Wall clock time and date at job start Mon Mar 30 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86799 * 119.99524 * 2 1 4 4 H 1.48502 * 109.46872 * 179.72413 * 3 2 1 5 5 H 1.48498 * 109.47431 * 299.72255 * 3 2 1 6 6 H 1.48506 * 109.47278 * 59.72806 * 3 2 1 7 7 C 1.40045 * 120.00011 * 179.72709 * 2 1 3 8 8 H 1.07999 * 119.99814 * 335.69858 * 7 2 1 9 9 C 1.46371 * 119.99905 * 155.70465 * 7 2 1 10 10 O 1.21695 * 120.00099 * 345.39113 * 9 7 2 11 11 N 1.34774 * 120.00411 * 165.39495 * 9 7 2 12 12 C 1.47300 * 135.88286 * 359.63247 * 11 9 7 13 13 C 1.52596 * 87.54848 * 154.00499 * 12 11 9 14 14 C 1.52623 * 121.93947 * 150.04311 * 13 12 11 15 15 C 1.54011 * 86.67497 * 102.92691 * 14 13 12 16 16 C 1.52625 * 122.22001 * 260.72717 * 13 12 11 17 17 C 1.47292 * 135.89386 * 179.97438 * 11 9 7 18 18 H 1.09005 * 113.52246 * 91.27789 * 17 11 9 19 19 C 1.50699 * 113.52490 * 320.73445 * 17 11 9 20 20 C 1.38237 * 120.00001 * 339.23395 * 19 17 11 21 21 C 1.38231 * 120.00401 * 179.78946 * 20 19 17 22 22 C 1.38238 * 119.99583 * 0.45944 * 21 20 19 23 23 C 1.38237 * 120.00244 * 359.76512 * 22 21 20 24 24 C 1.38235 * 120.00208 * 159.50309 * 19 17 11 25 25 H 0.97000 * 119.99987 * 182.85614 * 1 2 3 26 26 H 1.09001 * 113.51796 * 268.64999 * 12 11 9 27 27 H 1.08994 * 113.52629 * 39.26491 * 12 11 9 28 28 H 1.09005 * 113.67777 * 217.36703 * 14 13 12 29 29 H 1.08999 * 113.67997 * 348.47829 * 14 13 12 30 30 H 1.09001 * 113.56270 * 269.87279 * 15 14 13 31 31 H 1.09000 * 113.56848 * 139.12808 * 15 14 13 32 32 H 1.09008 * 113.68204 * 11.74446 * 16 13 12 33 33 H 1.09000 * 113.68419 * 142.75787 * 16 13 12 34 34 H 1.08003 * 119.99581 * 359.97438 * 20 19 17 35 35 H 1.07994 * 120.00374 * 180.25162 * 21 20 19 36 36 H 1.07999 * 119.99862 * 179.79800 * 22 21 20 37 37 H 1.07994 * 120.00305 * 180.02562 * 23 22 21 38 38 H 1.08001 * 119.99733 * 359.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 0.0067 5 1 1.8870 2.3936 -1.2158 6 1 1.8768 2.3994 1.2092 7 6 2.0070 -1.2128 0.0058 8 1 1.5387 -2.1048 0.3949 9 6 3.3735 -1.2714 -0.5155 10 8 3.8077 -0.3554 -1.1888 11 7 4.1509 -2.3399 -0.2500 12 6 3.9992 -3.5972 0.5021 13 6 5.0597 -4.1979 -0.4160 14 6 6.0012 -5.3038 0.0531 15 6 5.1120 -6.2759 -0.7446 16 6 4.6986 -5.0731 -1.6131 17 6 5.5244 -2.7566 -0.5802 18 1 6.2624 -2.4492 0.1608 19 6 5.9347 -2.4139 -1.9892 20 6 4.9709 -2.1759 -2.9512 21 6 5.3472 -1.8572 -4.2426 22 6 6.6872 -1.7860 -4.5743 23 6 7.6511 -2.0286 -3.6135 24 6 7.2747 -2.3430 -2.3211 25 1 -0.4850 -0.8390 0.0419 26 1 4.3160 -3.5228 1.5424 27 1 3.0161 -4.0547 0.3912 28 1 7.0136 -5.2131 -0.3407 29 1 5.9771 -5.4717 1.1298 30 1 4.2920 -6.6948 -0.1614 31 1 5.6747 -7.0339 -1.2894 32 1 3.6376 -5.0575 -1.8626 33 1 5.3404 -4.9158 -2.4799 34 1 3.9239 -2.2359 -2.6930 35 1 4.5942 -1.6673 -4.9931 36 1 6.9812 -1.5402 -5.5841 37 1 8.6980 -1.9725 -3.8726 38 1 8.0277 -2.5329 -1.5704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294266460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:30 Heat of formation + Delta-G solvation = 42.889613 kcal Electronic energy + Delta-G solvation = -21155.406554 eV Core-core repulsion = 18157.415576 eV Total energy + Delta-G solvation = -2997.990978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87432 -38.23337 -37.07143 -34.85104 -32.86056 -31.06429 -30.42046 -27.94595 -25.73014 -25.55705 -25.08306 -22.51959 -21.99366 -21.10184 -19.03148 -17.87530 -17.49774 -16.46702 -15.57734 -15.46202 -15.09693 -14.60481 -14.45127 -13.94337 -13.81762 -13.46039 -13.02156 -12.75420 -12.51969 -12.23152 -12.11099 -12.01130 -11.78363 -11.43901 -11.24359 -10.83865 -10.72251 -10.55787 -10.39237 -10.13976 -9.97221 -9.83158 -9.27665 -8.83061 -8.46942 -8.34423 -7.76313 -7.51321 -7.02514 -4.84138 1.74815 1.88116 3.49074 3.53841 3.93852 4.01907 4.23700 4.27297 4.48783 4.53997 4.74607 4.91016 4.95963 5.24334 5.26857 5.33904 5.46801 5.50175 5.51385 5.58068 5.79144 5.83943 5.89671 5.92836 5.96837 6.05869 6.09571 6.15443 6.29257 6.42642 6.44914 6.49961 6.53144 6.55205 6.82763 6.97775 7.17975 7.45309 7.76706 7.82188 8.25724 8.85809 9.26749 10.17492 10.29388 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.007873 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.415662 B = 3555.422928 C = 4639.687590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.074 3.926 3 Si 1.080 2.920 4 H -0.251 1.251 5 H -0.285 1.285 6 H -0.307 1.307 7 C -0.606 4.606 8 H 0.069 0.931 9 C 0.581 3.419 10 O -0.602 6.602 11 N -0.649 5.649 12 C 0.137 3.863 13 C -0.114 4.114 14 C -0.122 4.122 15 C -0.138 4.138 16 C -0.106 4.106 17 C 0.178 3.822 18 H 0.082 0.918 19 C -0.072 4.072 20 C -0.060 4.060 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.117 4.117 25 H 0.279 0.721 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.035 -10.808 -2.435 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.145 4.145 3 Si 0.907 3.093 4 H -0.175 1.175 5 H -0.211 1.211 6 H -0.236 1.236 7 C -0.641 4.641 8 H 0.087 0.913 9 C 0.391 3.609 10 O -0.492 6.492 11 N -0.386 5.386 12 C 0.012 3.988 13 C -0.115 4.115 14 C -0.160 4.160 15 C -0.175 4.175 16 C -0.144 4.144 17 C 0.073 3.927 18 H 0.099 0.901 19 C -0.073 4.073 20 C -0.078 4.078 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.136 4.136 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.829 -8.547 -2.865 14.872 hybrid contribution -0.051 -1.718 0.189 1.729 sum 11.778 -10.265 -2.677 15.851 Atomic orbital electron populations 1.70615 1.07974 1.32187 1.34542 1.26857 0.94994 1.04314 0.88333 0.83381 0.78035 0.72133 0.75704 1.17533 1.21128 1.23602 1.21805 0.97130 0.98480 1.46727 0.91326 1.17999 0.84909 0.77685 0.80265 1.90508 1.76608 1.36808 1.45229 1.49723 1.12389 1.21155 1.55348 1.22246 0.97656 0.84092 0.94779 1.22852 0.97882 0.92347 0.98396 1.22656 0.97985 0.95384 1.00022 1.22829 0.99629 0.96328 0.98735 1.22489 1.01737 0.94119 0.96013 1.21080 0.87961 0.91310 0.92363 0.90080 1.19813 0.93049 0.99145 0.95295 1.21071 1.00162 0.94755 0.91826 1.21117 0.95851 1.00782 0.96808 1.21017 0.93257 1.01286 0.98931 1.20921 0.98735 1.01970 0.93544 1.20859 0.95182 1.01124 0.96423 0.90948 0.91223 0.91300 0.89936 0.91230 0.90282 0.91733 0.91320 0.89790 0.85745 0.86688 0.86897 0.86814 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.91 13.65 55.55 0.76 -23.15 16 2 C 0.07 2.15 5.48 -17.37 -0.10 2.05 16 3 Si 1.08 28.14 27.34 -169.99 -4.65 23.50 16 4 H -0.25 -6.82 5.81 56.52 0.33 -6.49 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.31 -7.55 7.11 56.52 0.40 -7.14 16 7 C -0.61 -17.21 9.64 -35.63 -0.34 -17.55 16 8 H 0.07 1.95 8.03 -52.49 -0.42 1.53 16 9 C 0.58 15.63 6.15 -12.99 -0.08 15.55 16 10 O -0.60 -17.51 11.61 5.19 0.06 -17.45 16 11 N -0.65 -14.26 3.12 -180.02 -0.56 -14.82 16 12 C 0.14 2.38 8.19 -7.47 -0.06 2.32 16 13 C -0.11 -1.68 1.23 -155.48 -0.19 -1.87 16 14 C -0.12 -1.39 7.90 -26.40 -0.21 -1.59 16 15 C -0.14 -1.51 8.08 -25.70 -0.21 -1.72 16 16 C -0.11 -1.47 6.87 -26.40 -0.18 -1.65 16 17 C 0.18 3.21 4.17 -72.65 -0.30 2.91 16 18 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 19 C -0.07 -1.32 4.12 -104.62 -0.43 -1.75 16 20 C -0.06 -1.19 7.18 -39.58 -0.28 -1.48 16 21 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 22 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 24 C -0.12 -1.84 9.74 -39.58 -0.39 -2.22 16 25 H 0.28 7.81 8.72 -40.82 -0.36 7.45 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.08 1.19 7.33 -51.93 -0.38 0.81 16 34 H 0.12 2.86 6.15 -52.48 -0.32 2.54 16 35 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -32.00 312.22 -9.07 -41.07 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.42 Total: 0.46 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.97 Total: -14.31 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.20 Total: -37.98 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.06 Total: -17.45 kcal Atomic # 14 Polarization: 28.14 SS G_CDS: -4.65 Total: 23.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.00 -9.07 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294266460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.959 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds