Wall clock time and date at job start Mon Mar 30 2020 01:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86789 * 120.00190 * 2 1 4 4 H 1.48507 * 109.47241 * 240.00112 * 3 2 1 5 5 H 1.48498 * 109.47483 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47429 * 120.00300 * 3 2 1 7 7 C 1.37877 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00045 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47177 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00139 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99795 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00047 * 179.97438 * 11 10 9 14 14 H 1.09000 * 115.57719 * 325.76455 * 13 11 10 15 15 C 1.53131 * 117.51540 * 111.53472 * 13 11 10 16 16 C 1.52370 * 117.51419 * 179.97438 * 13 11 10 17 17 C 1.53786 * 121.20580 * 3.05726 * 16 13 11 18 18 C 1.54473 * 102.20319 * 170.02221 * 17 16 13 19 19 C 1.51424 * 105.23147 * 334.24692 * 18 17 16 20 20 C 1.38474 * 130.36599 * 196.86473 * 19 18 17 21 21 C 1.38090 * 120.26367 * 180.02562 * 20 19 18 22 22 C 1.38255 * 119.91742 * 359.97438 * 21 20 19 23 23 C 1.38084 * 119.93426 * 359.97438 * 22 21 20 24 24 C 1.38378 * 109.79623 * 16.90728 * 19 18 17 25 25 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47113 * 59.99711 * 9 7 2 27 27 H 1.09003 * 109.47043 * 299.99498 * 9 7 2 28 28 H 0.97000 * 119.99629 * 359.97438 * 10 9 7 29 29 H 1.08999 * 117.51536 * 0.02562 * 15 13 11 30 30 H 1.09004 * 117.51619 * 214.88558 * 15 13 11 31 31 H 1.09000 * 110.85513 * 51.84060 * 17 16 13 32 32 H 1.09008 * 110.85704 * 288.20373 * 17 16 13 33 33 H 1.09005 * 110.29117 * 215.30565 * 18 17 16 34 34 H 1.09005 * 110.28973 * 93.18449 * 18 17 16 35 35 H 1.08000 * 119.86220 * 0.04304 * 20 19 18 36 36 H 1.08003 * 120.03768 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.02863 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.85620 * 180.26410 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2028 -3.6127 0.0027 11 6 1.7535 -4.8834 0.0033 12 8 0.5612 -5.1050 0.0035 13 6 2.7328 -6.0289 0.0038 14 1 3.6564 -5.8587 -0.5495 15 6 2.8137 -6.8900 1.2674 16 6 2.1630 -7.4421 0.0050 17 6 0.6469 -7.6899 -0.0643 18 6 0.5757 -9.2152 -0.2982 19 6 1.8847 -9.5764 -0.9682 20 6 2.2470 -10.7100 -1.6761 21 6 3.5172 -10.8234 -2.2058 22 6 4.4315 -9.8014 -2.0298 23 6 4.0724 -8.6695 -1.3252 24 6 2.7998 -8.5537 -0.7909 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5575 -0.8879 27 1 0.6246 -2.5563 0.8920 28 1 3.1565 -3.4355 0.0022 29 1 2.1583 -6.6281 2.0981 30 1 3.7904 -7.2862 1.5452 31 1 0.2029 -7.1481 -0.8994 32 1 0.1658 -7.4185 0.8755 33 1 -0.2628 -9.4589 -0.9506 34 1 0.4806 -9.7394 0.6528 35 1 1.5331 -11.5085 -1.8147 36 1 3.7957 -11.7091 -2.7577 37 1 5.4255 -9.8884 -2.4429 38 1 4.7863 -7.8700 -1.1921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335784494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:39 Heat of formation + Delta-G solvation = -14.963975 kcal Electronic energy + Delta-G solvation = -19760.772076 eV Core-core repulsion = 16760.272378 eV Total energy + Delta-G solvation = -3000.499698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.76519 -40.21013 -37.72656 -36.07631 -34.82711 -34.29024 -31.57627 -29.78911 -29.52087 -26.25002 -25.45193 -23.79721 -23.47429 -21.92150 -21.38133 -20.41268 -18.75616 -17.63051 -17.38863 -16.87459 -16.31549 -16.13498 -15.89642 -15.80978 -15.62301 -14.96310 -14.59155 -14.10604 -13.97045 -13.93637 -13.78033 -13.19606 -13.09689 -12.90904 -12.72493 -12.68825 -12.49727 -12.23551 -11.95297 -11.66822 -11.53001 -11.33900 -11.25170 -10.80320 -10.65215 -9.82871 -9.67575 -9.30401 -8.30371 -6.47329 0.39609 0.50531 1.42150 1.46373 1.54631 1.61179 2.28945 2.49818 2.69082 3.03906 3.07670 3.42693 3.55313 3.61091 3.85842 3.99852 4.16168 4.23661 4.24627 4.40232 4.51159 4.57009 4.70408 4.72369 4.84249 4.93520 5.01234 5.11109 5.12826 5.14170 5.22313 5.24872 5.35297 5.47879 5.59247 5.64082 5.68850 5.78831 5.83514 6.13526 6.63292 6.90646 7.21905 7.48045 8.81659 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.036452 B = 0.003501 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.953356 B = 7996.357145 C = 8410.255164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.268 3.732 10 N -0.705 5.705 11 C 0.522 3.478 12 O -0.590 6.590 13 C -0.177 4.177 14 H 0.146 0.854 15 C -0.111 4.111 16 C -0.063 4.063 17 C -0.072 4.072 18 C -0.079 4.079 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.077 4.077 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.012 1.012 28 H 0.407 0.593 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 -21.199 -1.535 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.145 3.855 10 N -0.354 5.354 11 C 0.310 3.690 12 O -0.471 6.471 13 C -0.198 4.198 14 H 0.164 0.836 15 C -0.148 4.148 16 C -0.064 4.064 17 C -0.109 4.109 18 C -0.116 4.116 19 C -0.105 4.105 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.132 4.132 24 C -0.077 4.077 25 H 0.078 0.922 26 H 0.004 0.996 27 H 0.006 0.994 28 H 0.243 0.757 29 H 0.115 0.885 30 H 0.154 0.846 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.984 -21.210 -1.535 23.492 hybrid contribution 0.063 1.396 -0.044 1.398 sum 10.047 -19.814 -1.579 22.272 Atomic orbital electron populations 1.70133 1.08285 1.28664 1.49862 1.26078 0.95794 1.03939 0.93782 0.85197 0.77919 0.76519 0.79532 1.18659 1.21025 1.18584 1.21594 0.94301 0.90620 1.53096 0.89875 1.18529 0.88649 0.84268 0.94017 1.46164 1.11175 1.05390 1.72634 1.20349 0.88858 0.84182 0.75613 1.90623 1.18812 1.85250 1.52458 1.22207 1.01042 0.89623 1.06886 0.83616 1.23090 1.03654 0.98432 0.89669 1.20319 0.95380 0.90337 1.00366 1.21643 0.92392 0.95002 1.01898 1.21134 0.94707 0.94883 1.00840 1.20795 0.96403 0.94891 0.98390 1.20899 0.97614 0.97053 0.97982 1.21417 0.92986 0.99840 0.99598 1.21358 1.00858 0.93219 0.98845 1.20875 0.94973 0.99156 0.98218 1.19749 0.94685 0.94505 0.98785 0.92213 0.99599 0.99403 0.75714 0.88545 0.84629 0.92696 0.91583 0.89979 0.88909 0.84416 0.83233 0.83389 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.99 42.60 29.54 68.60 2.03 44.63 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.56 -30.84 9.28 25.60 0.24 -30.60 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 15.02 5.43 85.63 0.46 15.49 16 10 N -0.70 -30.83 5.55 -466.79 -2.59 -33.42 16 11 C 0.52 21.71 7.61 87.66 0.67 22.37 16 12 O -0.59 -29.30 13.81 -3.03 -0.04 -29.34 16 13 C -0.18 -5.21 6.02 -11.70 -0.07 -5.28 16 14 H 0.15 3.48 8.12 -2.39 -0.02 3.46 16 15 C -0.11 -2.72 9.96 30.43 0.30 -2.41 16 16 C -0.06 -1.77 2.33 -53.04 -0.12 -1.89 16 17 C -0.07 -2.22 4.96 31.36 0.16 -2.06 16 18 C -0.08 -1.85 6.77 30.58 0.21 -1.64 16 19 C -0.10 -2.46 6.14 -19.54 -0.12 -2.58 16 20 C -0.12 -2.21 10.04 22.29 0.22 -1.99 16 21 C -0.12 -1.94 10.05 22.24 0.22 -1.71 16 22 C -0.13 -2.09 10.05 22.24 0.22 -1.87 16 23 C -0.11 -2.33 9.98 22.30 0.22 -2.11 16 24 C -0.08 -1.91 5.93 -19.73 -0.12 -2.02 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 28 H 0.41 14.86 8.32 -92.71 -0.77 14.08 16 29 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 2.03 7.21 -2.39 -0.02 2.01 16 32 H 0.07 2.15 7.95 -2.38 -0.02 2.13 16 33 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.13 2.24 8.04 -2.91 -0.02 2.21 16 Total: -1.00 -72.15 322.07 2.93 -69.22 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.29 Total: 23.00 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 2.96 Total: -17.64 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.30 Total: -89.87 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.04 Total: -29.34 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -72.15 2.93 -69.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335784494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.254 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds