Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99809 * 2 1 4 4 H 1.48503 * 109.47150 * 269.99816 * 3 2 1 5 5 H 1.48499 * 109.47102 * 29.99640 * 3 2 1 6 6 H 1.48501 * 109.47164 * 150.00090 * 3 2 1 7 7 C 1.37874 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00517 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99761 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47009 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46972 * 174.71240 * 10 9 7 12 12 C 1.49332 * 110.99757 * 54.53141 * 11 10 9 13 13 C 1.53686 * 102.46901 * 150.17835 * 12 11 10 14 14 H 1.08997 * 112.28136 * 89.45463 * 13 12 11 15 15 C 1.52824 * 114.07368 * 217.84117 * 13 12 11 16 16 C 1.53453 * 108.88206 * 169.52686 * 15 13 12 17 17 C 1.51173 * 112.20225 * 302.21313 * 16 15 13 18 18 O 1.21255 * 120.28092 * 205.13881 * 17 16 15 19 19 C 1.46499 * 119.43738 * 25.11379 * 17 16 15 20 20 C 1.39187 * 127.23175 * 182.45784 * 19 17 16 21 21 C 1.38464 * 119.77588 * 176.79950 * 20 19 17 22 22 C 1.39135 * 123.33918 * 359.17737 * 21 20 19 23 23 C 1.38802 * 110.99897 * 174.78268 * 11 10 9 24 24 C 1.38443 * 109.69668 * 223.93136 * 23 11 10 25 25 H 0.96998 * 120.00486 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47070 * 60.00055 * 9 7 2 27 27 H 1.09001 * 109.47002 * 300.00228 * 9 7 2 28 28 H 1.08998 * 109.46978 * 54.71467 * 10 9 7 29 29 H 1.08998 * 109.46742 * 294.71238 * 10 9 7 30 30 H 1.09005 * 110.82415 * 268.35319 * 12 11 10 31 31 H 1.09000 * 110.82892 * 31.90722 * 12 11 10 32 32 H 1.08993 * 109.59188 * 49.67107 * 15 13 12 33 33 H 1.09007 * 109.59013 * 289.38257 * 15 13 12 34 34 H 1.09009 * 108.93167 * 62.91490 * 16 15 13 35 35 H 1.09004 * 108.93650 * 181.50846 * 16 15 13 36 36 H 1.08000 * 120.11468 * 356.78073 * 20 19 17 37 37 H 1.07993 * 118.32718 * 179.14946 * 21 20 19 38 38 H 1.07996 * 121.21238 * 181.42167 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 7 5.4851 -2.6385 -0.1268 12 6 6.1161 -1.7946 0.9313 13 6 7.4729 -2.4851 1.1411 14 1 8.2441 -2.0907 0.4794 15 6 7.9383 -2.5157 2.5964 16 6 9.1531 -3.4465 2.7099 17 6 8.8461 -4.8472 2.2313 18 8 9.4858 -5.7895 2.6475 19 6 7.7688 -5.0567 1.2609 20 6 7.3198 -6.2711 0.7501 21 6 6.2395 -6.2956 -0.1157 22 6 5.5457 -5.1543 -0.5053 23 6 5.9926 -3.9253 -0.0118 24 6 7.1116 -3.9144 0.8033 25 1 -0.4851 0.8400 -0.0004 26 1 3.8752 -0.6795 0.8894 27 1 3.8746 -0.6807 -0.8905 28 1 3.5828 -3.1778 -0.8367 29 1 3.7380 -3.1212 0.9356 30 1 6.2536 -0.7718 0.5803 31 1 5.5252 -1.8150 1.8470 32 1 7.1330 -2.8872 3.2299 33 1 8.2175 -1.5104 2.9121 34 1 9.9680 -3.0389 2.1116 35 1 9.4692 -3.4901 3.7521 36 1 7.8124 -7.1911 1.0280 37 1 5.9195 -7.2492 -0.5089 38 1 4.6931 -5.2156 -1.1653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184799343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = -2.448115 kcal Electronic energy + Delta-G solvation = -20438.563062 eV Core-core repulsion = 17438.606092 eV Total energy + Delta-G solvation = -2999.956970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37397 -39.14766 -36.63451 -35.58815 -33.24771 -31.28027 -30.61859 -29.41027 -28.43586 -25.06993 -24.50162 -23.00805 -22.05513 -20.77561 -20.20230 -18.97933 -17.08567 -16.49902 -16.24486 -16.03707 -15.30400 -15.13036 -14.89592 -14.45027 -14.19847 -13.94889 -13.48536 -13.21389 -13.03539 -12.73978 -12.39197 -12.22582 -12.09705 -11.74622 -11.45722 -11.27189 -11.20703 -10.98129 -10.95911 -10.50906 -10.09148 -9.91365 -9.74652 -9.54623 -9.32778 -8.84119 -8.62785 -7.55011 -6.13344 -4.13079 0.59135 1.36207 2.32275 3.24896 3.32579 3.33910 3.60661 3.85684 3.94611 4.36570 4.37066 4.46566 4.67057 4.92995 4.94665 5.08428 5.18101 5.20217 5.21436 5.29224 5.38436 5.47098 5.58154 5.64090 5.76094 5.81499 5.90050 5.93777 5.99953 6.08822 6.22865 6.31344 6.43063 6.50479 6.67261 6.94105 7.09170 7.28269 7.36934 7.47346 7.68474 8.41357 8.89561 9.47816 10.99786 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.004795 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.243853 B = 5837.535862 C = 6594.349263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.011 4.011 10 C 0.067 3.933 11 N -0.483 5.483 12 C 0.059 3.941 13 C -0.068 4.068 14 H 0.104 0.896 15 C -0.105 4.105 16 C -0.159 4.159 17 C 0.409 3.591 18 O -0.463 6.463 19 C -0.136 4.136 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.103 4.103 23 C 0.111 3.889 24 C -0.117 4.117 25 H 0.264 0.736 26 H 0.018 0.982 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.860 -6.802 3.035 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.058 4.058 11 N -0.195 5.195 12 C -0.066 4.066 13 C -0.086 4.086 14 H 0.122 0.878 15 C -0.143 4.143 16 C -0.197 4.197 17 C 0.288 3.712 18 O -0.339 6.339 19 C -0.137 4.137 20 C -0.111 4.111 21 C -0.129 4.129 22 C -0.125 4.125 23 C 0.011 3.989 24 C -0.120 4.120 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.073 -6.856 2.765 18.605 hybrid contribution 0.014 0.686 0.371 0.780 sum 17.087 -6.170 3.136 18.435 Atomic orbital electron populations 1.69903 1.06317 1.27063 1.50581 1.24984 0.94719 0.99160 0.94328 0.86764 0.80252 0.83530 0.78642 1.20151 1.21344 1.19030 1.20988 0.88991 0.94674 1.51638 0.90958 1.19651 0.97212 0.91018 0.97009 1.22401 0.81341 1.01386 1.00629 1.60243 1.09111 1.05877 1.44309 1.23300 0.91968 0.97954 0.93374 1.21103 0.98300 0.91940 0.97247 0.87835 1.21564 0.97153 0.99838 0.95698 1.22047 1.00223 0.93647 1.03736 1.22299 0.80021 0.90499 0.78391 1.90511 1.46387 1.44840 1.52176 1.19564 0.99767 0.93366 1.01015 1.20900 0.96483 0.96840 0.96908 1.21068 0.95540 0.98187 0.98085 1.21183 1.00501 0.89538 1.01231 1.19380 0.95063 0.90222 0.94259 1.21143 0.97748 0.95120 0.98033 0.92579 0.96389 0.95891 0.90469 0.94183 0.88517 0.91230 0.90854 0.90059 0.88083 0.88590 0.85413 0.85743 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.28 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.25 3.72 -27.88 -0.10 -0.36 16 10 C 0.07 1.27 4.57 -3.82 -0.02 1.26 16 11 N -0.48 -7.99 5.12 -168.83 -0.86 -8.85 16 12 C 0.06 0.84 5.09 -2.11 -0.01 0.83 16 13 C -0.07 -0.79 3.46 -91.24 -0.32 -1.10 16 14 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.10 -0.98 5.40 -26.59 -0.14 -1.13 16 16 C -0.16 -1.47 5.89 -27.42 -0.16 -1.63 16 17 C 0.41 5.16 7.11 -30.75 -0.22 4.94 16 18 O -0.46 -6.99 17.70 5.58 0.10 -6.89 16 19 C -0.14 -1.81 5.89 -105.74 -0.62 -2.43 16 20 C -0.09 -1.16 9.87 -39.15 -0.39 -1.55 16 21 C -0.11 -1.32 9.88 -39.17 -0.39 -1.71 16 22 C -0.10 -1.41 9.81 -38.68 -0.38 -1.79 16 23 C 0.11 1.69 5.97 -84.06 -0.50 1.18 16 24 C -0.12 -1.60 5.41 -103.81 -0.56 -2.16 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.40 6.14 -51.93 -0.32 0.08 16 27 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 28 H 0.08 1.48 7.87 -51.93 -0.41 1.07 16 29 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.01 7.50 -51.93 -0.39 0.62 16 32 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.14 1.71 7.88 -52.49 -0.41 1.30 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -31.16 308.54 -9.57 -40.72 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.31 Total: -1.16 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -4.24 Total: -18.46 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.09 Total: -35.14 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.10 Total: -6.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.16 -9.57 -40.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184799343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.274 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds