Wall clock time and date at job start Mon Mar 30 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21278 * 120.00300 * 2 1 4 4 N 1.34777 * 119.99604 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99800 * 179.97438 * 4 2 1 6 6 H 1.08996 * 110.27141 * 32.91140 * 5 4 2 7 7 C 1.53998 * 110.31033 * 270.71926 * 5 4 2 8 8 N 1.47894 * 107.05842 * 239.86241 * 7 5 4 9 9 C 1.46896 * 111.00371 * 145.84600 * 8 7 5 10 10 C 1.50699 * 109.47524 * 170.00012 * 9 8 7 11 11 O 1.21293 * 119.99923 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00272 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00138 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00194 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00169 * 179.97438 * 13 12 10 16 16 N 1.31415 * 119.99612 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00002 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47404 * 59.99851 * 17 15 13 19 19 H 1.48503 * 109.46794 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47266 * 299.99785 * 17 15 13 21 21 C 1.48538 * 105.82328 * 25.32494 * 8 7 5 22 22 C 1.54590 * 110.31018 * 155.00245 * 5 4 2 23 23 H 1.09000 * 110.72855 * 215.49675 * 22 5 4 24 24 O 1.42903 * 110.72479 * 338.60475 * 22 5 4 25 25 H 1.08996 * 109.46905 * 269.99997 * 1 2 3 26 26 H 1.09002 * 109.46445 * 29.99829 * 1 2 3 27 27 H 1.08996 * 109.47341 * 149.99811 * 1 2 3 28 28 H 0.97003 * 120.00157 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.91297 * 359.21341 * 7 5 4 30 30 H 1.09002 * 109.91643 * 120.30686 * 7 5 4 31 31 H 1.09009 * 109.46841 * 289.99399 * 9 8 7 32 32 H 1.08994 * 109.47120 * 49.99498 * 9 8 7 33 33 H 0.96996 * 119.99868 * 359.97438 * 12 10 9 34 34 H 0.97005 * 119.99284 * 179.97438 * 16 15 13 35 35 H 1.08997 * 110.66866 * 202.36271 * 21 8 7 36 36 H 1.09002 * 110.66132 * 79.23018 * 21 8 7 37 37 H 0.96700 * 114.00311 * 180.02562 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0000 6 1 4.0238 -0.3086 0.5548 7 6 4.1799 -1.1502 -1.4444 8 7 4.9961 -2.3709 -1.6197 9 6 4.8816 -2.8887 -2.9896 10 6 5.9038 -3.9751 -3.2032 11 8 6.6544 -4.2871 -2.3030 12 7 5.9848 -4.5994 -4.3950 13 6 6.9152 -5.5874 -4.5895 14 1 7.5835 -5.8652 -3.7878 15 6 6.9983 -6.2313 -5.8179 16 7 6.1855 -5.8929 -6.7935 17 14 8.2665 -7.5770 -6.0831 18 1 8.0290 -8.6785 -5.1160 19 1 8.1508 -8.1001 -7.4681 20 1 9.6282 -7.0217 -5.8763 21 6 4.4740 -3.3522 -0.6343 22 6 4.1827 -2.4809 0.6133 23 1 5.0952 -2.2972 1.1805 24 8 3.1914 -3.0956 1.4389 25 1 -0.3633 0.0000 1.0276 26 1 -0.3632 0.8901 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6958 -2.0073 0.0005 29 1 3.3474 -1.1558 -2.1480 30 1 4.7937 -0.2635 -1.6028 31 1 3.8818 -3.2956 -3.1418 32 1 5.0568 -2.0802 -3.6993 33 1 5.3849 -4.3496 -5.1150 34 1 6.2438 -6.3422 -7.6512 35 1 5.2261 -4.1081 -0.4086 36 1 3.5587 -3.8163 -1.0017 37 1 3.4785 -3.9234 1.8481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219081839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:08 Heat of formation + Delta-G solvation = -108.890124 kcal Electronic energy + Delta-G solvation = -21010.779856 eV Core-core repulsion = 17595.357952 eV Total energy + Delta-G solvation = -3415.421905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30178 -38.85211 -37.81714 -35.87266 -34.29990 -33.80157 -31.34853 -30.94328 -29.36257 -27.92561 -26.32806 -24.21991 -21.49630 -21.27221 -20.43520 -19.23126 -17.93848 -17.62607 -17.08441 -16.21452 -16.02807 -15.49780 -15.15909 -14.80720 -14.62719 -14.23003 -13.88283 -13.62308 -13.40063 -13.10989 -12.89323 -12.72546 -12.47430 -12.18564 -11.98750 -11.64711 -11.47709 -11.32441 -11.06015 -10.88296 -10.45851 -10.23419 -10.09888 -9.99318 -9.50551 -9.23530 -8.55107 -8.05274 -7.96952 -6.43352 -3.84403 2.51776 3.01411 3.18478 3.24479 3.28613 3.76512 3.88297 4.10565 4.31249 4.51459 4.58659 4.71879 5.01562 5.06807 5.12795 5.17471 5.21143 5.25361 5.38081 5.56919 5.63014 5.74944 5.79553 5.89341 5.95027 6.17801 6.22680 6.34539 6.98341 7.09093 7.40573 7.43898 7.53126 8.03761 8.12120 8.59743 9.16115 9.52315 10.04052 10.74343 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.035559 B = 0.003637 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.231387 B = 7696.502045 C = 8047.787265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.552 6.552 4 N -0.710 5.710 5 C 0.143 3.857 6 H 0.103 0.897 7 C 0.024 3.976 8 N -0.485 5.485 9 C 0.038 3.962 10 C 0.445 3.555 11 O -0.578 6.578 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.010 3.990 22 C 0.092 3.908 23 H 0.085 0.915 24 O -0.563 6.563 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.407 0.593 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 6.512 11.383 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.430 6.430 4 N -0.362 5.362 5 C 0.037 3.963 6 H 0.121 0.879 7 C -0.105 4.105 8 N -0.210 5.210 9 C -0.094 4.094 10 C 0.230 3.770 11 O -0.462 6.462 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.118 4.118 22 C 0.032 3.968 23 H 0.103 0.897 24 O -0.368 6.368 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.242 0.758 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.311 7.600 11.687 17.340 hybrid contribution -0.510 -1.639 -0.863 1.921 sum -10.821 5.962 10.824 16.425 Atomic orbital electron populations 1.21865 0.91771 1.04775 1.04688 1.20833 0.90632 0.83512 0.75381 1.90719 1.70784 1.31436 1.50040 1.45917 1.06623 1.09026 1.74663 1.21832 0.80391 0.98057 0.96043 0.87947 1.23408 0.96542 0.95414 0.95148 1.64443 1.49675 1.03334 1.03594 1.22079 0.98129 0.98524 0.90630 1.19668 0.87599 0.85553 0.84187 1.90498 1.45453 1.67484 1.42774 1.41849 1.33323 1.33404 1.11528 1.19646 1.12701 1.11883 0.98697 0.87967 1.25260 0.98297 0.99147 0.95204 1.69610 1.37939 1.42838 1.03962 0.85917 0.80566 0.80522 0.77207 1.19933 1.20979 1.19871 1.23973 0.99676 0.96093 0.92042 1.23041 0.91025 0.91818 0.90899 0.89684 1.86348 1.41837 1.42466 1.66164 0.88919 0.88971 0.90231 0.75788 0.92949 0.89156 0.93177 0.89152 0.77514 0.91812 0.87882 0.93396 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.30 36.01 0.37 -0.86 16 2 C 0.51 5.90 7.94 -10.98 -0.09 5.81 16 3 O -0.55 -8.72 16.75 5.56 0.09 -8.62 16 4 N -0.71 -7.67 4.61 -52.49 -0.24 -7.91 16 5 C 0.14 1.76 3.30 -66.57 -0.22 1.54 16 6 H 0.10 1.35 7.56 -51.93 -0.39 0.96 16 7 C 0.02 0.33 6.46 -2.76 -0.02 0.31 16 8 N -0.49 -7.90 4.90 -231.89 -1.14 -9.04 16 9 C 0.04 0.67 5.19 -4.98 -0.03 0.65 16 10 C 0.44 10.35 7.61 -10.99 -0.08 10.27 16 11 O -0.58 -15.29 14.64 5.55 0.08 -15.20 16 12 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 13 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 14 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 17 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.01 0.15 5.66 -1.89 -0.01 0.14 16 22 C 0.09 1.07 4.35 -24.87 -0.11 0.96 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 24 O -0.56 -5.43 12.10 -35.23 -0.43 -5.85 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.41 3.79 7.86 -40.82 -0.32 3.47 16 29 H 0.05 0.70 7.56 -51.93 -0.39 0.31 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.81 7.83 -51.92 -0.41 0.40 16 32 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 33 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.10 1.74 7.10 -51.93 -0.37 1.37 16 36 H 0.05 0.68 7.81 -51.93 -0.41 0.27 16 37 H 0.39 2.36 9.12 45.56 0.42 2.78 16 LS Contribution 315.21 15.07 4.75 4.75 Total: -1.00 -33.70 315.21 -5.90 -39.59 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -4.24 Total: 13.43 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -0.42 Total: 10.90 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.71 Total: -54.85 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.25 Total: -29.68 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.70 -5.90 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219081839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.296 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds