Wall clock time and date at job start Mon Mar 30 2020 02:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86801 * 119.99614 * 2 1 4 4 H 1.48491 * 109.47622 * 89.99776 * 3 2 1 5 5 H 1.48508 * 109.46941 * 209.99590 * 3 2 1 6 6 H 1.48496 * 109.47032 * 329.98937 * 3 2 1 7 7 C 1.39953 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00269 * 174.30991 * 7 2 1 9 9 C 1.41071 * 119.99755 * 354.31175 * 7 2 1 10 10 C 1.40736 * 120.30088 * 334.33129 * 9 7 2 11 11 C 1.36474 * 119.94159 * 179.97438 * 10 9 7 12 12 C 1.38862 * 120.57782 * 359.97438 * 11 10 9 13 13 C 1.38224 * 120.61561 * 0.02562 * 12 11 10 14 14 C 1.38645 * 120.03410 * 359.73388 * 13 12 11 15 15 N 1.39128 * 120.28605 * 180.26212 * 14 13 12 16 16 C 1.34775 * 119.99645 * 335.24736 * 15 14 13 17 17 O 1.21280 * 120.00414 * 354.14799 * 16 15 14 18 18 C 1.50700 * 119.99836 * 174.14801 * 16 15 14 19 19 H 1.09001 * 109.64201 * 60.00099 * 18 16 15 20 20 C 1.53022 * 109.64309 * 299.58027 * 18 16 15 21 21 C 1.50071 * 110.14485 * 190.87990 * 20 18 16 22 22 C 1.29438 * 124.07670 * 17.12775 * 21 20 18 23 23 C 1.50061 * 124.07939 * 359.55590 * 22 21 20 24 24 C 1.52955 * 110.29960 * 16.94617 * 23 22 21 25 25 H 0.97000 * 120.00095 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.02833 * 359.95819 * 10 9 7 27 27 H 1.08002 * 119.70646 * 179.97438 * 11 10 9 28 28 H 1.08002 * 119.69247 * 180.02562 * 12 11 10 29 29 H 1.08005 * 119.97944 * 180.02562 * 13 12 11 30 30 H 0.96998 * 120.00544 * 155.24630 * 15 14 13 31 31 H 1.08993 * 109.35747 * 311.08194 * 20 18 16 32 32 H 1.08992 * 109.35990 * 70.67381 * 20 18 16 33 33 H 1.08001 * 117.95921 * 197.15188 * 21 20 18 34 34 H 1.08010 * 117.96142 * 179.53100 * 22 21 20 35 35 H 1.09004 * 109.36263 * 137.31483 * 23 22 21 36 36 H 1.09001 * 109.36154 * 257.04068 * 23 22 21 37 37 H 1.09000 * 109.80027 * 191.11843 * 24 23 22 38 38 H 1.08999 * 109.43850 * 70.51733 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0466 1.3999 5 1 3.5401 1.4403 -0.7000 6 1 1.4399 2.6526 -0.7002 7 6 2.0084 -1.2120 0.0005 8 1 3.0844 -1.2143 -0.0922 9 6 1.3083 -2.4306 0.1222 10 6 0.0549 -2.4688 0.7612 11 6 -0.6162 -3.6517 0.8743 12 6 -0.0738 -4.8233 0.3631 13 6 1.1554 -4.8128 -0.2689 14 6 1.8569 -3.6244 -0.4024 15 7 3.0921 -3.6069 -1.0424 16 6 3.8413 -4.7261 -1.0919 17 8 3.4900 -5.7182 -0.4893 18 6 5.1157 -4.7448 -1.8960 19 1 5.8011 -3.9882 -1.5140 20 6 4.8008 -4.4585 -3.3658 21 6 6.0068 -4.7327 -4.2158 22 6 7.0216 -5.4370 -3.8290 23 6 7.1384 -6.0698 -2.4734 24 6 5.7684 -6.1294 -1.7958 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3752 -1.5629 1.1618 27 1 -1.5776 -3.6767 1.3658 28 1 -0.6175 -5.7515 0.4602 29 1 1.5674 -5.7301 -0.6631 30 1 3.4141 -2.7892 -1.4530 31 1 3.9780 -5.0957 -3.6898 32 1 4.5110 -3.4136 -3.4763 33 1 6.0296 -4.3162 -5.2120 34 1 7.8349 -5.5784 -4.5256 35 1 7.5345 -7.0798 -2.5789 36 1 7.8150 -5.4790 -1.8559 37 1 5.8865 -6.4038 -0.7476 38 1 5.1448 -6.8659 -2.3025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336382921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:24 Heat of formation + Delta-G solvation = -14.396300 kcal Electronic energy + Delta-G solvation = -20325.879023 eV Core-core repulsion = 17325.403941 eV Total energy + Delta-G solvation = -3000.475082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01406 -38.05878 -36.79605 -33.79161 -33.66344 -31.31299 -30.76996 -29.55182 -28.21061 -25.31254 -23.87748 -22.91378 -21.38189 -20.52714 -19.21288 -17.89493 -17.45550 -16.94063 -16.07503 -15.64385 -15.13842 -14.62061 -14.09872 -14.01970 -13.58967 -13.34987 -13.17970 -12.83416 -12.59395 -12.40953 -12.23608 -12.06679 -11.65809 -11.33383 -11.17112 -11.00014 -10.82030 -10.70263 -10.47841 -10.32310 -10.03316 -9.70319 -9.33967 -9.26010 -9.04493 -8.68982 -7.35323 -6.93507 -6.61072 -4.41485 2.23436 2.60984 2.87511 3.02762 3.04281 3.21628 3.51565 3.86961 3.93098 4.64240 4.69724 4.72116 4.97618 5.23516 5.28388 5.37919 5.49859 5.54210 5.68026 5.73249 5.85009 5.94042 6.00377 6.24172 6.36628 6.37516 6.56007 6.60104 6.63043 6.88641 6.92804 7.07237 7.21415 7.32596 7.65575 7.77168 8.02442 8.12696 8.14938 8.45787 8.59818 8.84483 8.85923 9.06672 10.16763 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.005728 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.426073 B = 4887.342177 C = 6154.231039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.462 4.462 8 H 0.073 0.927 9 C 0.092 3.908 10 C -0.150 4.150 11 C -0.120 4.120 12 C -0.221 4.221 13 C -0.100 4.100 14 C 0.020 3.980 15 N -0.636 5.636 16 C 0.500 3.500 17 O -0.539 6.539 18 C -0.106 4.106 19 H 0.095 0.905 20 C -0.084 4.084 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.092 4.092 24 C -0.098 4.098 25 H 0.279 0.721 26 H 0.136 0.864 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.403 0.597 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.027 -3.673 -6.219 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.187 1.187 6 H -0.203 1.203 7 C -0.493 4.493 8 H 0.092 0.908 9 C 0.088 3.912 10 C -0.170 4.170 11 C -0.139 4.139 12 C -0.241 4.241 13 C -0.120 4.120 14 C -0.074 4.074 15 N -0.277 5.277 16 C 0.287 3.713 17 O -0.418 6.418 18 C -0.127 4.127 19 H 0.113 0.887 20 C -0.121 4.121 21 C -0.167 4.167 22 C -0.178 4.178 23 C -0.129 4.129 24 C -0.136 4.136 25 H 0.090 0.910 26 H 0.154 0.846 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.239 0.761 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.607 -4.197 -5.844 12.002 hybrid contribution 0.472 1.302 -0.310 1.419 sum 10.079 -2.895 -6.153 12.159 Atomic orbital electron populations 1.69764 1.07328 1.28783 1.36798 1.25869 0.94881 1.01156 0.92457 0.86239 0.80155 0.80603 0.79256 1.19414 1.18743 1.20253 1.19326 0.94606 0.90195 1.45130 0.90849 1.17430 0.93262 0.90727 0.89787 1.21280 0.96534 0.97285 1.01862 1.20527 0.98573 0.93628 1.01180 1.20353 0.97639 0.96793 1.09281 1.20749 0.94205 0.96612 1.00474 1.17838 0.87779 0.95730 1.06051 1.42992 1.18026 1.12663 1.54024 1.20504 0.85183 0.83682 0.81981 1.90612 1.71780 1.34326 1.45038 1.21360 0.95612 1.00249 0.95487 0.88732 1.20431 0.96961 1.02526 0.92182 1.22022 0.95515 0.99519 0.99680 1.22058 0.98567 0.99352 0.97789 1.20481 0.97783 1.00544 0.94066 1.21381 0.95167 0.95360 1.01646 0.90961 0.84633 0.89461 0.89322 0.86696 0.76119 0.90242 0.90231 0.87772 0.88114 0.90937 0.90939 0.90636 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.92 10.40 55.55 0.58 -19.34 16 2 C 0.07 1.74 5.36 -17.33 -0.09 1.65 16 3 Si 0.91 17.92 29.56 -169.99 -5.03 12.90 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 6 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -11.53 8.42 -37.87 -0.32 -11.85 16 8 H 0.07 1.72 7.10 -52.49 -0.37 1.35 16 9 C 0.09 2.38 5.62 -106.65 -0.60 1.78 16 10 C -0.15 -3.89 8.66 -39.27 -0.34 -4.23 16 11 C -0.12 -2.90 9.97 -39.99 -0.40 -3.30 16 12 C -0.22 -5.26 10.04 -39.36 -0.39 -5.65 16 13 C -0.10 -2.46 8.71 -39.44 -0.34 -2.80 16 14 C 0.02 0.49 6.46 -83.17 -0.54 -0.05 16 15 N -0.64 -12.99 4.98 -9.48 -0.05 -13.03 16 16 C 0.50 9.46 6.93 -10.99 -0.08 9.39 16 17 O -0.54 -11.99 13.07 5.56 0.07 -11.92 16 18 C -0.11 -1.49 2.57 -91.56 -0.24 -1.72 16 19 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 20 C -0.08 -1.04 5.34 -28.18 -0.15 -1.19 16 21 C -0.15 -1.61 9.80 -35.90 -0.35 -1.96 16 22 C -0.16 -1.62 9.81 -35.90 -0.35 -1.98 16 23 C -0.09 -0.94 6.11 -28.21 -0.17 -1.12 16 24 C -0.10 -1.28 4.70 -26.55 -0.12 -1.40 16 25 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 26 H 0.14 3.61 5.77 -52.49 -0.30 3.31 16 27 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.12 2.80 5.80 -52.48 -0.30 2.49 16 30 H 0.40 7.44 7.48 -40.82 -0.31 7.14 16 31 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.10 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 38 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -28.51 311.12 -9.27 -37.79 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.05 Total: 13.35 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -4.49 Total: -24.43 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.53 Total: -32.37 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.51 -9.27 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336382921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.392 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds