Wall clock time and date at job start Mon Mar 30 2020 01:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 111.00062 * 2 1 4 4 C 1.46900 * 110.99983 * 123.95792 * 2 1 3 5 5 C 1.53002 * 109.47200 * 66.04325 * 4 2 1 6 6 N 1.46500 * 109.47159 * 179.97438 * 5 4 2 7 7 N 1.40580 * 127.38506 * 269.95803 * 6 5 4 8 8 N 1.28905 * 106.83588 * 180.02562 * 7 6 5 9 9 N 1.28423 * 110.33647 * 359.72579 * 8 7 6 10 10 C 1.31542 * 110.50029 * 0.45729 * 9 8 7 11 11 S 1.76198 * 126.45130 * 179.81686 * 10 9 8 12 12 C 1.81002 * 100.00092 * 359.69140 * 11 10 9 13 13 C 1.52997 * 109.47326 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 H 1.08998 * 109.46522 * 296.04534 * 1 2 3 23 23 H 1.09004 * 109.46899 * 56.03810 * 1 2 3 24 24 H 1.08993 * 109.47150 * 176.04655 * 1 2 3 25 25 H 1.08996 * 109.46792 * 183.95569 * 3 2 1 26 26 H 1.09001 * 109.47569 * 303.95691 * 3 2 1 27 27 H 1.09003 * 109.46990 * 63.95785 * 3 2 1 28 28 H 1.08997 * 109.46914 * 306.04462 * 4 2 1 29 29 H 1.09004 * 109.46978 * 186.04032 * 4 2 1 30 30 H 1.08999 * 109.47201 * 59.99705 * 5 4 2 31 31 H 1.08998 * 109.46933 * 300.00204 * 5 4 2 32 32 H 1.09002 * 109.47154 * 300.00093 * 12 11 10 33 33 H 1.09001 * 109.47171 * 60.00111 * 12 11 10 34 34 H 1.09002 * 109.47153 * 300.00184 * 13 12 11 35 35 H 1.08998 * 109.47533 * 59.99813 * 13 12 11 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6315 -2.2427 0.9702 6 7 2.1570 -3.0067 2.1044 7 7 3.4156 -3.6244 2.2076 8 7 3.4626 -4.1845 3.3677 9 7 2.3680 -3.9792 4.0071 10 6 1.5344 -3.2698 3.2775 11 16 -0.0847 -2.7530 3.7424 12 6 -0.1827 -3.4777 5.3981 13 6 -1.5422 -3.1499 6.0187 14 6 -1.6241 -3.7538 7.3969 15 1 -0.7897 -4.3149 7.7910 16 6 -2.7637 -3.5891 8.1552 17 7 -3.7796 -2.9053 7.6755 18 14 -2.8655 -4.3382 9.8634 19 1 -2.3592 -3.3631 10.8625 20 1 -4.2782 -4.6755 10.1727 21 1 -2.0398 -5.5715 9.9130 22 1 -0.3632 0.4512 0.9233 23 1 -0.3633 0.5741 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0828 1.3431 -0.0709 26 1 1.5899 1.9164 -0.8524 27 1 1.7045 1.8723 0.9234 28 1 1.5612 -0.3873 2.0627 29 1 3.0798 -0.6612 1.1755 30 1 2.0657 -2.6214 0.0450 31 1 0.5472 -2.3475 0.9322 32 1 -0.0658 -4.5592 5.3288 33 1 0.6101 -3.0658 6.0225 34 1 -1.6587 -2.0683 6.0879 35 1 -2.3353 -3.5614 5.3944 36 1 -4.5813 -2.7891 8.2091 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076922977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:48 Heat of formation + Delta-G solvation = 111.348457 kcal Electronic energy + Delta-G solvation = -18082.671423 eV Core-core repulsion = 15151.845402 eV Total energy + Delta-G solvation = -2930.826021 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.74384 -38.21960 -35.10289 -33.86284 -32.10395 -31.01601 -30.15456 -27.96068 -25.84689 -25.31729 -23.40301 -22.91572 -21.65104 -21.07030 -17.95791 -16.94261 -16.64950 -16.48548 -15.97165 -15.38867 -14.84108 -14.58007 -14.47859 -14.08529 -13.94417 -13.08963 -12.97089 -12.61537 -12.39881 -12.28750 -12.12418 -12.06250 -11.78794 -11.45308 -11.20102 -10.99490 -10.89953 -10.69107 -10.47585 -10.36612 -10.26514 -9.80981 -9.29743 -8.85552 -8.52168 -7.77706 -6.16682 -4.21199 0.94029 0.97384 2.04312 2.35105 2.44054 3.25975 3.32594 3.36940 3.57828 4.11518 4.35725 4.36275 4.68658 4.78082 4.87912 5.00121 5.05069 5.17230 5.20152 5.29359 5.37335 5.44839 5.51366 5.53877 5.61603 5.82569 6.01286 6.02507 6.48158 6.51286 6.52666 7.34733 7.39965 7.78887 8.13356 8.52353 8.83317 9.43960 10.94168 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.004056 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.124324 B = 6902.035173 C = 7911.709299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.038 3.962 5 C 0.127 3.873 6 N -0.371 5.371 7 N -0.094 5.094 8 N -0.036 5.036 9 N -0.333 5.333 10 C 0.226 3.774 11 S -0.001 6.001 12 C -0.080 4.080 13 C 0.036 3.964 14 C -0.520 4.520 15 H 0.063 0.937 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.271 1.271 22 H 0.036 0.964 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.375 6.809 -15.768 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.267 5.267 3 C -0.123 4.123 4 C -0.092 4.092 5 C 0.004 3.996 6 N -0.171 5.171 7 N -0.081 5.081 8 N -0.032 5.032 9 N -0.190 5.190 10 C -0.158 4.158 11 S 0.227 5.773 12 C -0.229 4.229 13 C -0.004 4.004 14 C -0.560 4.560 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 H 0.055 0.945 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.825 6.616 -16.574 19.486 hybrid contribution -0.227 -0.139 1.885 1.903 sum 7.599 6.476 -14.690 17.761 Atomic orbital electron populations 1.22573 0.86640 1.02867 1.01495 1.61918 1.08634 1.14441 1.41669 1.22398 1.00896 0.87978 1.01058 1.22440 1.01693 0.91885 0.93157 1.21965 1.00487 0.90530 0.86620 1.51513 1.11842 1.39922 1.13773 1.82393 0.97997 1.12327 1.15376 1.77842 1.14361 1.12429 0.98540 1.75030 0.98457 1.19487 1.26023 1.28174 1.02949 0.98067 0.86598 1.85960 1.00042 1.66698 1.24632 1.24191 1.06429 1.03389 0.88843 1.19010 0.87451 0.98189 0.95754 1.21030 1.01332 1.34443 0.99216 0.91923 1.24998 0.95460 0.95081 0.98580 1.69956 1.05237 1.40195 1.37641 0.86470 0.77357 0.79687 0.83835 1.20469 1.21082 1.19605 0.94543 0.90783 0.90907 0.91158 0.90805 0.95109 0.93060 0.89544 0.86590 0.87480 0.89071 0.89108 0.95307 0.95241 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.32 60.07 0.56 0.65 16 2 N -0.54 -4.50 5.02 -251.26 -1.26 -5.76 16 3 C 0.02 0.17 9.57 60.06 0.57 0.75 16 4 C 0.04 0.36 5.28 -3.82 -0.02 0.34 16 5 C 0.13 1.28 6.30 -4.04 -0.03 1.25 16 6 N -0.37 -5.26 3.69 -61.30 -0.23 -5.49 16 7 N -0.09 -1.52 13.93 60.35 0.84 -0.68 16 8 N -0.04 -0.66 13.38 60.35 0.81 0.15 16 9 N -0.33 -6.24 11.57 30.50 0.35 -5.88 16 10 C 0.23 3.70 8.15 -89.18 -0.73 2.97 16 11 S 0.00 -0.01 21.79 -107.50 -2.34 -2.35 16 12 C -0.08 -1.57 5.17 37.16 0.19 -1.38 16 13 C 0.04 0.84 4.98 -27.89 -0.14 0.71 16 14 C -0.52 -13.84 9.11 -34.44 -0.31 -14.16 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 18 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 24 H 0.07 0.50 6.47 -51.93 -0.34 0.16 16 25 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 27 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 30 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 0.97 6.26 -51.93 -0.33 0.64 16 32 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 33 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -29.62 323.18 -6.51 -36.13 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -5.27 Total: -4.88 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 0.00 Total: -7.30 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 1.25 Total: -42.25 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.34 Total: -2.35 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.62 -6.51 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076922977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.477 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds