010 4.010 15 C -0.195 4.195 16 C -0.017 4.017 17 N -0.193 5.193 18 C 0.032 3.968 19 C -0.176 4.176 20 C -0.053 4.053 21 N -0.203 5.203 22 C 0.010 3.990 23 C -0.149 4.149 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.183 0.817 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.774 -5.664 12.425 14.825 hybrid contribution 1.191 -1.510 -0.502 1.988 sum -4.583 -7.174 11.923 14.650 Atomic orbital electron populations 1.22087 0.95823 1.01568 1.02400 1.22276 0.95321 0.85722 1.02425 1.43605 1.54674 1.11398 1.05899 1.19111 1.39133 0.97786 0.88425 0.87050 1.25415 0.95837 0.98603 0.94686 1.69639 1.39731 1.39417 0.99650 0.86969 0.79554 0.83036 0.79682 1.19818 1.21084 1.18662 1.17823 0.85038 0.88004 0.82181 1.90725 1.48023 1.19549 1.85019 1.20895 0.91853 0.92811 0.95457 1.22461 1.02650 0.95834 0.98599 1.23006 0.90603 0.98488 0.89581 1.67857 1.10983 1.08244 1.32220 1.18858 0.95043 0.91212 0.91672 1.21641 0.97949 0.96655 1.01327 1.22309 0.97735 0.92457 0.92765 1.67645 1.12455 1.34905 1.05248 1.23471 0.88302 0.89689 0.97526 1.19691 0.99652 0.98478 0.97057 0.91125 0.92341 0.93421 0.91142 0.90135 0.91111 0.83539 0.81729 0.83888 0.82530 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.11 37.16 0.38 -2.31 16 2 C 0.07 1.24 4.38 -4.04 -0.02 1.22 16 3 N -0.44 -10.01 2.24 -115.93 -0.26 -10.27 16 4 C -0.32 -8.47 9.40 -15.05 -0.14 -8.62 16 5 H 0.11 3.34 7.91 -52.48 -0.41 2.92 16 6 C 0.06 1.63 5.33 -17.43 -0.09 1.54 16 7 N -0.85 -23.20 13.95 55.51 0.77 -22.43 16 8 Si 0.88 19.12 24.92 -169.99 -4.24 14.89 16 9 H -0.27 -5.41 6.53 56.52 0.37 -5.04 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 12 C 0.48 10.85 6.37 -12.37 -0.08 10.77 16 13 O -0.55 -14.34 15.94 5.27 0.08 -14.25 16 14 C 0.00 0.07 4.25 -104.37 -0.44 -0.37 16 15 C -0.17 -2.62 7.96 -38.91 -0.31 -2.93 16 16 C 0.16 2.00 11.14 -17.47 -0.19 1.81 16 17 N -0.48 -7.16 10.33 -10.97 -0.11 -7.27 16 18 C 0.16 2.52 6.63 -84.88 -0.56 1.96 16 19 C -0.16 -2.07 10.08 -39.34 -0.40 -2.47 16 20 C 0.09 1.22 11.06 -17.99 -0.20 1.02 16 21 N -0.49 -8.13 10.31 -13.25 -0.14 -8.26 16 22 C 0.18 3.27 10.56 -17.08 -0.18 3.09 16 23 C -0.14 -2.55 5.77 -106.53 -0.61 -3.16 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.78 7.32 -51.93 -0.38 0.40 16 27 H 0.07 1.14 4.37 -51.93 -0.23 0.92 16 28 H 0.08 1.61 3.03 -51.93 -0.16 1.45 16 29 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.15 1.99 6.79 -52.49 -0.36 1.64 16 31 H 0.17 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.17 3.34 6.70 -52.49 -0.35 2.99 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -30.77 286.32 -5.60 -36.37 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.17 Total: 5.37 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.86 Total: 1.54 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.26 Total: -48.23 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.24 Total: 14.89 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.77 -5.60 -36.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626568313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.154 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds