Wall clock time and date at job start Mon Mar 30 2020 01:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 119.99898 * 2 1 4 4 O 1.21584 * 119.99958 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00289 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00223 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47185 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.47160 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99855 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00197 * 180.02562 * 8 7 6 11 11 C 1.47581 * 134.49354 * 180.02562 * 10 8 7 12 12 C 1.53945 * 86.11895 * 155.35947 * 11 10 8 13 13 O 1.42904 * 113.73986 * 269.15696 * 12 11 10 14 14 C 1.50694 * 113.74220 * 137.95139 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47582 * 134.48982 * 359.97438 * 10 8 7 23 23 H 1.09001 * 109.46880 * 299.99526 * 1 2 3 24 24 H 1.09000 * 109.47098 * 60.00569 * 1 2 3 25 25 H 1.09002 * 109.46789 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00641 * 179.97438 * 2 1 3 27 27 H 0.97001 * 119.99917 * 0.02562 * 5 3 2 28 28 H 1.09008 * 109.46723 * 60.00583 * 6 5 3 29 29 H 1.09001 * 109.47303 * 300.00271 * 6 5 3 30 30 H 1.08994 * 109.46740 * 60.00409 * 7 6 5 31 31 H 1.09001 * 109.47279 * 300.00357 * 7 6 5 32 32 H 1.09001 * 113.77016 * 41.05438 * 11 10 8 33 33 H 1.09005 * 113.86980 * 269.67513 * 11 10 8 34 34 H 0.96699 * 113.99284 * 178.07513 * 13 12 11 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.09002 * 113.76615 * 90.34214 * 22 10 8 37 37 H 1.08991 * 113.77327 * 318.94082 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1674 -0.0005 6 6 4.2190 2.4361 -0.0011 7 6 5.7233 2.1566 -0.0010 8 6 6.4768 3.4617 -0.0009 9 8 5.8703 4.5120 -0.0005 10 7 7.8245 3.4618 -0.0013 11 6 8.8587 4.5146 -0.0009 12 6 9.7818 3.4615 0.6384 13 8 9.7524 3.4622 2.0672 14 6 11.1813 3.4619 0.0796 15 1 11.4524 4.1614 -0.6974 16 6 12.1158 2.5692 0.5601 17 7 11.7860 1.7177 1.5066 18 14 13.8504 2.5693 -0.1332 19 1 13.9217 1.6394 -1.2888 20 1 14.2054 3.9407 -0.5787 21 1 14.8031 2.1278 0.9169 22 6 8.8588 2.4090 -0.0014 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9501 -0.8400 0.0004 27 1 3.9716 0.3273 -0.0013 28 1 3.9561 3.0078 0.8890 29 1 3.9553 3.0075 -0.8911 30 1 5.9866 1.5847 -0.8907 31 1 5.9867 1.5853 0.8892 32 1 8.6302 5.3547 0.6548 33 1 9.1716 4.8259 -0.9976 34 1 10.3085 2.7826 2.4722 35 1 12.4433 1.0895 1.8444 36 1 9.1706 2.0996 -0.9990 37 1 8.6305 1.5687 0.6540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347399746.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:35 Heat of formation + Delta-G solvation = -80.881549 kcal Electronic energy + Delta-G solvation = -20531.692370 eV Core-core repulsion = 17117.485008 eV Total energy + Delta-G solvation = -3414.207362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06460 -39.50079 -37.54923 -35.28833 -34.58291 -33.98351 -32.24186 -31.04090 -28.60290 -26.76455 -25.39032 -25.29751 -22.98017 -21.07545 -20.07967 -18.89233 -18.07442 -17.42345 -16.73802 -16.02909 -15.95212 -15.45082 -15.19829 -14.93574 -14.41021 -14.23571 -14.06322 -13.96794 -13.24797 -12.86043 -12.57660 -12.46983 -12.28126 -12.00409 -11.76702 -11.58676 -11.33924 -11.13485 -11.05618 -10.56270 -10.35575 -10.32854 -9.68102 -9.44713 -9.25267 -8.94400 -8.81011 -8.46192 -7.88516 -6.43893 -4.53909 2.55020 3.11143 3.12933 3.13866 3.19967 3.23569 3.52140 4.14053 4.17082 4.79620 4.83323 4.96177 5.00762 5.16126 5.30702 5.51122 5.55517 5.60238 5.91057 5.97389 6.03364 6.15574 6.23686 6.33914 6.38081 6.45952 6.57833 6.63117 6.74892 7.05663 7.59085 7.78040 7.86445 8.43827 8.49373 8.49749 8.69151 9.17438 9.41812 10.62736 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.038931 B = 0.003226 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.050573 B = 8677.276097 C = 9053.742808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.754 5.754 3 C 0.701 3.299 4 O -0.588 6.588 5 N -0.746 5.746 6 C 0.155 3.845 7 C -0.146 4.146 8 C 0.532 3.468 9 O -0.561 6.561 10 N -0.632 5.632 11 C 0.112 3.888 12 C 0.238 3.762 13 O -0.573 6.573 14 C -0.536 4.536 15 H 0.071 0.929 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.278 1.278 20 H -0.271 1.271 21 H -0.283 1.283 22 C 0.076 3.924 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.397 0.603 27 H 0.395 0.605 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.392 0.608 35 H 0.273 0.727 36 H 0.082 0.918 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 -9.064 -3.147 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.410 5.410 3 C 0.400 3.600 4 O -0.465 6.465 5 N -0.401 5.401 6 C 0.031 3.969 7 C -0.186 4.186 8 C 0.320 3.680 9 O -0.441 6.441 10 N -0.365 5.365 11 C -0.010 4.010 12 C 0.196 3.804 13 O -0.385 6.385 14 C -0.574 4.574 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.195 1.195 21 H -0.209 1.209 22 C -0.047 4.047 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.230 0.770 27 H 0.229 0.771 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.033 -7.164 -3.112 15.195 hybrid contribution 1.792 -1.615 -0.291 2.430 sum -11.241 -8.779 -3.403 14.663 Atomic orbital electron populations 1.21372 0.78257 1.01789 1.02298 1.44922 1.07731 1.07138 1.81218 1.15945 0.81772 0.84254 0.77980 1.90952 1.67841 1.30303 1.57391 1.45139 1.04701 1.10022 1.80287 1.20902 0.88321 0.83788 1.03920 1.21690 0.94603 0.97521 1.04805 1.19803 0.81091 0.90326 0.76734 1.90680 1.67448 1.33719 1.52296 1.50160 1.02992 1.12802 1.70559 1.23464 0.83984 0.93478 1.00105 1.19837 0.91583 0.88576 0.80359 1.86066 1.72224 1.61310 1.18912 1.21520 0.95087 1.19196 1.21626 0.91036 1.25072 0.99595 0.94099 0.94298 1.69317 1.35834 1.20924 1.27872 0.86323 0.82753 0.78706 0.78690 1.20333 1.19532 1.20902 1.24330 0.85383 0.93891 1.01075 0.92416 0.92429 0.90778 0.77031 0.77119 0.90631 0.90722 0.88732 0.88509 0.91092 0.89622 0.75197 0.91649 0.89960 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.81 10.70 59.85 0.64 1.45 16 2 N -0.75 -6.63 5.72 -72.07 -0.41 -7.04 16 3 C 0.70 9.28 8.57 -86.92 -0.74 8.53 16 4 O -0.59 -10.65 16.34 5.29 0.09 -10.56 16 5 N -0.75 -8.47 5.56 -65.22 -0.36 -8.83 16 6 C 0.15 2.23 4.96 -4.04 -0.02 2.21 16 7 C -0.15 -2.02 5.56 -27.88 -0.16 -2.18 16 8 C 0.53 10.26 8.06 -10.99 -0.09 10.17 16 9 O -0.56 -12.67 16.71 5.55 0.09 -12.58 16 10 N -0.63 -12.74 3.61 -178.32 -0.64 -13.39 16 11 C 0.11 2.38 8.23 -2.97 -0.02 2.35 16 12 C 0.24 5.51 1.44 -90.86 -0.13 5.38 16 13 O -0.57 -14.33 13.48 -35.23 -0.48 -14.80 16 14 C -0.54 -13.03 8.62 -34.44 -0.30 -13.33 16 15 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16 17 N -0.90 -21.99 11.09 55.43 0.61 -21.37 16 18 Si 0.91 18.94 29.54 -169.99 -5.02 13.92 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.08 1.53 8.00 -2.99 -0.02 1.50 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.40 2.13 8.84 -40.82 -0.36 1.77 16 27 H 0.40 3.08 8.49 -40.82 -0.35 2.73 16 28 H 0.08 1.25 8.10 -51.92 -0.42 0.83 16 29 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 34 H 0.39 9.88 6.46 45.56 0.29 10.17 16 35 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 36 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 322.19 15.07 4.86 4.86 Total: -1.00 -31.85 322.19 -6.80 -38.65 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -4.60 Total: 13.42 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: -0.94 Total: 17.73 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.80 Total: -50.63 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.30 Total: -37.94 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.85 -6.80 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347399746.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.229 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds