Wall clock time and date at job start Mon Mar 30 2020 01:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00120 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99679 * 3 2 1 7 7 C 1.40045 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00438 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99846 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00143 * 179.97438 * 9 7 2 12 12 C 1.47428 * 125.64617 * 359.69493 * 11 9 7 13 13 C 1.55132 * 104.72008 * 155.81326 * 12 11 9 14 14 C 1.55160 * 101.48657 * 37.29656 * 13 12 11 15 15 C 1.47025 * 125.64995 * 179.97438 * 11 9 7 16 16 H 1.09002 * 109.88346 * 300.44756 * 15 11 9 17 17 C 1.50704 * 109.87685 * 61.45605 * 15 11 9 18 18 C 1.32564 * 119.99878 * 243.54466 * 17 15 11 19 19 C 1.47814 * 120.00200 * 180.02562 * 18 17 15 20 20 C 1.39529 * 120.13786 * 359.72541 * 19 18 17 21 21 C 1.37976 * 119.85350 * 179.71853 * 20 19 18 22 22 C 1.38346 * 120.14163 * 0.57875 * 21 20 19 23 23 C 1.38340 * 120.28634 * 359.67624 * 22 21 20 24 24 C 1.37974 * 120.13943 * 0.04481 * 23 22 21 25 25 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 26 26 H 1.08996 * 110.36309 * 274.73671 * 12 11 9 27 27 H 1.08994 * 110.37147 * 37.06769 * 12 11 9 28 28 H 1.08995 * 111.19356 * 279.18878 * 13 12 11 29 29 H 1.09002 * 110.90499 * 155.26879 * 13 12 11 30 30 H 1.09001 * 110.71965 * 205.97120 * 14 13 12 31 31 H 1.08997 * 110.87686 * 82.76388 * 14 13 12 32 32 H 1.07999 * 120.00098 * 63.54687 * 17 15 11 33 33 H 1.07999 * 120.00024 * 0.02562 * 18 17 15 34 34 H 1.08001 * 120.07516 * 359.97438 * 20 19 18 35 35 H 1.08006 * 119.93127 * 180.27507 * 21 20 19 36 36 H 1.08004 * 119.85620 * 179.69587 * 22 21 20 37 37 H 1.07999 * 119.93198 * 180.02562 * 23 22 21 38 38 H 1.07999 * 120.07027 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0944 1.6965 1.2124 6 1 3.0944 1.6963 -1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 3.4161 -3.7927 -0.0058 13 6 3.6766 -5.1919 0.6114 14 6 2.4963 -6.0121 0.0269 15 6 1.3428 -4.9872 0.0011 16 1 0.7171 -5.1106 0.8850 17 6 0.5141 -5.1751 -1.2436 18 6 -0.7953 -5.3577 -1.1467 19 6 -1.6081 -5.5426 -2.3673 20 6 -1.0010 -5.5196 -3.6234 21 6 -1.7644 -5.6986 -4.7587 22 6 -3.1308 -5.8886 -4.6541 23 6 -3.7396 -5.9071 -3.4121 24 6 -2.9866 -5.7351 -2.2688 25 1 -0.4850 0.8400 -0.0004 26 1 3.7972 -3.7488 -1.0261 27 1 3.8767 -3.0171 0.6059 28 1 3.6276 -5.1578 1.6997 29 1 4.6338 -5.5924 0.2773 30 1 2.2510 -6.8520 0.6770 31 1 2.7261 -6.3600 -0.9801 32 1 0.9870 -5.1609 -2.2144 33 1 -1.2682 -5.3715 -0.1758 34 1 0.0648 -5.3662 -3.7066 35 1 -1.2951 -5.6854 -5.7313 36 1 -3.7247 -6.0233 -5.5461 37 1 -4.8066 -6.0563 -3.3371 38 1 -3.4629 -5.7502 -1.2997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335815021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:45 Heat of formation + Delta-G solvation = 3.274373 kcal Electronic energy + Delta-G solvation = -20091.573169 eV Core-core repulsion = 17091.864345 eV Total energy + Delta-G solvation = -2999.708824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.03837 -38.47123 -35.64548 -33.88145 -32.46236 -30.73932 -30.39466 -30.05276 -27.03316 -26.07481 -23.21716 -22.44378 -21.71581 -20.64586 -19.44018 -18.54842 -16.89558 -16.42278 -15.66358 -15.35193 -15.01715 -14.48559 -14.25850 -13.71064 -13.20168 -13.15338 -12.92027 -12.73089 -12.68157 -12.53512 -11.87034 -11.65244 -11.27268 -11.19923 -11.17003 -10.84672 -10.73623 -10.57365 -10.47558 -10.32404 -10.25043 -10.10821 -9.73869 -8.82917 -8.72145 -7.83782 -7.44601 -7.17448 -6.16704 -4.62085 1.27791 1.64256 2.97522 3.16013 3.20995 3.22760 4.09720 4.22162 4.57931 4.71480 4.99520 5.05623 5.11383 5.14624 5.26064 5.29044 5.38093 5.63416 5.69781 5.71107 5.82819 5.89393 5.93321 6.05456 6.11687 6.20883 6.21178 6.32354 6.45497 6.60435 6.62307 6.65274 6.71512 6.79068 7.14983 7.25470 7.35734 7.41990 7.45179 8.13164 8.43659 9.03871 9.52929 10.60811 10.80181 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.005610 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.726487 B = 4989.644241 C = 6276.155961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.571 3.429 10 O -0.565 6.565 11 N -0.637 5.637 12 C 0.117 3.883 13 C -0.135 4.135 14 C -0.123 4.123 15 C 0.170 3.830 16 H 0.061 0.939 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.031 4.031 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.115 4.115 25 H 0.268 0.732 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -11.860 -4.459 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.377 3.623 10 O -0.446 6.446 11 N -0.377 5.377 12 C -0.008 4.008 13 C -0.173 4.173 14 C -0.161 4.161 15 C 0.065 3.935 16 H 0.079 0.921 17 C -0.138 4.138 18 C -0.136 4.136 19 C -0.031 4.031 20 C -0.136 4.136 21 C -0.137 4.137 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.433 -11.637 -4.442 12.463 hybrid contribution 0.493 0.973 -0.093 1.095 sum 0.927 -10.664 -4.535 11.625 Atomic orbital electron populations 1.70009 1.06993 1.27332 1.35272 1.25703 0.94607 1.00185 0.92691 0.86456 0.79848 0.81172 0.79427 1.20563 1.19277 1.19310 1.20858 0.93495 0.89047 1.54330 0.91426 1.18030 0.86809 0.81102 0.76378 1.90625 1.13621 1.85687 1.54691 1.48927 1.04583 1.03900 1.80320 1.21953 0.84159 0.95649 0.99030 1.22843 0.97676 0.96236 1.00570 1.22619 0.95073 0.97238 1.01176 1.20252 0.93484 0.85181 0.94583 0.92068 1.23602 0.95181 0.96061 0.98909 1.21467 0.93783 1.02497 0.95859 1.19184 0.93439 0.97130 0.93364 1.21322 1.00086 1.00257 0.91980 1.21023 0.94135 1.00412 0.98162 1.21084 0.94878 1.02020 0.97327 1.21023 0.99493 1.00709 0.92640 1.21269 0.93237 1.00164 0.98598 0.92087 0.93602 0.91168 0.91168 0.91074 0.91124 0.91145 0.87762 0.86681 0.86017 0.86397 0.86597 0.86384 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.32 29.56 -169.99 -5.02 15.30 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -15.36 8.98 -35.63 -0.32 -15.68 16 8 H 0.07 1.77 6.64 -52.49 -0.35 1.42 16 9 C 0.57 16.35 7.57 -12.99 -0.10 16.25 16 10 O -0.57 -18.17 14.82 5.20 0.08 -18.10 16 11 N -0.64 -14.57 3.06 -165.83 -0.51 -15.08 16 12 C 0.12 2.13 6.54 -2.41 -0.02 2.11 16 13 C -0.14 -1.89 7.10 -24.46 -0.17 -2.06 16 14 C -0.12 -1.76 6.47 -24.90 -0.16 -1.92 16 15 C 0.17 3.26 3.21 -68.10 -0.22 3.04 16 16 H 0.06 1.25 7.84 -51.93 -0.41 0.84 16 17 C -0.12 -2.25 7.62 -36.21 -0.28 -2.53 16 18 C -0.12 -2.22 9.49 -37.57 -0.36 -2.58 16 19 C -0.03 -0.55 5.87 -105.02 -0.62 -1.16 16 20 C -0.12 -1.93 9.40 -39.20 -0.37 -2.29 16 21 C -0.12 -1.68 10.03 -39.64 -0.40 -2.08 16 22 C -0.14 -1.79 10.04 -39.50 -0.40 -2.18 16 23 C -0.12 -1.66 10.03 -39.64 -0.40 -2.06 16 24 C -0.11 -1.81 9.79 -39.20 -0.38 -2.19 16 25 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.31 7.13 -51.93 -0.37 0.94 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 32 H 0.10 1.90 6.04 -52.49 -0.32 1.58 16 33 H 0.12 2.20 7.88 -52.49 -0.41 1.79 16 34 H 0.12 1.89 6.17 -52.49 -0.32 1.57 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -34.44 320.83 -9.34 -43.78 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.10 Total: 4.76 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -4.28 Total: -12.95 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.15 Total: -37.62 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.08 Total: -18.10 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.44 -9.34 -43.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335815021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.058 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds