Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21287 * 120.00226 * 2 1 4 4 N 1.34775 * 120.00002 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00426 * 180.02562 * 4 2 1 6 6 H 1.09003 * 110.89811 * 31.13108 * 5 4 2 7 7 C 1.54903 * 110.99081 * 267.27028 * 5 4 2 8 8 N 1.47848 * 104.79890 * 204.83573 * 7 5 4 9 9 C 1.46900 * 111.00105 * 146.35840 * 8 7 5 10 10 C 1.50698 * 109.46806 * 169.28505 * 9 8 7 11 11 O 1.21294 * 120.00084 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99932 * 180.02562 * 10 9 8 13 13 C 1.37094 * 119.99843 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00649 * 359.97438 * 13 12 10 15 15 C 1.38955 * 120.00091 * 179.97438 * 13 12 10 16 16 N 1.31416 * 119.99460 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00302 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47031 * 60.00267 * 17 15 13 19 19 H 1.48502 * 109.47196 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47473 * 300.00633 * 17 15 13 21 21 C 1.47442 * 108.56216 * 24.09035 * 8 7 5 22 22 C 1.54314 * 107.23524 * 359.01488 * 21 8 7 23 23 H 1.08997 * 110.71055 * 96.27323 * 22 21 8 24 24 O 1.42903 * 110.70593 * 219.32823 * 22 21 8 25 25 H 1.08996 * 109.47164 * 270.00481 * 1 2 3 26 26 H 1.09007 * 109.46806 * 30.00731 * 1 2 3 27 27 H 1.09000 * 109.47040 * 149.99929 * 1 2 3 28 28 H 0.96999 * 119.99783 * 359.97438 * 4 2 1 29 29 H 1.08999 * 110.37849 * 86.00293 * 7 5 4 30 30 H 1.09003 * 110.46503 * 323.71175 * 7 5 4 31 31 H 1.08997 * 109.47348 * 289.28512 * 9 8 7 32 32 H 1.09000 * 109.46683 * 49.28582 * 9 8 7 33 33 H 0.97001 * 119.99954 * 359.97438 * 12 10 9 34 34 H 0.97001 * 119.99448 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.89209 * 239.60495 * 21 8 7 36 36 H 1.09004 * 110.02073 * 118.49418 * 21 8 7 37 37 H 0.96700 * 114.00311 * 298.54937 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 1 4.0346 -0.2955 0.5275 7 6 4.2013 -1.2365 -1.4433 8 7 5.5477 -1.8310 -1.3020 9 6 5.8779 -2.6683 -2.4630 10 6 7.3374 -3.0406 -2.4148 11 8 8.0340 -2.6468 -1.5033 12 7 7.8688 -3.8104 -3.3851 13 6 9.1966 -4.1487 -3.3416 14 1 9.8170 -3.7980 -2.5300 15 6 9.7445 -4.9428 -4.3416 16 7 8.9898 -5.3690 -5.3294 17 14 11.5539 -5.4031 -4.2827 18 1 11.8326 -6.1563 -3.0336 19 1 11.8876 -6.2503 -5.4559 20 1 12.3798 -4.1694 -4.3114 21 6 5.5851 -2.6175 -0.0555 22 6 4.2014 -2.4798 0.6137 23 1 3.5643 -3.3268 0.3593 24 8 4.3355 -2.3587 2.0312 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6959 -2.0072 0.0013 29 1 4.2711 -0.2366 -1.8715 30 1 3.5695 -1.8713 -2.0645 31 1 5.2711 -3.5735 -2.4425 32 1 5.6741 -2.1150 -3.3797 33 1 7.3118 -4.1251 -4.1142 34 1 9.3723 -5.9231 -6.0277 35 1 6.3577 -2.2266 0.6066 36 1 5.7853 -3.6650 -0.2810 37 1 4.7492 -3.1237 2.4540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190609607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = -143.158809 kcal Electronic energy + Delta-G solvation = -20866.575212 eV Core-core repulsion = 17449.667305 eV Total energy + Delta-G solvation = -3416.907906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32071 -40.28458 -39.32195 -36.94517 -35.95457 -35.40491 -33.28839 -31.97383 -30.32288 -29.05731 -27.78623 -25.93823 -22.70387 -22.37768 -21.60708 -20.95640 -19.88206 -18.55723 -17.90814 -17.78380 -17.51013 -16.74903 -16.54077 -16.17369 -15.94227 -15.55301 -15.33882 -14.94444 -14.50778 -14.30003 -14.17301 -13.81851 -13.52282 -13.41116 -13.28566 -13.11897 -12.98233 -12.84560 -12.49360 -12.43112 -12.12699 -11.74765 -11.49709 -11.33956 -10.95562 -10.36840 -10.22314 -10.00786 -9.25859 -8.46571 -5.95032 1.39428 1.41613 1.52127 1.62176 2.04684 2.05805 2.29588 2.74401 3.05561 3.19804 3.25072 3.58778 3.70236 3.88579 3.99967 4.16532 4.23069 4.25729 4.37696 4.46830 4.54451 4.57448 4.70121 4.78422 4.85656 5.02785 5.13663 5.36622 5.40949 5.80600 5.92612 6.05784 6.54350 6.61089 6.74373 7.13321 7.25841 7.56650 8.12951 8.70617 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.040174 B = 0.003471 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.796446 B = 8064.351363 C = 8401.694775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.504 3.496 3 O -0.601 6.601 4 N -0.704 5.704 5 C 0.146 3.854 6 H 0.077 0.923 7 C 0.042 3.958 8 N -0.527 5.527 9 C 0.054 3.946 10 C 0.440 3.560 11 O -0.617 6.617 12 N -0.573 5.573 13 C -0.333 4.333 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.920 5.920 17 Si 0.991 3.009 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.274 1.274 21 C 0.031 3.969 22 C 0.093 3.907 23 H 0.104 0.896 24 O -0.569 6.569 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.420 0.580 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.397 0.603 34 H 0.278 0.722 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.663 0.606 7.524 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.293 3.707 3 O -0.482 6.482 4 N -0.357 5.357 5 C 0.039 3.961 6 H 0.095 0.905 7 C -0.086 4.086 8 N -0.253 5.253 9 C -0.077 4.077 10 C 0.227 3.773 11 O -0.503 6.503 12 N -0.211 5.211 13 C -0.463 4.463 14 H 0.095 0.905 15 C -0.211 4.211 16 N -0.561 5.561 17 Si 0.815 3.185 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.200 1.200 21 C -0.098 4.098 22 C 0.032 3.968 23 H 0.122 0.878 24 O -0.377 6.377 25 H 0.128 0.872 26 H 0.111 0.889 27 H 0.131 0.869 28 H 0.258 0.742 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.231 0.769 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.661 2.435 7.880 20.402 hybrid contribution 0.654 -1.764 -0.473 1.940 sum -18.007 0.671 7.407 19.482 Atomic orbital electron populations 1.21896 0.87320 1.06496 1.06281 1.21795 0.92553 0.82633 0.73701 1.90737 1.72253 1.33435 1.51787 1.45807 1.05266 1.09812 1.74816 1.21711 0.81243 0.98230 0.94913 0.90493 1.23347 0.87897 1.00840 0.96541 1.62970 1.27403 1.33315 1.01641 1.21973 0.92456 0.97717 0.95546 1.20778 0.90845 0.82080 0.83626 1.90504 1.63805 1.58266 1.37708 1.41902 1.10056 1.45595 1.23550 1.19606 0.86642 1.30366 1.09688 0.90466 1.26000 1.04208 0.96291 0.94619 1.69661 1.38080 1.35956 1.12398 0.85019 0.77152 0.78298 0.78062 1.19622 1.19421 1.19967 1.23342 0.97486 0.96988 0.91998 1.23219 0.94885 0.97063 0.81626 0.87844 1.86487 1.84368 1.48213 1.18678 0.87204 0.88914 0.86887 0.74156 0.90643 0.90068 0.90028 0.87339 0.76949 0.91283 0.91968 0.92331 0.74972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 10.30 71.24 0.73 -0.72 16 2 C 0.50 10.22 7.94 87.66 0.70 10.92 16 3 O -0.60 -19.41 16.74 -3.05 -0.05 -19.46 16 4 N -0.70 -11.87 5.20 -436.00 -2.27 -14.14 16 5 C 0.15 3.53 3.14 46.37 0.15 3.68 16 6 H 0.08 2.51 7.54 -2.39 -0.02 2.49 16 7 C 0.04 1.08 6.38 86.77 0.55 1.63 16 8 N -0.53 -17.39 4.85 -890.11 -4.32 -21.71 16 9 C 0.05 1.83 5.03 85.56 0.43 2.26 16 10 C 0.44 20.82 7.43 87.66 0.65 21.47 16 11 O -0.62 -34.42 15.12 -3.07 -0.05 -34.46 16 12 N -0.57 -29.13 5.29 -306.98 -1.62 -30.75 16 13 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 14 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 16 N -0.92 -49.18 13.05 21.67 0.28 -48.90 16 17 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 C 0.03 0.92 5.41 86.64 0.47 1.39 16 22 C 0.09 1.98 3.97 31.77 0.13 2.11 16 23 H 0.10 1.49 8.01 -2.39 -0.02 1.47 16 24 O -0.57 -12.40 13.39 -148.98 -1.99 -14.39 16 25 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.42 3.68 8.57 -92.71 -0.79 2.88 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.59 7.81 -2.39 -0.02 1.57 16 31 H 0.08 2.25 7.96 -2.39 -0.02 2.23 16 32 H 0.11 3.28 8.07 -2.39 -0.02 3.26 16 33 H 0.40 18.97 7.90 -92.71 -0.73 18.23 16 34 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.06 2.27 8.06 -2.39 -0.02 2.25 16 36 H 0.06 1.79 7.32 -2.39 -0.02 1.78 16 37 H 0.40 5.43 9.11 -74.06 -0.67 4.76 16 Total: -1.00 -79.90 317.68 -3.98 -83.88 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -1.08 Total: 30.56 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 5.09 Total: 24.53 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -7.92 Total: -115.50 kcal Atomic # 8 Polarization: -66.22 SS G_CDS: -2.09 Total: -68.31 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -79.90 -3.98 -83.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190609607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.276 kcal (2) G-P(sol) polarization free energy of solvation -79.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds