Wall clock time and date at job start Mon Mar 30 2020 02:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86800 * 120.00487 * 2 1 4 4 H 1.48498 * 109.47526 * 179.72456 * 3 2 1 5 5 H 1.48499 * 109.47266 * 299.72905 * 3 2 1 6 6 H 1.48505 * 109.46997 * 59.72752 * 3 2 1 7 7 C 1.40278 * 119.99942 * 179.72768 * 2 1 3 8 8 H 1.07996 * 120.00224 * 171.85447 * 7 2 1 9 9 C 1.40895 * 119.99425 * 351.85190 * 7 2 1 10 10 C 1.40700 * 120.33180 * 324.19698 * 9 7 2 11 11 C 1.37595 * 119.88272 * 180.02562 * 10 9 7 12 12 C 1.38827 * 120.57172 * 0.02906 * 11 10 9 13 13 C 1.38224 * 120.67379 * 359.97438 * 12 11 10 14 14 C 1.39226 * 120.09204 * 359.71643 * 13 12 11 15 15 C 1.47428 * 120.28452 * 180.29995 * 14 13 12 16 16 O 1.21606 * 120.00247 * 183.31911 * 15 14 13 17 17 N 1.34777 * 119.99827 * 3.32362 * 15 14 13 18 18 C 1.46502 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.09002 * 115.55565 * 9.26058 * 18 17 15 20 20 C 1.53119 * 117.51501 * 223.46120 * 18 17 15 21 21 C 1.52454 * 117.51797 * 154.99574 * 18 17 15 22 22 C 1.53263 * 128.58488 * 349.84986 * 21 18 17 23 23 C 1.53885 * 86.88271 * 194.88544 * 22 21 18 24 24 C 1.53261 * 128.58783 * 225.04801 * 21 18 17 25 25 H 0.97012 * 119.99778 * 0.27401 * 1 2 3 26 26 H 1.08004 * 120.05860 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.71088 * 180.02562 * 11 10 9 28 28 H 1.07993 * 119.66129 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.95272 * 180.02562 * 13 12 11 30 30 H 0.97005 * 120.00414 * 359.97438 * 17 15 14 31 31 H 1.09001 * 117.51482 * 359.97438 * 20 18 17 32 32 H 1.09007 * 117.51852 * 145.09702 * 20 18 17 33 33 H 1.08998 * 113.64478 * 309.38229 * 22 21 18 34 34 H 1.08993 * 113.64609 * 80.38725 * 22 21 18 35 35 H 1.08997 * 113.59300 * 270.39073 * 23 22 21 36 36 H 1.09000 * 113.58852 * 139.57114 * 23 22 21 37 37 H 1.08996 * 113.64270 * 279.61122 * 24 21 18 38 38 H 1.08996 * 113.64168 * 50.52290 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 0.0067 5 1 1.8866 2.3935 -1.2158 6 1 1.8766 2.3993 1.2092 7 6 2.0076 -1.2148 0.0058 8 1 3.0794 -1.2202 -0.1267 9 6 1.3136 -2.4280 0.1845 10 6 0.2023 -2.4907 1.0451 11 6 -0.4683 -3.6803 1.2132 12 6 -0.0579 -4.8234 0.5406 13 6 1.0308 -4.7882 -0.3103 14 6 1.7257 -3.5978 -0.5060 15 6 2.8835 -3.5539 -1.4177 16 8 3.5236 -2.5271 -1.5387 17 7 3.2324 -4.6519 -2.1170 18 6 4.3832 -4.6087 -3.0226 19 1 4.9975 -3.7104 -2.9598 20 6 4.2267 -5.2648 -4.3972 21 6 5.0894 -5.9249 -3.3275 22 6 4.9008 -7.2891 -2.6549 23 6 6.2183 -7.7099 -3.3297 24 6 6.5935 -6.2177 -3.3591 25 1 -0.4850 0.8402 -0.0040 26 1 -0.1234 -1.6068 1.5734 27 1 -1.3213 -3.7253 1.8741 28 1 -0.5952 -5.7492 0.6831 29 1 1.3397 -5.6843 -0.8280 30 1 2.7220 -5.4712 -2.0203 31 1 3.2677 -5.7289 -4.6274 32 1 4.7379 -4.7980 -5.2393 33 1 4.9592 -7.2519 -1.5672 34 1 4.0305 -7.8375 -3.0152 35 1 6.0818 -8.1449 -4.3198 36 1 6.8645 -8.3096 -2.6887 37 1 7.0800 -5.9073 -4.2837 38 1 7.1231 -5.8810 -2.4679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874775868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:43 Heat of formation + Delta-G solvation = 28.765598 kcal Electronic energy + Delta-G solvation = -20125.096176 eV Core-core repulsion = 17126.492734 eV Total energy + Delta-G solvation = -2998.603442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.74652 -38.48709 -36.68231 -34.43732 -33.65493 -31.59949 -29.87824 -29.22882 -25.74502 -25.43025 -23.04928 -22.89712 -21.39397 -20.60814 -19.45350 -18.34176 -17.46974 -16.42333 -15.76365 -15.28062 -15.20876 -14.73947 -14.15784 -13.94239 -13.77127 -13.12593 -12.79533 -12.69223 -12.41100 -12.24743 -11.97808 -11.63131 -11.53902 -11.37832 -11.13351 -11.07646 -10.64361 -10.51821 -10.36429 -10.30131 -10.07438 -9.78424 -9.62526 -9.27389 -8.39359 -8.07112 -7.58886 -7.33502 -6.78805 -4.39033 2.33739 2.80198 3.11772 3.20914 3.23079 3.74711 3.80320 3.99652 4.22769 4.60478 4.66218 4.71945 4.78542 4.95709 5.02917 5.36927 5.61843 5.64105 5.71880 5.73370 5.81846 5.82875 5.91413 5.97836 6.04512 6.25571 6.28634 6.32979 6.35156 6.63564 6.94667 7.09807 7.16428 7.26225 7.45808 7.61181 7.88074 7.99213 8.17778 8.38835 8.68475 8.83198 8.90848 9.41106 10.17046 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.005284 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.303854 B = 5298.125103 C = 6414.965443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.420 4.420 8 H 0.109 0.891 9 C 0.147 3.853 10 C -0.145 4.145 11 C -0.096 4.096 12 C -0.243 4.243 13 C -0.058 4.058 14 C -0.260 4.260 15 C 0.568 3.432 16 O -0.537 6.537 17 N -0.717 5.717 18 C 0.114 3.886 19 H 0.133 0.867 20 C -0.168 4.168 21 C -0.178 4.178 22 C -0.100 4.100 23 C -0.135 4.135 24 C -0.097 4.097 25 H 0.281 0.719 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.393 0.607 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -9.927 -4.661 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.448 4.448 8 H 0.127 0.873 9 C 0.143 3.857 10 C -0.164 4.164 11 C -0.115 4.115 12 C -0.263 4.263 13 C -0.077 4.077 14 C -0.265 4.265 15 C 0.362 3.638 16 O -0.415 6.415 17 N -0.368 5.368 18 C 0.007 3.993 19 H 0.151 0.849 20 C -0.207 4.207 21 C -0.180 4.180 22 C -0.137 4.137 23 C -0.173 4.173 24 C -0.135 4.135 25 H 0.092 0.908 26 H 0.134 0.866 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.227 0.773 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.734 -8.980 -4.726 12.179 hybrid contribution -0.210 0.209 -0.173 0.343 sum 6.524 -8.771 -4.899 11.979 Atomic orbital electron populations 1.69721 1.07773 1.29467 1.35028 1.26136 0.94787 1.01797 0.92213 0.86110 0.81334 0.80184 0.78290 1.17997 1.19938 1.19901 1.20305 0.97486 0.89356 1.37698 0.87293 1.17491 0.89937 0.91347 0.86963 1.21352 0.98494 0.96252 1.00340 1.20805 0.98262 0.93639 0.98816 1.20287 1.01843 0.97549 1.06599 1.20646 0.95052 0.95159 0.96821 1.19453 1.02951 0.96532 1.07574 1.18424 0.84230 0.81878 0.79226 1.90650 1.54279 1.30231 1.66372 1.45407 1.31092 1.14885 1.45427 1.21338 0.90985 0.96234 0.90732 0.84934 1.23346 1.00317 1.03431 0.93602 1.22810 0.95722 0.95080 1.04352 1.22386 0.97790 0.93677 0.99843 1.22721 0.97518 0.96232 1.00812 1.22421 0.93336 0.95713 1.01984 0.90799 0.86559 0.89044 0.89076 0.89341 0.77269 0.88655 0.88351 0.89657 0.91646 0.90332 0.91554 0.91555 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.71 11.20 55.56 0.62 -20.08 16 2 C 0.07 1.78 5.27 -17.30 -0.09 1.68 16 3 Si 0.92 19.78 29.57 -169.99 -5.03 14.76 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.42 -11.61 7.73 -37.81 -0.29 -11.91 16 8 H 0.11 3.13 5.80 -52.49 -0.30 2.83 16 9 C 0.15 3.95 5.49 -106.54 -0.58 3.37 16 10 C -0.15 -3.69 8.61 -38.89 -0.33 -4.03 16 11 C -0.10 -2.17 10.01 -39.60 -0.40 -2.57 16 12 C -0.24 -5.17 10.03 -39.37 -0.39 -5.57 16 13 C -0.06 -1.24 9.53 -39.22 -0.37 -1.61 16 14 C -0.26 -6.39 5.92 -104.37 -0.62 -7.01 16 15 C 0.57 13.29 7.73 -12.52 -0.10 13.20 16 16 O -0.54 -14.21 13.10 5.27 0.07 -14.14 16 17 N -0.72 -13.10 5.50 -55.09 -0.30 -13.40 16 18 C 0.11 1.82 6.43 -68.15 -0.44 1.39 16 19 H 0.13 2.34 7.40 -51.93 -0.38 1.96 16 20 C -0.17 -2.16 10.46 -26.95 -0.28 -2.44 16 21 C -0.18 -2.22 3.01 -154.80 -0.47 -2.69 16 22 C -0.10 -1.10 8.08 -26.13 -0.21 -1.31 16 23 C -0.14 -1.28 8.08 -25.81 -0.21 -1.49 16 24 C -0.10 -1.03 8.10 -26.13 -0.21 -1.25 16 25 H 0.28 6.64 8.29 -40.81 -0.34 6.31 16 26 H 0.12 3.02 6.69 -52.48 -0.35 2.67 16 27 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.09 1.57 6.41 -52.49 -0.34 1.23 16 30 H 0.39 6.33 6.87 -40.82 -0.28 6.05 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.14 8.14 -51.92 -0.42 0.71 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 317.88 15.07 4.79 4.79 Total: -1.00 -29.28 317.88 -9.87 -39.15 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.02 Total: 11.16 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -5.00 Total: -22.23 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.32 Total: -33.48 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.28 -9.87 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874775868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.916 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds