Wall clock time and date at job start Mon Mar 30 2020 02:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00413 * 2 1 4 4 H 1.48496 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46585 * 300.00004 * 3 2 1 6 6 H 1.48496 * 109.47014 * 59.99503 * 3 2 1 7 7 C 1.37884 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00259 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47304 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99985 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00165 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99995 * 180.02562 * 11 10 9 14 14 S 1.81400 * 109.47386 * 179.97438 * 13 11 10 15 15 C 1.81389 * 103.00261 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.46817 * 64.99991 * 16 15 14 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.47233 * 184.99797 * 16 15 14 22 22 H 0.97003 * 119.99691 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47011 * 59.99771 * 9 7 2 24 24 H 1.08997 * 109.47363 * 300.00248 * 9 7 2 25 25 H 0.96995 * 119.99934 * 359.97438 * 10 9 7 26 26 H 1.09002 * 109.47033 * 60.00075 * 13 11 10 27 27 H 1.08997 * 109.47344 * 300.00551 * 13 11 10 28 28 H 1.09008 * 109.47130 * 60.00131 * 15 14 13 29 29 H 1.08997 * 109.47306 * 300.00126 * 15 14 13 30 30 H 1.09002 * 109.47070 * 305.00171 * 16 15 14 31 31 H 1.08996 * 109.47853 * 300.00202 * 17 16 15 32 32 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 33 33 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 35 35 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 36 36 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 39 39 H 1.08992 * 109.47399 * 300.00166 * 21 16 15 40 40 H 1.09004 * 109.46724 * 60.00652 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6128 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7329 -6.0289 0.0016 14 16 1.8259 -7.5998 0.0030 15 6 3.1525 -8.8370 0.0044 16 6 2.5417 -10.2398 0.0063 17 6 1.7789 -10.4656 -1.3006 18 6 1.1686 -11.8686 -1.2991 19 6 2.2830 -12.9094 -1.1725 20 6 3.0457 -12.6836 0.1344 21 6 3.6556 -11.2809 0.1331 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 3.1566 -3.4355 0.0002 26 1 3.3595 -5.9708 0.8917 27 1 3.3597 -5.9715 -0.8882 28 1 3.7685 -8.7081 0.8944 29 1 3.7688 -8.7099 -0.8856 30 1 1.8563 -10.3365 0.8483 31 1 0.9854 -9.7239 -1.3911 32 1 2.4643 -10.3689 -2.1427 33 1 0.6256 -12.0297 -2.2304 34 1 0.4833 -11.9657 -0.4571 35 1 2.9682 -12.8122 -2.0146 36 1 1.8481 -13.9089 -1.1710 37 1 3.8392 -13.4253 0.2248 38 1 2.3603 -12.7807 0.9765 39 1 4.3409 -11.1842 -0.7089 40 1 4.1989 -11.1200 1.0642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058487512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:09 Heat of formation + Delta-G solvation = -78.003099 kcal Electronic energy + Delta-G solvation = -17899.654460 eV Core-core repulsion = 15031.865132 eV Total energy + Delta-G solvation = -2867.789328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90725 -38.69586 -34.23269 -32.89925 -32.39297 -30.98186 -29.99306 -26.99692 -26.52607 -22.83907 -22.64877 -21.62417 -20.00668 -19.78985 -17.25658 -16.14341 -15.77989 -15.74139 -15.24299 -15.07842 -14.72863 -14.53220 -14.21513 -14.08589 -13.55022 -13.16130 -12.87453 -12.74198 -12.42422 -12.12050 -12.00820 -11.72451 -11.58843 -11.33834 -11.24233 -10.95226 -10.92153 -10.71618 -10.38565 -10.34196 -10.32021 -9.69722 -9.40794 -9.20027 -8.77163 -7.95475 -7.47202 -6.18751 -4.25981 1.59539 2.67453 3.22133 3.26303 3.29148 3.32170 4.03956 4.34465 4.35780 4.44598 4.53517 4.81860 4.98292 5.05373 5.16871 5.19455 5.20419 5.22922 5.27559 5.29241 5.34290 5.42769 5.50976 5.52775 5.66385 5.79281 5.89649 5.91125 5.94635 6.04113 6.19399 6.25842 7.26304 7.36608 7.48730 7.62371 7.93894 8.54710 8.73555 9.01912 9.40473 10.91484 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.063934 B = 0.002641 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.846459 B =10598.028873 C =10858.858861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.708 5.708 11 C 0.513 3.487 12 O -0.535 6.535 13 C -0.128 4.128 14 S -0.180 6.180 15 C -0.106 4.106 16 C -0.068 4.068 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.110 4.110 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.391 0.609 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 -23.175 -0.921 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.357 5.357 11 C 0.296 3.704 12 O -0.413 6.413 13 C -0.280 4.280 14 S 0.047 5.953 15 C -0.255 4.255 16 C -0.087 4.087 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.149 4.149 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.224 0.776 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.296 -23.302 -0.921 24.435 hybrid contribution 2.373 1.367 0.013 2.739 sum 9.670 -21.935 -0.908 23.989 Atomic orbital electron populations 1.69988 1.06110 1.27253 1.48814 1.24965 0.94932 0.99493 0.94672 0.86346 0.79784 0.82905 0.77787 1.19649 1.20763 1.20757 1.21247 0.93292 0.90374 1.53298 0.91826 1.19151 0.88245 0.81737 0.97917 1.46392 1.11250 1.05661 1.72421 1.19550 0.88781 0.83790 0.78281 1.90706 1.16229 1.84293 1.50068 1.23595 1.02009 0.96027 1.06329 1.87478 1.12494 0.97390 1.97941 1.23618 1.00199 0.97114 1.04545 1.20888 0.97226 0.91124 0.99472 1.21668 1.00195 0.97028 0.96673 1.21540 0.97656 0.94674 1.01874 1.21554 0.97801 0.98688 0.97739 1.21511 0.99576 0.96480 0.98051 1.21577 0.97314 0.94141 1.01892 0.92443 0.95382 0.95368 0.77630 0.87913 0.87886 0.90363 0.90383 0.90245 0.90488 0.91968 0.91976 0.91953 0.92106 0.92268 0.92097 0.91922 0.91875 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -14.74 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 10 N -0.71 -14.92 5.55 -61.48 -0.34 -15.26 16 11 C 0.51 10.43 7.85 -10.99 -0.09 10.34 16 12 O -0.54 -13.27 15.86 5.56 0.09 -13.18 16 13 C -0.13 -1.86 6.42 36.00 0.23 -1.63 16 14 S -0.18 -2.64 19.68 -107.50 -2.12 -4.75 16 15 C -0.11 -1.07 5.38 37.16 0.20 -0.87 16 16 C -0.07 -0.62 2.19 -90.62 -0.20 -0.81 16 17 C -0.12 -1.11 5.03 -26.73 -0.13 -1.25 16 18 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 19 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 20 C -0.12 -0.81 5.92 -26.76 -0.16 -0.97 16 21 C -0.11 -0.81 5.20 -26.76 -0.14 -0.95 16 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 26 H 0.10 1.25 8.14 -51.92 -0.42 0.82 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.87 7.13 -51.93 -0.37 0.50 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -31.86 336.88 -9.63 -41.49 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.01 Total: 1.25 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.05 Total: -5.04 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.40 Total: -40.64 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -2.12 Total: -4.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.86 -9.63 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058487512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.510 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds