Wall clock time and date at job start Mon Mar 30 2020 01:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 120.00108 * 2 1 4 4 H 1.48499 * 109.47177 * 240.00061 * 3 2 1 5 5 H 1.48500 * 109.46746 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47243 * 120.00098 * 3 2 1 7 7 C 1.37881 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.35351 * 126.74701 * 124.95278 * 10 9 7 12 12 N 1.35322 * 106.16806 * 180.02562 * 11 10 9 13 13 C 1.46502 * 125.86299 * 180.26356 * 12 11 10 14 14 C 1.53002 * 109.46837 * 124.71412 * 13 12 11 15 15 H 1.08992 * 110.02176 * 305.70430 * 14 13 12 16 16 C 1.54263 * 110.03151 * 184.30439 * 14 13 12 17 17 C 1.54893 * 104.19920 * 217.10609 * 16 14 13 18 18 C 1.54889 * 102.74319 * 37.94602 * 17 16 14 19 19 C 1.53882 * 110.02876 * 67.09286 * 14 13 12 20 20 F 1.39905 * 110.03008 * 238.56675 * 19 14 13 21 21 F 1.39898 * 110.03033 * 359.97438 * 19 14 13 22 22 N 1.28714 * 108.26464 * 0.02562 * 12 11 10 23 23 N 1.28629 * 110.17964 * 359.97438 * 22 12 11 24 24 H 0.96998 * 120.00468 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46927 * 60.00657 * 9 7 2 26 26 H 1.08999 * 109.47158 * 300.00892 * 9 7 2 27 27 H 1.07991 * 126.91591 * 0.05646 * 11 10 9 28 28 H 1.08994 * 109.47171 * 244.71843 * 13 12 11 29 29 H 1.09002 * 109.47125 * 4.71984 * 13 12 11 30 30 H 1.08995 * 110.49152 * 335.79169 * 16 14 13 31 31 H 1.09008 * 110.48425 * 98.43330 * 16 14 13 32 32 H 1.09001 * 110.75423 * 156.26267 * 17 16 14 33 33 H 1.08993 * 110.75582 * 279.44784 * 17 16 14 34 34 H 1.09000 * 110.48460 * 80.73909 * 18 17 16 35 35 H 1.09000 * 110.48308 * 203.37694 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.2844 -4.6638 0.8884 12 7 3.3152 -5.4493 0.4989 13 6 3.7526 -6.6815 1.1596 14 6 3.7624 -7.8278 0.1462 15 1 2.7875 -7.9094 -0.3342 16 6 4.1170 -9.1533 0.8511 17 6 4.9910 -9.9099 -0.1798 18 6 5.8333 -8.7744 -0.8124 19 6 4.8530 -7.5862 -0.9122 20 9 4.2809 -7.5417 -2.1882 21 9 5.5228 -6.3874 -0.6451 22 7 3.8419 -4.9305 -0.5547 23 7 3.2178 -3.8534 -0.8785 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 1.6352 -4.8192 1.7373 28 1 4.7566 -6.5422 1.5603 29 1 3.0670 -6.9211 1.9724 30 1 4.6826 -8.9612 1.7628 31 1 3.2132 -9.7204 1.0742 32 1 5.6335 -10.6364 0.3177 33 1 4.3686 -10.3971 -0.9303 34 1 6.6762 -8.5211 -0.1693 35 1 6.1822 -9.0650 -1.8033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594655572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:22 Heat of formation + Delta-G solvation = -24.321545 kcal Electronic energy + Delta-G solvation = -21109.152861 eV Core-core repulsion = 17586.310609 eV Total energy + Delta-G solvation = -3522.842252 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.78115 -47.87634 -43.98856 -38.77324 -35.99038 -35.02478 -32.86391 -31.42444 -29.35302 -28.67412 -26.65438 -25.43841 -22.85554 -22.13311 -22.01311 -21.02531 -18.68169 -18.46790 -18.20675 -17.90105 -16.95572 -16.65905 -16.51944 -15.69769 -15.30182 -15.06652 -15.02463 -14.60613 -14.39390 -14.18018 -14.09739 -13.73168 -13.48680 -13.05317 -12.87278 -12.74788 -12.64951 -12.44288 -12.18530 -12.13638 -11.83159 -11.71423 -11.63362 -11.45139 -11.31666 -10.82493 -10.58660 -9.82939 -8.19345 -6.28134 0.79967 1.38780 1.42967 1.50601 1.59887 1.80838 2.44018 2.77358 2.95411 3.13099 3.20784 3.30653 3.61231 3.82950 3.92480 4.05491 4.17683 4.26905 4.34479 4.38574 4.49588 4.50408 4.58620 4.81096 4.83344 5.00171 5.08102 5.13460 5.29526 5.31426 5.46411 5.54488 5.76024 5.87563 6.22804 6.79623 7.38325 7.77934 8.91497 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.043270 B = 0.004111 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.939764 B = 6809.077549 C = 7037.251359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.042 0.958 9 C 0.104 3.896 10 C -0.012 4.012 11 C -0.055 4.055 12 N -0.291 5.291 13 C 0.113 3.887 14 C -0.144 4.144 15 H 0.092 0.908 16 C -0.101 4.101 17 C -0.116 4.116 18 C -0.158 4.158 19 C 0.261 3.739 20 F -0.222 7.222 21 F -0.199 7.199 22 N -0.099 5.099 23 N -0.321 5.321 24 H 0.267 0.733 25 H 0.005 0.995 26 H 0.035 0.965 27 H 0.228 0.772 28 H 0.115 0.885 29 H 0.159 0.841 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.116 -25.158 7.231 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.060 0.940 9 C 0.065 3.935 10 C -0.150 4.150 11 C -0.205 4.205 12 N -0.087 5.087 13 C -0.006 4.006 14 C -0.164 4.164 15 H 0.110 0.890 16 C -0.139 4.139 17 C -0.153 4.153 18 C -0.196 4.196 19 C 0.225 3.775 20 F -0.204 7.204 21 F -0.180 7.180 22 N -0.078 5.078 23 N -0.187 5.187 24 H 0.076 0.924 25 H 0.023 0.977 26 H 0.054 0.946 27 H 0.244 0.756 28 H 0.133 0.867 29 H 0.177 0.823 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.092 -25.171 6.147 27.807 hybrid contribution -0.599 1.596 0.060 1.705 sum 9.493 -23.575 6.207 26.162 Atomic orbital electron populations 1.70025 1.07236 1.28010 1.51404 1.25788 0.95811 1.02642 0.94648 0.85558 0.78411 0.78582 0.78811 1.20335 1.19815 1.19237 1.21249 0.92693 0.91675 1.50802 0.93993 1.17366 0.91086 0.88387 0.96666 1.22720 0.98661 0.99171 0.94470 1.23786 0.97142 0.94247 1.05284 1.47653 1.21227 1.20224 1.19592 1.22606 1.05341 0.77310 0.95379 1.23244 0.99112 0.98289 0.95741 0.88984 1.22430 1.02324 0.90405 0.98724 1.22510 0.98090 0.96315 0.98387 1.23461 0.98209 0.93046 1.04881 1.22511 0.91688 0.83665 0.79681 1.92967 1.86430 1.96896 1.44079 1.93074 1.81547 1.49940 1.93473 1.78403 1.20509 1.06066 1.02798 1.75026 1.08209 1.09793 1.25700 0.92434 0.97732 0.94634 0.75562 0.86661 0.82341 0.87489 0.87534 0.86937 0.90659 0.87054 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 2 C 0.01 0.56 5.46 84.66 0.46 1.02 16 3 Si 0.96 46.84 29.54 68.60 2.03 48.86 16 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.53 -32.26 9.09 25.60 0.23 -32.03 16 8 H 0.04 2.65 7.74 -2.91 -0.02 2.63 16 9 C 0.10 5.83 5.55 29.10 0.16 5.99 16 10 C -0.01 -0.61 6.44 41.60 0.27 -0.34 16 11 C -0.06 -1.98 11.49 83.49 0.96 -1.02 16 12 N -0.29 -9.63 3.44 -347.73 -1.20 -10.83 16 13 C 0.11 2.04 5.33 86.38 0.46 2.50 16 14 C -0.14 -2.44 2.98 -10.07 -0.03 -2.47 16 15 H 0.09 1.85 8.02 -2.39 -0.02 1.83 16 16 C -0.10 -0.63 6.36 31.67 0.20 -0.43 16 17 C -0.12 -0.84 6.91 31.89 0.22 -0.62 16 18 C -0.16 -2.22 6.41 31.71 0.20 -2.02 16 19 C 0.26 6.28 2.03 31.36 0.06 6.34 16 20 F -0.22 -7.22 17.04 44.97 0.77 -6.45 16 21 F -0.20 -6.40 12.54 44.97 0.56 -5.84 16 22 N -0.10 -4.35 9.52 37.02 0.35 -4.00 16 23 N -0.32 -16.85 12.40 -48.60 -0.60 -17.45 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.04 1.94 8.12 -2.39 -0.02 1.92 16 27 H 0.23 5.74 8.06 -2.92 -0.02 5.72 16 28 H 0.12 1.84 7.66 -2.39 -0.02 1.83 16 29 H 0.16 1.37 8.07 -2.39 -0.02 1.35 16 30 H 0.11 0.22 7.85 -2.39 -0.02 0.20 16 31 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 1.25 8.12 -2.39 -0.02 1.23 16 35 H 0.09 1.30 8.11 -2.39 -0.02 1.28 16 Total: -1.00 -84.44 299.77 6.49 -77.95 By element: Atomic # 1 Polarization: -3.73 SS G_CDS: 1.09 Total: -2.64 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 3.20 Total: -23.08 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -1.16 Total: -88.80 kcal Atomic # 9 Polarization: -13.62 SS G_CDS: 1.33 Total: -12.29 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -84.44 6.49 -77.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.625 kcal (2) G-P(sol) polarization free energy of solvation -84.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds