Wall clock time and date at job start Mon Mar 30 2020 01:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 120.00056 * 2 1 4 4 H 1.48496 * 109.47200 * 270.00053 * 3 2 1 5 5 H 1.48504 * 109.47060 * 30.00224 * 3 2 1 6 6 H 1.48502 * 109.46968 * 150.00066 * 3 2 1 7 7 C 1.38812 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99852 * 197.35834 * 7 2 1 9 9 N 1.36935 * 120.00229 * 17.35401 * 7 2 1 10 10 C 1.46929 * 120.62565 * 27.67780 * 9 7 2 11 11 C 1.53193 * 108.77169 * 126.41731 * 10 9 7 12 12 C 1.53035 * 109.31835 * 54.63416 * 11 10 9 13 13 H 1.09002 * 109.46364 * 58.63642 * 12 11 10 14 14 N 1.46496 * 109.46339 * 178.61452 * 12 11 10 15 15 C 1.34771 * 119.99843 * 274.99597 * 14 12 11 16 16 O 1.21279 * 120.00472 * 0.02562 * 15 14 12 17 17 C 1.50702 * 120.00110 * 179.97438 * 15 14 12 18 18 C 1.50694 * 109.47427 * 179.97438 * 17 15 14 19 19 N 1.34781 * 120.00048 * 179.72640 * 18 17 15 20 20 O 1.21279 * 119.99930 * 0.02562 * 18 17 15 21 21 C 1.53041 * 109.53367 * 298.63321 * 12 11 10 22 22 H 1.09000 * 109.50182 * 301.41148 * 21 12 11 23 23 O 1.42903 * 109.49729 * 181.31429 * 21 12 11 24 24 C 1.46920 * 120.63177 * 207.69910 * 9 7 2 25 25 H 0.97001 * 119.99810 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.58911 * 6.62595 * 10 9 7 27 27 H 1.09005 * 109.69965 * 246.26593 * 10 9 7 28 28 H 1.09003 * 109.49670 * 294.67437 * 11 10 9 29 29 H 1.09002 * 109.52250 * 174.60078 * 11 10 9 30 30 H 0.97001 * 120.00265 * 94.99646 * 14 12 11 31 31 H 1.09001 * 109.46849 * 59.99992 * 17 15 14 32 32 H 1.09003 * 109.47611 * 300.00448 * 17 15 14 33 33 H 0.97005 * 119.99461 * 180.28056 * 19 18 17 34 34 H 0.96991 * 119.99985 * 0.27375 * 19 18 17 35 35 H 0.96705 * 114.00123 * 179.97438 * 23 21 12 36 36 H 1.08996 * 109.59208 * 353.37463 * 24 9 7 37 37 H 1.09002 * 109.58547 * 113.65563 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2785 9 7 1.3724 -2.3609 -0.3548 10 6 0.2278 -2.3339 -1.2757 11 6 0.5006 -3.3036 -2.4298 12 6 0.8183 -4.6890 -1.8626 13 1 -0.0207 -5.0356 -1.2591 14 7 1.0473 -5.6268 -2.9645 15 6 0.0035 -6.2476 -3.5489 16 8 -1.1253 -6.0296 -3.1629 17 6 0.2390 -7.2119 -4.6828 18 6 -1.0812 -7.7646 -5.1545 19 7 -1.1170 -8.6484 -6.1715 20 8 -2.1119 -7.4101 -4.6227 21 6 2.0741 -4.6096 -0.9914 22 1 2.9080 -4.2395 -1.5879 23 8 2.3876 -5.9094 -0.4870 24 6 1.8192 -3.6547 0.1791 25 1 -0.4850 0.8401 -0.0004 26 1 0.0986 -1.3254 -1.6684 27 1 -0.6758 -2.6391 -0.7478 28 1 1.3492 -2.9457 -3.0128 29 1 -0.3799 -3.3656 -3.0693 30 1 1.9501 -5.8010 -3.2735 31 1 0.8726 -8.0294 -4.3388 32 1 0.7306 -6.6926 -5.5054 33 1 -1.9672 -9.0011 -6.4778 34 1 -0.2928 -8.9317 -6.5970 35 1 3.1745 -5.9341 0.0746 36 1 2.7399 -3.5178 0.7461 37 1 1.0479 -4.0678 0.8291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099744837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:32 Heat of formation + Delta-G solvation = -100.665453 kcal Electronic energy + Delta-G solvation = -21402.226047 eV Core-core repulsion = 17987.160791 eV Total energy + Delta-G solvation = -3415.065256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18207 -38.90417 -37.58545 -35.38987 -34.23371 -33.71837 -32.02640 -30.75102 -29.50977 -28.36499 -25.09203 -22.57037 -22.11005 -21.12997 -20.01570 -19.38689 -17.67854 -17.25550 -17.04225 -16.54898 -15.95418 -15.78840 -15.48974 -14.81377 -14.04691 -13.98354 -13.84651 -13.63937 -13.25089 -13.12230 -12.73047 -12.36362 -12.19738 -11.81920 -11.54729 -11.09144 -10.87542 -10.63712 -10.30469 -10.22580 -10.16054 -9.92509 -9.78874 -9.72102 -9.59730 -9.18972 -8.67735 -8.41605 -6.76220 -5.83324 -3.27793 2.57503 2.96801 3.05001 3.35422 3.41886 3.43773 3.70979 4.37944 4.51640 4.59391 4.90727 5.06513 5.19168 5.32277 5.34977 5.50811 5.58889 5.79882 6.00342 6.15581 6.36818 6.50237 6.56969 6.63682 6.70518 6.80061 6.93828 7.15141 7.31905 7.63752 7.74150 7.80948 7.92773 8.20218 8.38966 8.59241 9.14422 9.76946 10.32970 11.25075 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.031765 B = 0.004247 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.267403 B = 6591.937029 C = 7078.609184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.164 3.836 13 H 0.087 0.913 14 N -0.720 5.720 15 C 0.508 3.492 16 O -0.498 6.498 17 C -0.167 4.167 18 C 0.514 3.486 19 N -0.863 5.863 20 O -0.493 6.493 21 C 0.081 3.919 22 H 0.056 0.944 23 O -0.571 6.571 24 C 0.120 3.880 25 H 0.256 0.744 26 H 0.093 0.907 27 H 0.024 0.976 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.394 0.606 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.401 0.599 34 H 0.398 0.602 35 H 0.373 0.627 36 H 0.059 0.941 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -15.553 -11.414 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.105 0.895 14 N -0.371 5.371 15 C 0.291 3.709 16 O -0.371 6.371 17 C -0.210 4.210 18 C 0.296 3.704 19 N -0.430 5.430 20 O -0.364 6.364 21 C 0.020 3.980 22 H 0.074 0.926 23 O -0.376 6.376 24 C -0.007 4.007 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.227 0.773 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.232 0.768 34 H 0.225 0.775 35 H 0.219 0.781 36 H 0.078 0.922 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.278 -15.029 -10.940 19.075 hybrid contribution 1.597 0.589 -0.279 1.724 sum 5.875 -14.440 -11.219 19.207 Atomic orbital electron populations 1.70044 1.05292 1.25752 1.53072 1.25079 0.95293 0.98536 1.00514 0.86261 0.79053 0.83521 0.77716 1.21360 1.21689 1.20416 1.19172 0.92705 0.84695 1.42416 0.91505 1.44049 1.35866 1.01012 1.50295 1.20832 0.88686 0.98421 0.87625 1.22595 1.00980 0.94336 1.00742 1.20967 0.97439 0.89275 0.86278 0.89490 1.46046 1.08900 1.45499 1.36682 1.19846 0.85599 0.81684 0.83811 1.90870 1.21868 1.62045 1.62281 1.21600 0.97918 1.01262 1.00217 1.20065 0.91081 0.79267 0.79986 1.43883 1.12634 1.48447 1.37995 1.90931 1.34582 1.56598 1.54290 1.22772 0.96005 0.83023 0.96204 0.92626 1.86485 1.50556 1.30323 1.70187 1.21525 0.98765 0.87469 0.92973 0.93416 0.88897 0.95775 0.92423 0.91899 0.77330 0.86289 0.86291 0.76833 0.77454 0.78074 0.92226 0.95317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.06 16 3 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -7.00 9.58 -15.06 -0.14 -7.14 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.53 2.99 -172.32 -0.52 -15.05 16 10 C 0.17 4.16 5.31 -3.71 -0.02 4.14 16 11 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 12 C 0.16 3.01 2.12 -67.89 -0.14 2.87 16 13 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 14 N -0.72 -10.50 4.92 -53.77 -0.26 -10.76 16 15 C 0.51 7.96 7.79 -10.99 -0.09 7.88 16 16 O -0.50 -10.69 13.84 -18.96 -0.26 -10.95 16 17 C -0.17 -1.60 6.18 -29.04 -0.18 -1.78 16 18 C 0.51 6.21 8.09 -10.99 -0.09 6.13 16 19 N -0.86 -5.83 8.87 31.22 0.28 -5.56 16 20 O -0.49 -9.16 15.02 -18.96 -0.28 -9.44 16 21 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 O -0.57 -8.42 13.16 -35.23 -0.46 -8.89 16 24 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.09 2.51 6.04 -51.93 -0.31 2.19 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.39 4.40 8.60 -40.82 -0.35 4.05 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 2.49 8.93 -40.82 -0.36 2.13 16 34 H 0.40 1.17 8.83 -40.82 -0.36 0.81 16 35 H 0.37 3.90 9.08 45.56 0.41 4.31 16 36 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -37.71 310.01 -6.54 -44.25 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.29 Total: 8.07 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -1.00 Total: 12.79 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.12 Total: -56.82 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.01 Total: -29.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -37.71 -6.54 -44.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099744837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.413 kcal (2) G-P(sol) polarization free energy of solvation -37.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds