Wall clock time and date at job start Mon Mar 30 2020 01:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00192 * 2 1 4 4 H 1.48499 * 109.47405 * 272.90743 * 3 2 1 5 5 H 1.48504 * 109.47097 * 32.90622 * 3 2 1 6 6 H 1.48499 * 109.47244 * 152.89884 * 3 2 1 7 7 C 1.38809 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00408 * 339.35848 * 7 2 1 9 9 N 1.36942 * 119.99918 * 159.36069 * 7 2 1 10 10 C 1.46917 * 120.63130 * 332.59926 * 9 7 2 11 11 C 1.53195 * 108.77715 * 233.63283 * 10 9 7 12 12 C 1.53042 * 109.30944 * 305.36328 * 11 10 9 13 13 H 1.08997 * 109.46053 * 301.34271 * 12 11 10 14 14 N 1.46502 * 109.44832 * 181.37920 * 12 11 10 15 15 C 1.34776 * 119.99911 * 84.96349 * 14 12 11 16 16 O 1.21279 * 120.00256 * 0.02562 * 15 14 12 17 17 C 1.50700 * 119.99854 * 179.97438 * 15 14 12 18 18 C 1.50700 * 109.47350 * 180.02562 * 17 15 14 19 19 N 1.34769 * 120.00296 * 180.02562 * 18 17 15 20 20 O 1.21282 * 119.99541 * 0.02562 * 18 17 15 21 21 C 1.53037 * 109.53735 * 61.36678 * 12 11 10 22 22 H 1.08998 * 109.50194 * 58.61509 * 21 12 11 23 23 O 1.42902 * 109.49769 * 178.68449 * 21 12 11 24 24 C 1.46926 * 120.62972 * 152.62383 * 9 7 2 25 25 H 0.97008 * 120.00173 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.58727 * 353.41510 * 10 9 7 27 27 H 1.08994 * 109.59267 * 113.69939 * 10 9 7 28 28 H 1.08999 * 109.49714 * 185.41332 * 11 10 9 29 29 H 1.09003 * 109.49784 * 65.31656 * 11 10 9 30 30 H 0.96997 * 119.99613 * 264.96850 * 14 12 11 31 31 H 1.08997 * 109.47403 * 300.00705 * 17 15 14 32 32 H 1.08999 * 109.47168 * 60.00213 * 17 15 14 33 33 H 0.97007 * 119.99923 * 0.02562 * 19 18 17 34 34 H 0.97002 * 120.00143 * 179.97438 * 19 18 17 35 35 H 0.96696 * 114.00062 * 179.97438 * 23 21 12 36 36 H 1.09002 * 109.58796 * 6.57515 * 24 9 7 37 37 H 1.08999 * 109.70269 * 246.22760 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0819 -1.3982 5 1 1.4797 2.6341 0.7606 6 1 3.5770 1.4232 0.6378 7 6 2.0102 -1.2021 -0.0005 8 1 1.5222 -2.1076 0.3288 9 7 3.3137 -1.2401 -0.4186 10 6 3.8174 -0.2586 -1.3889 11 6 4.4617 -1.0083 -2.5593 12 6 5.5282 -1.9652 -2.0217 13 1 6.2778 -1.3995 -1.4682 14 7 6.1692 -2.6597 -3.1411 15 6 7.1986 -2.0823 -3.7918 16 8 7.5945 -0.9880 -3.4505 17 6 7.8583 -2.7970 -4.9429 18 6 8.9725 -1.9437 -5.4919 19 7 9.7073 -2.3827 -6.5329 20 8 9.2080 -0.8619 -4.9968 21 6 4.8744 -2.9905 -1.0926 22 1 4.1079 -3.5400 -1.6391 23 8 5.8660 -3.9022 -0.6153 24 6 4.2348 -2.2633 0.0943 25 1 -0.4851 0.8401 0.0004 26 1 2.9909 0.3501 -1.7556 27 1 4.5583 0.3815 -0.9101 28 1 4.9242 -0.2928 -3.2391 29 1 3.6986 -1.5760 -3.0919 30 1 5.8527 -3.5351 -3.4138 31 1 8.2656 -3.7465 -4.5956 32 1 7.1225 -2.9820 -5.7255 33 1 9.5187 -3.2478 -6.9291 34 1 10.4242 -1.8332 -6.8865 35 1 5.5216 -4.5812 -0.0192 36 1 3.6838 -2.9773 0.7065 37 1 5.0118 -1.7904 0.6949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099744847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:41 Heat of formation + Delta-G solvation = -94.992692 kcal Electronic energy + Delta-G solvation = -21499.421003 eV Core-core repulsion = 18084.601736 eV Total energy + Delta-G solvation = -3414.819267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29478 -39.06727 -37.76839 -35.64180 -34.36866 -33.78949 -32.14803 -30.98196 -29.75660 -28.95180 -25.09451 -22.74454 -22.38453 -21.26449 -20.18095 -19.67863 -17.74797 -17.34724 -17.14140 -16.65864 -16.14804 -15.87784 -15.72024 -14.89366 -14.49698 -14.21371 -13.92588 -13.73495 -13.39208 -13.23445 -12.78309 -12.53157 -12.37585 -12.08236 -11.91109 -11.54053 -11.16598 -10.98447 -10.27963 -10.18156 -10.10960 -9.89603 -9.86408 -9.84993 -9.52570 -9.34968 -8.74589 -8.64730 -7.06708 -6.00277 -3.38098 2.50259 2.85256 2.95078 3.33587 3.49536 3.53740 3.61144 4.28804 4.49529 4.50441 4.82467 4.92280 4.98546 5.09735 5.18654 5.34992 5.42165 5.58131 5.77220 5.82798 6.06252 6.25952 6.32280 6.41832 6.53226 6.57425 6.60258 6.75042 6.82356 7.08847 7.67883 7.77334 7.91658 8.13121 8.25911 8.46861 8.85737 9.65369 10.00890 11.15084 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.004756 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.979459 B = 5885.391509 C = 6498.787117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.125 3.875 11 C -0.140 4.140 12 C 0.164 3.836 13 H 0.089 0.911 14 N -0.719 5.719 15 C 0.509 3.491 16 O -0.499 6.499 17 C -0.167 4.167 18 C 0.514 3.486 19 N -0.863 5.863 20 O -0.494 6.494 21 C 0.080 3.920 22 H 0.061 0.939 23 O -0.570 6.570 24 C 0.123 3.877 25 H 0.264 0.736 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.396 0.604 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.398 0.602 34 H 0.401 0.599 35 H 0.375 0.625 36 H 0.069 0.931 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.667 -11.686 -11.727 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.104 0.896 9 N -0.327 5.327 10 C 0.000 4.000 11 C -0.181 4.181 12 C 0.059 3.941 13 H 0.107 0.893 14 N -0.371 5.371 15 C 0.292 3.708 16 O -0.372 6.372 17 C -0.210 4.210 18 C 0.296 3.704 19 N -0.429 5.429 20 O -0.365 6.365 21 C 0.019 3.981 22 H 0.079 0.921 23 O -0.374 6.374 24 C -0.004 4.004 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.226 0.774 34 H 0.232 0.768 35 H 0.222 0.778 36 H 0.088 0.912 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.189 -9.700 -11.332 21.288 hybrid contribution -0.003 -0.180 -0.250 0.308 sum 15.185 -9.879 -11.582 21.502 Atomic orbital electron populations 1.69828 1.05742 1.26738 1.52508 1.25255 0.95221 0.97659 0.99084 0.86993 0.80138 0.84496 0.77288 1.21394 1.22969 1.19384 1.18884 0.84658 0.94879 1.41015 0.89567 1.44321 1.08539 1.33081 1.46766 1.21385 0.97504 0.92057 0.89097 1.22419 0.97347 0.98605 0.99694 1.20911 0.94849 0.92569 0.85721 0.89343 1.45995 1.34487 1.22067 1.34526 1.19871 0.80506 0.86639 0.83774 1.90865 1.61925 1.19401 1.64977 1.21596 0.98809 1.00977 0.99615 1.20052 0.83077 0.87083 0.80154 1.43879 1.38546 1.24190 1.36276 1.90929 1.67389 1.20989 1.57237 1.22726 0.89192 0.90094 0.96045 0.92101 1.86477 1.37720 1.45183 1.68042 1.21550 0.93136 0.92407 0.93287 0.92633 0.90377 0.95098 0.91414 0.91329 0.77065 0.86169 0.86186 0.77398 0.76794 0.77783 0.91223 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.43 13.97 55.49 0.78 -26.66 16 2 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 3 Si 0.88 22.62 24.34 -169.99 -4.14 18.48 16 4 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.87 6.64 56.52 0.38 -6.50 16 7 C -0.27 -7.28 10.04 -15.06 -0.15 -7.43 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 9 N -0.60 -14.06 2.77 -172.33 -0.48 -14.53 16 10 C 0.13 2.81 4.21 -3.71 -0.02 2.79 16 11 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 12 C 0.16 2.78 2.12 -67.89 -0.14 2.63 16 13 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 14 N -0.72 -9.70 4.92 -53.77 -0.26 -9.97 16 15 C 0.51 7.47 7.79 -10.99 -0.09 7.39 16 16 O -0.50 -10.15 13.84 -18.96 -0.26 -10.41 16 17 C -0.17 -1.48 6.19 -29.03 -0.18 -1.66 16 18 C 0.51 5.88 8.09 -10.99 -0.09 5.79 16 19 N -0.86 -5.38 8.87 31.22 0.28 -5.10 16 20 O -0.49 -8.82 15.02 -18.96 -0.28 -9.11 16 21 C 0.08 1.27 3.14 -26.61 -0.08 1.18 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 O -0.57 -7.75 13.16 -35.23 -0.46 -8.22 16 24 C 0.12 2.35 6.14 -3.71 -0.02 2.32 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.08 1.89 4.49 -51.92 -0.23 1.66 16 27 H 0.03 0.71 7.07 -51.93 -0.37 0.34 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 4.03 8.60 -40.82 -0.35 3.68 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 0.98 8.83 -40.82 -0.36 0.62 16 34 H 0.40 2.30 8.93 -40.82 -0.36 1.94 16 35 H 0.38 3.55 9.08 45.56 0.41 3.96 16 36 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -38.60 303.57 -5.49 -44.09 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.22 Total: 5.90 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -1.01 Total: 10.94 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.31 Total: -56.26 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.01 Total: -27.73 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.14 Total: 18.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -38.60 -5.49 -44.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099744847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.898 kcal (2) G-P(sol) polarization free energy of solvation -38.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds