Wall clock time and date at job start Mon Mar 30 2020 00:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47182 * 2 1 4 4 C 1.36610 * 119.99499 * 263.22461 * 3 2 1 5 5 H 1.08004 * 119.99497 * 144.74510 * 4 3 2 6 6 C 1.39232 * 120.00150 * 324.74343 * 4 3 2 7 7 N 1.31242 * 119.99679 * 159.98556 * 6 4 3 8 8 Si 1.86801 * 120.00105 * 339.98431 * 6 4 3 9 9 H 1.48500 * 109.46766 * 91.62893 * 8 6 4 10 10 H 1.48500 * 109.46892 * 211.62921 * 8 6 4 11 11 H 1.48490 * 109.46982 * 331.63177 * 8 6 4 12 12 C 1.34772 * 120.00213 * 83.22639 * 3 2 1 13 13 O 1.21608 * 120.00213 * 175.36132 * 12 3 2 14 14 C 1.47752 * 120.00055 * 355.36133 * 12 3 2 15 15 C 1.39079 * 121.18262 * 56.68988 * 14 12 3 16 16 C 1.39220 * 119.65862 * 179.97438 * 15 14 12 17 17 N 1.31162 * 121.92522 * 0.02929 * 16 15 14 18 18 C 1.33304 * 121.64946 * 359.97438 * 17 16 15 19 19 C 1.40820 * 121.90979 * 179.97438 * 18 17 16 20 20 C 1.36189 * 118.76679 * 180.02562 * 19 18 17 21 21 N 1.32529 * 121.94259 * 0.02562 * 20 19 18 22 22 C 1.31369 * 122.60159 * 359.97438 * 21 20 19 23 23 C 1.40014 * 119.88496 * 359.75130 * 22 21 20 24 24 H 1.08991 * 109.47319 * 55.09692 * 1 2 3 25 25 H 1.09005 * 109.46734 * 175.09924 * 1 2 3 26 26 H 1.09000 * 109.46773 * 295.09421 * 1 2 3 27 27 H 1.09004 * 109.47274 * 120.00058 * 2 1 3 28 28 H 1.09004 * 109.47340 * 239.99611 * 2 1 3 29 29 H 0.97001 * 119.99851 * 180.02562 * 7 6 4 30 30 H 1.07999 * 120.17017 * 359.96044 * 15 14 12 31 31 H 1.08008 * 119.03481 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.61976 * 359.97438 * 19 18 17 33 33 H 1.07998 * 119.02575 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.06450 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3776 1.9786 -1.1749 5 1 2.1922 3.0321 -1.3237 6 6 2.9828 1.2293 -2.1803 7 7 2.9745 1.6646 -3.4184 8 14 3.8065 -0.3956 -1.7670 9 1 2.8271 -1.5008 -1.9233 10 1 4.9531 -0.6167 -2.6844 11 1 4.2940 -0.3608 -0.3648 12 6 2.1132 2.0624 1.1590 13 8 2.5971 3.1780 1.1707 14 6 1.6292 1.4539 2.4154 15 6 2.1169 0.2284 2.8565 16 6 1.6389 -0.3157 4.0455 17 7 0.7335 0.2941 4.7727 18 6 0.2221 1.4708 4.4108 19 6 -0.7505 2.1300 5.1870 20 6 -1.2297 3.3299 4.7565 21 7 -0.8080 3.8908 3.6323 22 6 0.0961 3.3336 2.8590 23 6 0.6558 2.1009 3.2165 24 1 -0.3633 0.5880 -0.8427 25 1 -0.3633 -1.0240 -0.0878 26 1 -0.3633 0.4359 0.9307 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.3959 1.1425 -4.1189 30 1 2.8624 -0.2986 2.2795 31 1 2.0249 -1.2678 4.3788 32 1 -1.1103 1.6919 6.1062 33 1 -1.9760 3.8390 5.3484 34 1 0.4104 3.8274 1.9514 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626568313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:29 Heat of formation + Delta-G solvation = 33.601884 kcal Electronic energy + Delta-G solvation = -20696.922537 eV Core-core repulsion = 17594.988469 eV Total energy + Delta-G solvation = -3101.934068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.45848 -40.62602 -38.99432 -37.28222 -34.92037 -34.13291 -32.64872 -31.64269 -31.47868 -27.83541 -26.02662 -25.38042 -24.60945 -24.10780 -21.25824 -19.78836 -19.12846 -18.64452 -18.20181 -17.83728 -17.14639 -16.19694 -16.01443 -15.82738 -15.60666 -15.33774 -15.14558 -14.99640 -14.49156 -14.34702 -14.20312 -13.88586 -13.62142 -13.18278 -13.03209 -12.78089 -12.62691 -12.05457 -11.67334 -11.64522 -11.32203 -11.03558 -10.74607 -10.42755 -10.34878 -9.93984 -9.52455 -8.58558 -6.21713 -1.05623 -0.39892 0.53079 1.15973 1.29244 1.42835 1.69337 1.93409 2.12166 2.38630 2.84454 2.95176 3.11766 3.29523 3.36699 3.53348 3.62765 3.68697 3.89721 4.14018 4.23947 4.27145 4.34753 4.41932 4.58024 4.66470 4.76884 4.80667 4.83112 4.92677 5.21179 5.29083 5.43306 5.55289 5.93545 6.38429 6.64133 6.76610 6.80960 7.11704 7.63574 8.57471 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.006630 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.143656 B = 4222.378252 C = 4722.911027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 N -0.447 5.447 4 C -0.340 4.340 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.230 1.230 10 H -0.286 1.286 11 H -0.248 1.248 12 C 0.485 3.515 13 O -0.603 6.603 14 C -0.029 4.029 15 C -0.155 4.155 16 C 0.171 3.829 17 N -0.479 5.479 18 C 0.145 3.855 19 C -0.136 4.136 20 C 0.085 3.915 21 N -0.505 5.505 22 C 0.150 3.850 23 C -0.154 4.154 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.284 0.716 30 H 0.167 0.833 31 H 0.221 0.779 32 H 0.181 0.819 33 H 0.199 0.801 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 -11.146 15.559 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.061 4.061 3 N -0.166 5.166 4 C -0.468 4.468 5 H 0.066 0.934 6 C -0.189 4.189 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.155 1.155 10 H -0.213 1.213 11 H -0.172 1.172 12 C 0.275 3.725 13 O -0.488 6.488 14 C -0.043 4.043 15 C -0.176 4.176 16 C -0.002 4.002 17 N -0.187 5.187 18 C 0.019 3.981 19 C -0.156 4.156 20 C -0.059 4.059 21 N -0.214 5.214 22 C -0.021 4.021 23 C -0.159 4.159 24 H 0.061 0.939 25 H 0.117 0.883 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.185 0.815 31 H 0.238 0.762 32 H 0.198 0.802 33 H 0.216 0.784 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.338 -10.093 16.004 19.954 hybrid contribution 1.273 -0.041 -1.478 1.951 sum -5.065 -10.134 14.526 18.422 Atomic orbital electron populations 1.22029 0.94375 1.03512 1.01252 1.22530 0.96649 0.83193 1.03733 1.43664 1.55145 1.13100 1.04662 1.18660 1.41488 0.95860 0.90813 0.93375 1.26280 0.95508 1.03322 0.93826 1.69761 1.40941 1.41903 1.00959 0.85910 0.78746 0.78546 0.79864 1.15515 1.21314 1.17193 1.18516 0.83303 0.87087 0.83592 1.90673 1.49899 1.21966 1.86300 1.20464 0.94603 0.95121 0.94068 1.22808 1.01641 0.93849 0.99271 1.23816 0.88963 0.99606 0.87833 1.67995 1.11152 1.07437 1.32141 1.19173 0.95895 0.91901 0.91156 1.22073 0.96013 0.95876 1.01627 1.22975 0.98205 0.92948 0.91798 1.67581 1.11918 1.35577 1.06320 1.23010 0.90522 0.90905 0.97681 1.19688 0.99896 0.98273 0.98035 0.93856 0.88320 0.93429 0.87514 0.90694 0.90584 0.81532 0.76230 0.80183 0.78419 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.11 71.98 0.73 -4.19 16 2 C 0.06 2.17 4.38 86.38 0.38 2.55 16 3 N -0.45 -21.20 2.24 -638.95 -1.43 -22.63 16 4 C -0.34 -19.57 9.40 84.19 0.79 -18.78 16 5 H 0.05 3.27 7.91 -2.91 -0.02 3.24 16 6 C 0.01 0.79 5.33 85.02 0.45 1.24 16 7 N -0.90 -51.84 13.95 21.71 0.30 -51.53 16 8 Si 0.95 38.64 24.92 68.60 1.71 40.35 16 9 H -0.23 -7.93 6.53 99.48 0.65 -7.28 16 10 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 12 C 0.49 22.95 6.37 86.76 0.55 23.50 16 13 O -0.60 -34.20 15.94 -4.06 -0.06 -34.26 16 14 C -0.03 -1.05 4.25 -19.70 -0.08 -1.14 16 15 C -0.16 -4.05 7.96 22.71 0.18 -3.87 16 16 C 0.17 3.41 11.14 85.03 0.95 4.36 16 17 N -0.48 -11.78 10.33 -188.61 -1.95 -13.73 16 18 C 0.14 4.15 6.63 40.44 0.27 4.42 16 19 C -0.14 -3.12 10.08 22.42 0.23 -2.89 16 20 C 0.09 2.06 11.06 84.11 0.93 2.99 16 21 N -0.51 -16.81 10.31 -195.83 -2.02 -18.83 16 22 C 0.15 5.71 10.56 85.19 0.90 6.61 16 23 C -0.15 -5.42 5.77 -21.10 -0.12 -5.54 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 26 H 0.05 1.51 7.32 -2.39 -0.02 1.49 16 27 H 0.11 3.01 4.37 -2.39 -0.01 3.00 16 28 H 0.08 2.78 3.03 -2.38 -0.01 2.77 16 29 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.17 3.66 6.79 -2.91 -0.02 3.64 16 31 H 0.22 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.20 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.14 6.06 6.70 -2.91 -0.02 6.04 16 Total: -1.00 -76.32 286.32 3.78 -72.53 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 1.09 Total: 18.82 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.15 Total: 9.28 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -5.10 Total: -106.72 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.06 Total: -34.26 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.71 Total: 40.35 kcal Total: -76.32 3.78 -72.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626568313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.135 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds