Wall clock time and date at job start Mon Mar 30 2020 01:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 119.99898 * 2 1 4 4 O 1.21584 * 119.99958 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00289 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00223 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47185 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.47160 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99855 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00197 * 180.02562 * 8 7 6 11 11 C 1.47581 * 134.49354 * 180.02562 * 10 8 7 12 12 C 1.53945 * 86.11895 * 155.35947 * 11 10 8 13 13 O 1.42904 * 113.73986 * 269.15696 * 12 11 10 14 14 C 1.50694 * 113.74220 * 137.95139 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47582 * 134.48982 * 359.97438 * 10 8 7 23 23 H 1.09001 * 109.46880 * 299.99526 * 1 2 3 24 24 H 1.09000 * 109.47098 * 60.00569 * 1 2 3 25 25 H 1.09002 * 109.46789 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00641 * 179.97438 * 2 1 3 27 27 H 0.97001 * 119.99917 * 0.02562 * 5 3 2 28 28 H 1.09008 * 109.46723 * 60.00583 * 6 5 3 29 29 H 1.09001 * 109.47303 * 300.00271 * 6 5 3 30 30 H 1.08994 * 109.46740 * 60.00409 * 7 6 5 31 31 H 1.09001 * 109.47279 * 300.00357 * 7 6 5 32 32 H 1.09001 * 113.77016 * 41.05438 * 11 10 8 33 33 H 1.09005 * 113.86980 * 269.67513 * 11 10 8 34 34 H 0.96699 * 113.99284 * 178.07513 * 13 12 11 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.09002 * 113.76615 * 90.34214 * 22 10 8 37 37 H 1.08991 * 113.77327 * 318.94082 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1674 -0.0005 6 6 4.2190 2.4361 -0.0011 7 6 5.7233 2.1566 -0.0010 8 6 6.4768 3.4617 -0.0009 9 8 5.8703 4.5120 -0.0005 10 7 7.8245 3.4618 -0.0013 11 6 8.8587 4.5146 -0.0009 12 6 9.7818 3.4615 0.6384 13 8 9.7524 3.4622 2.0672 14 6 11.1813 3.4619 0.0796 15 1 11.4524 4.1614 -0.6974 16 6 12.1158 2.5692 0.5601 17 7 11.7860 1.7177 1.5066 18 14 13.8504 2.5693 -0.1332 19 1 13.9217 1.6394 -1.2888 20 1 14.2054 3.9407 -0.5787 21 1 14.8031 2.1278 0.9169 22 6 8.8588 2.4090 -0.0014 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9501 -0.8400 0.0004 27 1 3.9716 0.3273 -0.0013 28 1 3.9561 3.0078 0.8890 29 1 3.9553 3.0075 -0.8911 30 1 5.9866 1.5847 -0.8907 31 1 5.9867 1.5853 0.8892 32 1 8.6302 5.3547 0.6548 33 1 9.1716 4.8259 -0.9976 34 1 10.3085 2.7826 2.4722 35 1 12.4433 1.0895 1.8444 36 1 9.1706 2.0996 -0.9990 37 1 8.6305 1.5687 0.6540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347399746.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:34 Heat of formation + Delta-G solvation = -108.398114 kcal Electronic energy + Delta-G solvation = -20532.885578 eV Core-core repulsion = 17117.485008 eV Total energy + Delta-G solvation = -3415.400570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30868 -40.90503 -39.18232 -36.37192 -35.79154 -35.57326 -34.10688 -32.27060 -30.17973 -27.78932 -26.96997 -26.87276 -24.20771 -22.09339 -21.70759 -20.10951 -19.54149 -19.09885 -18.09706 -17.22333 -17.18371 -17.11355 -16.51738 -16.40490 -15.91084 -15.42832 -15.37547 -15.13257 -14.64697 -14.34265 -14.01493 -13.80627 -13.63465 -13.37445 -13.02482 -12.94893 -12.82026 -12.72616 -12.51886 -12.24186 -12.17527 -11.55088 -11.37623 -10.94864 -10.61887 -10.47177 -10.22187 -9.82851 -9.55529 -8.25067 -6.41122 1.47594 1.51762 1.55788 1.60095 1.63560 2.08769 2.09798 2.42462 2.97916 3.27888 3.60286 3.69045 3.89113 4.02601 4.21890 4.42218 4.47103 4.49788 4.62630 4.66971 4.80326 4.85077 4.86128 4.94715 4.97139 5.00256 5.27914 5.36786 5.48279 5.75313 5.95840 5.98339 6.63904 6.87032 7.09192 7.13037 7.32464 7.50414 7.55142 8.80702 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.038931 B = 0.003226 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.050573 B = 8677.276097 C = 9053.742808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.735 5.735 3 C 0.693 3.307 4 O -0.643 6.643 5 N -0.729 5.729 6 C 0.166 3.834 7 C -0.127 4.127 8 C 0.523 3.477 9 O -0.601 6.601 10 N -0.633 5.633 11 C 0.108 3.892 12 C 0.216 3.784 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.070 0.930 16 C 0.035 3.965 17 N -0.915 5.915 18 Si 0.966 3.034 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.285 1.285 22 C 0.094 3.906 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.117 0.883 26 H 0.417 0.583 27 H 0.417 0.583 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.388 0.612 35 H 0.276 0.724 36 H 0.097 0.903 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -11.531 -3.936 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.392 5.392 3 C 0.392 3.608 4 O -0.525 6.525 5 N -0.386 5.386 6 C 0.041 3.959 7 C -0.167 4.167 8 C 0.314 3.686 9 O -0.484 6.484 10 N -0.366 5.366 11 C -0.015 4.015 12 C 0.175 3.825 13 O -0.400 6.400 14 C -0.593 4.593 15 H 0.088 0.912 16 C -0.166 4.166 17 N -0.555 5.555 18 Si 0.792 3.208 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.210 1.210 22 C -0.029 4.029 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.135 0.865 26 H 0.254 0.746 27 H 0.254 0.746 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.821 -9.722 -3.908 16.558 hybrid contribution 1.701 -0.832 -0.016 1.893 sum -11.121 -10.553 -3.924 15.825 Atomic orbital electron populations 1.21552 0.77280 1.04214 1.01108 1.44805 1.08308 1.06602 1.79439 1.16253 0.82117 0.84654 0.77767 1.90918 1.69004 1.32675 1.59882 1.44801 1.04213 1.09922 1.79695 1.20544 0.89045 0.84719 1.01639 1.21605 0.92958 0.94763 1.07377 1.20731 0.80670 0.91795 0.75381 1.90666 1.68012 1.35788 1.53892 1.50183 1.03394 1.12288 1.70714 1.23464 0.84463 0.93082 1.00471 1.20133 0.92115 0.90734 0.79518 1.86055 1.72167 1.61437 1.20361 1.21726 0.96097 1.19511 1.21982 0.91206 1.25697 1.02519 0.93817 0.94573 1.69368 1.36730 1.21128 1.28288 0.85422 0.78872 0.78412 0.78102 1.19536 1.19896 1.21016 1.24131 0.84044 0.93134 1.01552 0.93734 0.93608 0.86480 0.74629 0.74582 0.93430 0.92837 0.85345 0.86350 0.92718 0.88063 0.75648 0.91419 0.88516 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.35 10.70 127.77 1.37 2.72 16 2 N -0.73 -11.25 5.72 -500.19 -2.86 -14.11 16 3 C 0.69 17.60 8.57 179.05 1.53 19.14 16 4 O -0.64 -23.68 16.34 -3.98 -0.07 -23.74 16 5 N -0.73 -15.17 5.56 -478.52 -2.66 -17.83 16 6 C 0.17 4.66 4.96 86.38 0.43 5.09 16 7 C -0.13 -3.23 5.56 29.85 0.17 -3.06 16 8 C 0.52 19.73 8.06 87.66 0.71 20.44 16 9 O -0.60 -27.49 16.71 -3.04 -0.05 -27.54 16 10 N -0.63 -24.85 3.61 -840.31 -3.03 -27.88 16 11 C 0.11 4.59 8.23 86.48 0.71 5.30 16 12 C 0.22 9.88 1.44 -10.89 -0.02 9.87 16 13 O -0.59 -29.50 13.48 -148.98 -2.01 -31.51 16 14 C -0.56 -26.59 8.62 25.60 0.22 -26.37 16 15 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 16 C 0.03 1.63 5.40 84.66 0.46 2.09 16 17 N -0.91 -43.85 11.09 21.45 0.24 -43.61 16 18 Si 0.97 37.95 29.54 68.60 2.03 39.98 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 21 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 22 C 0.09 3.59 8.00 86.47 0.69 4.28 16 23 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 26 H 0.42 3.02 8.84 -92.71 -0.82 2.20 16 27 H 0.42 5.05 8.49 -92.71 -0.79 4.26 16 28 H 0.05 1.61 8.10 -2.38 -0.02 1.59 16 29 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 30 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.10 3.92 8.09 -2.38 -0.02 3.90 16 34 H 0.39 19.63 6.46 -74.06 -0.48 19.15 16 35 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 36 H 0.10 3.43 8.09 -2.39 -0.02 3.42 16 37 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -70.29 322.19 -3.11 -73.40 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.97 Total: 33.36 kcal Atomic # 6 Polarization: 33.21 SS G_CDS: 6.27 Total: 39.48 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -8.31 Total: -103.44 kcal Atomic # 8 Polarization: -80.66 SS G_CDS: -2.12 Total: -82.79 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -70.29 -3.11 -73.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347399746.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.996 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds