Wall clock time and date at job start Mon Mar 30 2020 01:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99869 * 2 1 4 4 H 1.48501 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47085 * 299.99877 * 3 2 1 6 6 H 1.48494 * 109.47049 * 59.99962 * 3 2 1 7 7 C 1.38795 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00237 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00013 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00025 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47101 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99966 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00093 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00234 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47480 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47469 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.46817 * 64.99892 * 16 15 14 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.47233 * 184.99697 * 16 15 14 22 22 H 0.97004 * 120.00134 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.47085 * 60.00198 * 10 9 7 24 24 H 1.08997 * 109.47465 * 300.00123 * 10 9 7 25 25 H 0.96996 * 120.00407 * 359.97438 * 13 11 10 26 26 H 1.08997 * 109.47622 * 59.99100 * 14 13 11 27 27 H 1.09006 * 109.47216 * 299.99688 * 14 13 11 28 28 H 1.09008 * 109.47149 * 59.99636 * 15 14 13 29 29 H 1.08997 * 109.47163 * 299.99707 * 15 14 13 30 30 H 1.09002 * 109.47070 * 305.00072 * 16 15 14 31 31 H 1.08996 * 109.47853 * 300.00202 * 17 16 15 32 32 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 33 33 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 35 35 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 36 36 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 39 39 H 1.08992 * 109.47399 * 300.00166 * 21 16 15 40 40 H 1.09004 * 109.46724 * 60.00652 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8442 -6.3430 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.5026 -8.6985 -0.0018 16 6 2.9661 -10.1313 -0.0024 17 6 2.2168 -10.3948 -1.3101 18 6 1.6808 -11.8278 -1.3111 19 6 2.8481 -12.8090 -1.1855 20 6 3.5974 -12.5456 0.1222 21 6 4.1330 -11.1129 0.1234 22 1 -0.4850 0.8401 -0.0004 23 1 3.1245 -3.7313 0.8895 24 1 3.1245 -3.7313 -0.8905 25 1 3.8010 -6.1835 -0.0004 26 1 1.7227 -7.8747 -0.8925 27 1 1.7210 -7.8756 0.8874 28 1 4.1107 -8.5389 0.8887 29 1 4.1117 -8.5379 -0.8913 30 1 2.2863 -10.2652 0.8391 31 1 1.3855 -9.6955 -1.3998 32 1 2.8965 -10.2609 -2.1516 33 1 1.1474 -12.0156 -2.2429 34 1 1.0012 -11.9620 -0.4695 35 1 3.5277 -12.6747 -2.0270 36 1 2.4662 -13.8299 -1.1857 37 1 4.4286 -13.2448 0.2119 38 1 2.9177 -12.6798 0.9637 39 1 4.8126 -10.9791 -0.7181 40 1 4.6667 -10.9252 1.0551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041831749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:22 Heat of formation + Delta-G solvation = -81.198198 kcal Electronic energy + Delta-G solvation = -17994.430758 eV Core-core repulsion = 15126.502879 eV Total energy + Delta-G solvation = -2867.927878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.46320 -38.72848 -35.19468 -32.67279 -32.41497 -31.05434 -29.70149 -27.49965 -25.47189 -23.70663 -22.69234 -21.09419 -20.33457 -19.89687 -17.79781 -16.28009 -16.05970 -15.63877 -15.38943 -14.79473 -14.67824 -14.45206 -14.24385 -13.87993 -13.74953 -13.16751 -12.83113 -12.61926 -12.40686 -12.23158 -12.01301 -11.72462 -11.42747 -11.38112 -11.07656 -11.05033 -11.00567 -10.75565 -10.71758 -10.36978 -10.21042 -9.78926 -9.34877 -9.06611 -8.81342 -8.21212 -6.48366 -6.20574 -3.90854 3.07318 3.14606 3.22361 3.29353 3.34565 3.75668 4.21548 4.37428 4.38718 4.47981 4.76583 4.83305 5.04604 5.08782 5.14526 5.15882 5.19911 5.23766 5.25051 5.34738 5.40509 5.51356 5.64750 5.66371 5.72811 5.78810 5.85545 5.90213 5.91435 5.95479 5.98794 6.03220 6.14981 6.16400 6.23424 6.68385 7.61061 7.76427 8.36689 8.66342 9.24820 10.86930 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.061405 B = 0.002634 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.878844 B =10626.143871 C =10904.409982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.740 5.740 14 C 0.119 3.881 15 C -0.126 4.126 16 C -0.083 4.083 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.113 4.113 22 H 0.268 0.732 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.397 0.603 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.863 -23.554 -0.906 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.005 4.005 15 C -0.164 4.164 16 C -0.102 4.102 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.151 4.151 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.231 0.769 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.684 -23.787 -0.907 25.014 hybrid contribution 2.445 1.356 0.002 2.796 sum 10.129 -22.432 -0.905 24.629 Atomic orbital electron populations 1.70031 1.05950 1.27323 1.47000 1.25001 0.95037 0.99051 0.94583 0.86111 0.79572 0.81878 0.77889 1.19630 1.20573 1.20570 1.22909 0.94936 0.91650 1.58748 0.90889 1.85401 1.05053 0.96355 1.96704 1.23530 1.06494 0.95481 1.04878 1.20308 0.86558 0.86325 0.75205 1.90697 1.15396 1.85655 1.47572 1.46025 1.09871 1.05684 1.77859 1.21347 0.96242 0.80550 1.02327 1.21847 0.97786 0.94115 1.02676 1.21087 0.97179 0.93365 0.98581 1.21680 1.00147 0.96598 0.97271 1.21540 0.97585 0.94877 1.01803 1.21545 0.97556 0.98850 0.97806 1.21522 0.99735 0.96566 0.97917 1.21565 0.97379 0.94337 1.01815 0.92249 0.89261 0.89268 0.76931 0.91510 0.91826 0.91287 0.91295 0.90839 0.91340 0.91937 0.92073 0.91974 0.92119 0.92308 0.92214 0.92019 0.91972 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.15 7.85 -10.99 -0.09 10.07 16 12 O -0.52 -12.10 15.86 5.56 0.09 -12.02 16 13 N -0.74 -10.13 5.56 -60.30 -0.33 -10.47 16 14 C 0.12 1.42 5.43 -4.04 -0.02 1.39 16 15 C -0.13 -1.05 4.80 -26.73 -0.13 -1.18 16 16 C -0.08 -0.64 2.19 -90.62 -0.20 -0.84 16 17 C -0.12 -0.96 4.96 -26.73 -0.13 -1.09 16 18 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 19 C -0.12 -0.79 5.92 -26.73 -0.16 -0.94 16 20 C -0.12 -0.77 5.92 -26.76 -0.16 -0.93 16 21 C -0.11 -0.76 5.20 -26.76 -0.14 -0.90 16 22 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 24 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 25 H 0.40 4.21 8.47 -40.82 -0.35 3.87 16 26 H 0.07 0.86 6.57 -51.93 -0.34 0.52 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 6.57 -51.93 -0.34 0.28 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -33.73 335.27 -9.37 -43.10 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.91 Total: -1.19 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.76 Total: -11.45 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.40 Total: -36.10 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.73 -9.37 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041831749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.096 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds