Wall clock time and date at job start Mon Mar 30 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00105 * 2 1 4 4 C 1.52998 * 109.47043 * 180.02562 * 3 2 1 5 5 N 1.46500 * 115.55440 * 56.95930 * 4 3 2 6 6 C 1.34778 * 119.99779 * 65.44154 * 5 4 3 7 7 O 1.21580 * 120.00130 * 5.04688 * 6 5 4 8 8 N 1.34779 * 119.99780 * 185.04979 * 6 5 4 9 9 C 1.46496 * 119.99712 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47104 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99838 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00277 * 179.97438 * 10 9 8 13 13 C 1.37093 * 120.00126 * 179.97438 * 12 10 9 14 14 H 1.08005 * 120.00178 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00320 * 180.02562 * 13 12 10 16 16 N 1.31403 * 120.00178 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99627 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47566 * 89.99771 * 17 15 13 19 19 H 1.48504 * 109.47029 * 210.00116 * 17 15 13 20 20 H 1.48507 * 109.47126 * 329.99361 * 17 15 13 21 21 C 1.53001 * 117.49503 * 271.29186 * 4 3 2 22 22 C 1.52997 * 117.49730 * 202.63424 * 4 3 2 23 23 H 1.08999 * 109.47406 * 59.99740 * 1 2 3 24 24 H 1.09007 * 109.47198 * 300.00106 * 1 2 3 25 25 H 1.09000 * 109.47534 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46873 * 300.00101 * 3 2 1 27 27 H 1.09001 * 109.47401 * 60.00216 * 3 2 1 28 28 H 0.96995 * 119.99975 * 245.44220 * 5 4 3 29 29 H 0.96999 * 120.00191 * 0.02562 * 8 6 5 30 30 H 1.09002 * 109.47153 * 299.99678 * 9 8 6 31 31 H 1.08992 * 109.47371 * 60.00027 * 9 8 6 32 32 H 0.96999 * 120.00008 * 0.02562 * 12 10 9 33 33 H 0.97002 * 120.00223 * 180.02562 * 16 15 13 34 34 H 1.08999 * 117.50220 * 0.02562 * 21 4 3 35 35 H 1.09003 * 117.49929 * 145.02234 * 21 4 3 36 36 H 1.09005 * 117.49952 * 214.97399 * 22 4 3 37 37 H 1.08994 * 117.50081 * 359.97132 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1080 0.4165 -1.1090 6 6 3.9961 0.8713 -2.3727 7 8 3.5018 1.9617 -2.5848 8 7 4.4320 0.1174 -3.4014 9 6 4.3098 0.6115 -4.7750 10 6 4.8675 -0.4132 -5.7290 11 8 5.3228 -1.4537 -5.3032 12 7 4.8605 -0.1734 -7.0553 13 6 5.3683 -1.1054 -7.9230 14 1 5.7744 -2.0316 -7.5438 15 6 5.3615 -0.8581 -9.2903 16 7 5.8488 -1.7512 -10.1220 17 14 4.6611 0.7447 -9.9460 18 1 5.7393 1.7632 -10.0186 19 1 4.0992 0.5211 -11.3023 20 1 3.5878 1.2238 -9.0384 21 6 4.2377 1.0980 1.3559 22 6 4.3388 2.3774 0.5215 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 -0.8900 27 1 1.6887 1.8464 0.8900 28 1 4.5677 -0.4194 -0.9333 29 1 4.8260 -0.7527 -3.2322 30 1 3.2592 0.7889 -5.0052 31 1 4.8664 1.5431 -4.8769 32 1 4.4968 0.6588 -7.3958 33 1 5.8444 -1.5784 -11.0765 34 1 3.6132 1.1268 2.2488 35 1 5.1260 0.4699 1.4236 36 1 5.2936 2.5904 0.0407 37 1 3.7808 3.2483 0.8651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563946265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:06 Heat of formation + Delta-G solvation = -75.419314 kcal Electronic energy + Delta-G solvation = -20578.427495 eV Core-core repulsion = 17164.456994 eV Total energy + Delta-G solvation = -3413.970502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19065 -38.74759 -37.98663 -36.80497 -34.43125 -33.69574 -32.62657 -31.76620 -28.39937 -27.59284 -25.70240 -24.34510 -22.79012 -21.49167 -19.96297 -19.54621 -18.74358 -18.02631 -17.03834 -16.25952 -15.96164 -15.63479 -15.48340 -15.23066 -14.88536 -14.63091 -14.16620 -13.99003 -13.84852 -13.12062 -12.63180 -12.50045 -12.45362 -12.14298 -12.11759 -11.80264 -11.65191 -11.22979 -11.06892 -10.62886 -10.47160 -10.09063 -10.04355 -9.68255 -9.67646 -9.14078 -8.74392 -8.65476 -8.28717 -6.39296 -3.91751 2.67449 3.01016 3.05605 3.13569 3.23126 3.37102 3.59959 3.77049 4.04888 4.23944 4.48159 4.62925 4.67217 4.82470 5.05563 5.15875 5.17444 5.21336 5.36169 5.37358 5.49598 5.59685 5.66396 5.70327 5.82426 5.85141 5.88416 6.56849 6.68559 6.97244 7.08245 7.46815 8.02210 8.22826 8.46403 8.78904 8.83548 9.31648 9.65741 10.72974 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.003482 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.871929 B = 8039.344742 C = 8183.447626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.089 3.911 4 C 0.127 3.873 5 N -0.711 5.711 6 C 0.711 3.289 7 O -0.595 6.595 8 N -0.725 5.725 9 C 0.128 3.872 10 C 0.439 3.561 11 O -0.579 6.579 12 N -0.577 5.577 13 C -0.310 4.310 14 H 0.121 0.879 15 C 0.045 3.955 16 N -0.875 5.875 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.267 1.267 21 C -0.167 4.167 22 C -0.162 4.162 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.400 0.600 29 H 0.408 0.592 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.374 0.626 33 H 0.275 0.725 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 8.117 20.593 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.011 3.989 4 C 0.038 3.962 5 N -0.366 5.366 6 C 0.411 3.589 7 O -0.474 6.474 8 N -0.382 5.382 9 C -0.001 4.001 10 C 0.225 3.775 11 O -0.463 6.463 12 N -0.215 5.215 13 C -0.438 4.438 14 H 0.139 0.861 15 C -0.159 4.159 16 N -0.514 5.514 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.192 1.192 21 C -0.205 4.205 22 C -0.201 4.201 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.245 0.755 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.208 0.792 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.308 8.155 20.383 23.138 hybrid contribution -0.339 0.596 -0.672 0.960 sum -7.647 8.751 19.711 22.882 Atomic orbital electron populations 1.22731 0.81113 1.02741 0.99849 1.87893 1.19451 1.27462 1.95410 1.22246 0.90326 0.85145 1.01157 1.20097 0.90041 0.99053 0.87010 1.44215 1.61933 1.26623 1.03809 1.15784 0.79018 0.83887 0.80244 1.90872 1.51336 1.21029 1.84151 1.44736 1.66345 1.22545 1.04602 1.20781 1.01913 0.96800 0.80616 1.19677 0.85796 0.88877 0.83165 1.90538 1.51190 1.27787 1.76771 1.42111 1.54985 1.18871 1.05509 1.19442 1.36942 1.00567 0.86876 0.86102 1.25059 0.97228 0.97932 0.95692 1.69615 1.44096 1.34215 1.03505 0.86670 0.79718 0.83399 0.79705 1.19397 1.20005 1.19206 1.23362 1.02702 1.00910 0.93499 1.23341 1.02208 0.92361 1.02165 0.94032 0.94292 0.89615 0.91366 0.92506 0.76468 0.75467 0.89975 0.89937 0.79243 0.91407 0.87652 0.88003 0.87873 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.69 10.67 -35.23 -0.38 -5.07 16 3 C 0.09 1.01 5.73 37.16 0.21 1.22 16 4 C 0.13 1.42 1.92 -131.82 -0.25 1.17 16 5 N -0.71 -9.08 5.42 -52.42 -0.28 -9.36 16 6 C 0.71 11.52 8.42 -86.91 -0.73 10.79 16 7 O -0.60 -11.19 15.46 5.30 0.08 -11.11 16 8 N -0.72 -12.09 5.53 -66.42 -0.37 -12.46 16 9 C 0.13 2.28 6.15 -5.20 -0.03 2.25 16 10 C 0.44 9.80 7.85 -10.98 -0.09 9.71 16 11 O -0.58 -14.79 15.24 5.54 0.08 -14.71 16 12 N -0.58 -13.56 5.09 -10.96 -0.06 -13.61 16 13 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 14 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 15 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 16 N -0.88 -25.13 13.96 55.50 0.77 -24.36 16 17 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 21 C -0.17 -1.34 10.16 -26.69 -0.27 -1.61 16 22 C -0.16 -1.53 10.18 -26.69 -0.27 -1.80 16 23 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.92 7.30 -51.93 -0.38 0.54 16 27 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.40 4.32 8.85 -40.82 -0.36 3.96 16 29 H 0.41 6.70 7.46 -40.82 -0.30 6.40 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 33 H 0.28 7.28 8.31 -40.82 -0.34 6.95 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -33.67 323.38 -5.61 -39.28 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -5.06 Total: 16.62 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: -0.57 Total: 15.49 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.07 Total: -59.80 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.21 Total: -30.88 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.67 -5.61 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563946265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.136 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds