Wall clock time and date at job start Mon Mar 30 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00005 * 2 1 4 4 H 1.48497 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47405 * 299.99754 * 3 2 1 6 6 H 1.48506 * 109.47198 * 59.99697 * 3 2 1 7 7 C 1.37881 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00071 * 173.55588 * 7 2 1 9 9 C 1.50697 * 119.99761 * 353.55929 * 7 2 1 10 10 C 1.52996 * 115.55230 * 85.40473 * 9 7 2 11 11 N 1.46500 * 109.47454 * 65.13722 * 10 9 7 12 12 C 1.34778 * 120.00309 * 178.27270 * 11 10 9 13 13 O 1.21692 * 119.99536 * 0.02562 * 12 11 10 14 14 C 1.46426 * 120.00009 * 180.02562 * 12 11 10 15 15 C 1.34810 * 119.99942 * 180.02562 * 14 12 11 16 16 C 1.47205 * 119.99882 * 179.97438 * 15 14 12 17 17 C 1.39834 * 120.17333 * 359.72370 * 16 15 14 18 18 C 1.37894 * 119.82635 * 179.72574 * 17 16 15 19 19 C 1.38402 * 120.16928 * 0.57286 * 18 17 16 20 20 C 1.38393 * 120.34544 * 359.70256 * 19 18 17 21 21 C 1.37895 * 120.17360 * 359.97438 * 20 19 18 22 22 C 1.53002 * 117.49363 * 231.07124 * 9 7 2 23 23 C 1.52992 * 117.50005 * 299.72723 * 9 7 2 24 24 H 0.97001 * 120.00049 * 5.06109 * 1 2 3 25 25 H 1.09000 * 109.47024 * 305.14148 * 10 9 7 26 26 H 1.09002 * 109.47346 * 185.14007 * 10 9 7 27 27 H 0.97008 * 119.99728 * 358.27247 * 11 10 9 28 28 H 1.08001 * 120.00111 * 359.97438 * 14 12 11 29 29 H 1.08004 * 119.99839 * 359.97438 * 15 14 12 30 30 H 1.08005 * 120.08493 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.90995 * 180.29842 * 18 17 16 32 32 H 1.08000 * 119.82346 * 179.72330 * 19 18 17 33 33 H 1.08003 * 119.91751 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.08875 * 180.02562 * 21 20 19 35 35 H 1.09011 * 117.49673 * 215.00433 * 22 9 7 36 36 H 1.08998 * 117.50245 * 0.02562 * 22 9 7 37 37 H 1.09007 * 117.50067 * 359.97438 * 23 9 7 38 38 H 1.08998 * 117.50396 * 144.97540 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0795 -1.1971 -0.1044 9 6 1.2582 -2.4950 0.1475 10 6 0.7022 -3.0869 -1.1491 11 7 1.8112 -3.4600 -2.0306 12 6 1.5601 -4.0374 -3.2223 13 8 0.4120 -4.2485 -3.5661 14 6 2.6686 -4.4108 -4.1031 15 6 2.4174 -4.9879 -5.2952 16 6 3.5318 -5.3627 -6.1809 17 6 4.8522 -5.1165 -5.7919 18 6 5.8909 -5.4757 -6.6247 19 6 5.6288 -6.0676 -7.8480 20 6 4.3245 -6.3093 -8.2426 21 6 3.2752 -5.9619 -7.4181 22 6 1.7471 -3.4728 1.2179 23 6 0.4418 -2.7006 1.4250 24 1 -0.4850 0.8368 -0.0741 25 1 0.0755 -2.3470 -1.6469 26 1 0.1076 -3.9711 -0.9192 27 1 2.7264 -3.2913 -1.7567 28 1 3.6875 -4.2230 -3.7980 29 1 1.3984 -5.1753 -5.6004 30 1 5.0580 -4.6499 -4.8398 31 1 6.9114 -5.2906 -6.3234 32 1 6.4464 -6.3426 -8.4978 33 1 4.1279 -6.7720 -9.1985 34 1 2.2580 -6.1516 -7.7272 35 1 1.6727 -4.5379 0.9983 36 1 2.6083 -3.1750 1.8160 37 1 0.4449 -1.8951 2.1595 38 1 -0.4916 -3.2572 1.3417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493041321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:55 Heat of formation + Delta-G solvation = 20.744134 kcal Electronic energy + Delta-G solvation = -19205.339776 eV Core-core repulsion = 16206.388498 eV Total energy + Delta-G solvation = -2998.951278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.49037 -38.84581 -36.71151 -34.00583 -33.25819 -31.98450 -31.18163 -29.71772 -26.57049 -25.35418 -23.70099 -22.70182 -21.26994 -20.74878 -19.55296 -18.80992 -17.43519 -16.66938 -16.05792 -15.32665 -15.23655 -14.75513 -14.51471 -14.37785 -13.93226 -13.59187 -13.52950 -13.13941 -12.98866 -12.66426 -12.05750 -11.81940 -11.60473 -11.39517 -11.07043 -11.03178 -10.93158 -10.53453 -10.34931 -10.28120 -9.69168 -9.38175 -9.15653 -8.97753 -8.51851 -8.41629 -8.24388 -8.02727 -6.09332 -4.18170 0.54083 1.21726 2.06624 3.24119 3.33253 3.35153 3.60402 3.87086 3.94029 4.34282 4.63343 4.70546 4.76294 4.91256 5.18554 5.21776 5.23741 5.25390 5.33256 5.55049 5.76304 5.82936 6.01238 6.05160 6.19164 6.29794 6.32394 6.41921 6.48864 6.55845 6.60485 6.68298 6.77559 6.88753 7.08288 7.27856 7.42054 7.47546 7.80130 8.30304 8.32484 8.82473 8.88227 9.48908 10.98537 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.003609 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.304871 B = 7756.549786 C = 8291.021242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.027 3.973 10 C 0.162 3.838 11 N -0.695 5.695 12 C 0.532 3.468 13 O -0.562 6.562 14 C -0.186 4.186 15 C -0.047 4.047 16 C -0.063 4.063 17 C -0.106 4.106 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.102 4.102 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.261 0.739 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.401 0.599 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 -10.638 -11.803 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.026 3.974 10 C 0.039 3.961 11 N -0.342 5.342 12 C 0.320 3.680 13 O -0.443 6.443 14 C -0.207 4.207 15 C -0.067 4.067 16 C -0.063 4.063 17 C -0.124 4.124 18 C -0.139 4.139 19 C -0.136 4.136 20 C -0.141 4.141 21 C -0.120 4.120 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.235 0.765 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.894 -10.626 -11.921 18.279 hybrid contribution 0.857 1.120 0.178 1.422 sum 9.751 -9.506 -11.743 17.982 Atomic orbital electron populations 1.69986 1.05905 1.26854 1.48230 1.24995 0.94809 0.98990 0.94269 0.86573 0.80173 0.83817 0.77653 1.19699 1.21018 1.20936 1.20383 0.92874 0.88603 1.52010 0.92113 1.19038 0.98640 0.93961 0.85740 1.21015 0.87340 0.96973 0.90753 1.45905 1.11543 1.59203 1.17560 1.18278 0.88880 0.78788 0.82100 1.90763 1.22516 1.56325 1.74730 1.23148 0.99196 1.02357 0.95961 1.22286 0.98151 0.93801 0.92467 1.19121 0.93024 0.99428 0.94707 1.21500 0.91907 0.99020 0.99977 1.21112 0.99158 0.99131 0.94536 1.21268 0.96802 0.99008 0.96567 1.21092 0.92734 1.00533 0.99789 1.21397 0.99538 0.97712 0.93310 1.23028 0.98686 0.95671 1.07416 1.22491 0.92281 1.01077 1.02748 0.92869 0.90859 0.94380 0.76490 0.85549 0.84711 0.85302 0.85813 0.86113 0.85897 0.85511 0.91632 0.90333 0.89809 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.26 12.91 55.43 0.72 -23.54 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.50 -12.84 8.63 -34.44 -0.30 -13.14 16 8 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 9 C 0.03 0.63 1.38 -155.67 -0.21 0.42 16 10 C 0.16 3.71 5.50 -4.04 -0.02 3.69 16 11 N -0.69 -13.64 5.47 -61.70 -0.34 -13.98 16 12 C 0.53 10.18 7.74 -12.96 -0.10 10.08 16 13 O -0.56 -12.73 16.23 5.20 0.08 -12.65 16 14 C -0.19 -2.71 9.41 -37.50 -0.35 -3.07 16 15 C -0.05 -0.64 9.46 -37.16 -0.35 -0.99 16 16 C -0.06 -0.73 5.87 -105.06 -0.62 -1.35 16 17 C -0.11 -1.12 9.41 -39.11 -0.37 -1.49 16 18 C -0.12 -1.11 10.03 -39.65 -0.40 -1.51 16 19 C -0.12 -1.01 10.04 -39.46 -0.40 -1.40 16 20 C -0.12 -1.09 10.03 -39.65 -0.40 -1.48 16 21 C -0.10 -1.03 9.80 -39.11 -0.38 -1.42 16 22 C -0.21 -4.36 9.96 -26.70 -0.27 -4.62 16 23 C -0.15 -3.37 9.42 -26.70 -0.25 -3.62 16 24 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 25 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 26 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.40 7.09 8.34 -40.82 -0.34 6.75 16 28 H 0.13 1.50 6.07 -52.49 -0.32 1.18 16 29 H 0.14 1.89 7.52 -52.48 -0.39 1.49 16 30 H 0.13 1.21 6.17 -52.48 -0.32 0.89 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 38 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -30.19 332.82 -9.20 -39.39 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.15 Total: 8.32 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -4.51 Total: -18.05 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.38 Total: -37.52 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.19 -9.20 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493041321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.137 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds