Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47256 * 2 1 4 4 H 1.09000 * 109.46947 * 304.99816 * 3 2 1 5 5 C 1.53002 * 109.47254 * 184.99910 * 3 2 1 6 6 N 1.46500 * 109.47143 * 184.99897 * 5 3 2 7 7 C 1.34770 * 119.99822 * 180.02562 * 6 5 3 8 8 O 1.21276 * 120.00447 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.99740 * 179.97438 * 7 6 5 10 10 H 1.08999 * 110.50185 * 317.25958 * 9 7 6 11 11 C 1.54091 * 110.56060 * 80.00086 * 9 7 6 12 12 O 1.45702 * 104.00850 * 118.57442 * 11 9 7 13 13 C 1.33775 * 109.47419 * 359.97438 * 12 11 9 14 14 O 1.21509 * 123.06942 * 179.97438 * 13 12 11 15 15 N 1.34000 * 113.85758 * 0.02562 * 13 12 11 16 16 N 1.46501 * 109.47031 * 64.99762 * 3 2 1 17 17 C 1.36932 * 119.99845 * 275.00125 * 16 3 2 18 18 H 1.08002 * 120.00437 * 0.02562 * 17 16 3 19 19 C 1.38811 * 119.99901 * 179.97438 * 17 16 3 20 20 N 1.31620 * 120.00372 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99955 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99982 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99472 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00079 * 21 19 17 25 25 H 1.08995 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47275 * 300.00046 * 1 2 3 27 27 H 1.09004 * 109.46740 * 60.00080 * 1 2 3 28 28 H 1.08997 * 109.47275 * 239.99954 * 2 1 3 29 29 H 1.08998 * 109.47425 * 119.99995 * 2 1 3 30 30 H 1.08996 * 109.47152 * 305.00114 * 5 3 2 31 31 H 1.09007 * 109.46772 * 64.99908 * 5 3 2 32 32 H 0.96999 * 119.99815 * 359.97438 * 6 5 3 33 33 H 1.08999 * 110.51675 * 237.20180 * 11 9 7 34 34 H 1.08999 * 110.52393 * 359.79906 * 11 9 7 35 35 H 0.97003 * 125.55743 * 179.97438 * 15 13 12 36 36 H 0.97000 * 119.99725 * 95.00559 * 16 3 2 37 37 H 0.96993 * 120.00251 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 4.0631 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0868 8 8 6.1633 2.1486 -0.2592 9 6 5.8981 4.4750 0.0358 10 1 5.2686 5.1603 -0.5319 11 6 5.9641 4.9002 1.5154 12 8 7.3769 5.1758 1.7405 13 6 8.0590 4.9605 0.6100 14 8 9.2607 5.1164 0.5208 15 7 7.2957 4.5581 -0.4152 16 7 1.6524 2.0976 1.2518 17 6 0.4156 2.6735 1.3687 18 1 -0.2743 2.6446 0.5383 19 6 0.0481 3.2937 2.5550 20 7 -1.1405 3.8478 2.6673 21 14 1.2411 3.3431 3.9916 22 1 1.0383 2.1447 4.8448 23 1 2.6344 3.3548 3.4779 24 1 0.9990 4.5689 4.7941 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8312 0.6659 31 1 3.8499 1.0377 -1.0961 32 1 3.4410 3.5484 0.1308 33 1 5.3684 5.7978 1.6819 34 1 5.6227 4.0911 2.1611 35 1 7.6131 4.3550 -1.3090 36 1 2.2719 2.1233 1.9977 37 1 -1.3971 4.2814 3.4960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269398177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = -95.462670 kcal Electronic energy + Delta-G solvation = -21300.874535 eV Core-core repulsion = 17886.034889 eV Total energy + Delta-G solvation = -3414.839647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.97499 -39.56566 -37.34815 -37.03033 -34.87204 -34.12529 -32.50355 -30.53942 -30.23782 -28.13909 -25.08249 -23.46442 -22.59904 -22.46718 -20.72843 -20.19727 -18.50230 -18.25500 -17.57608 -17.15827 -16.28053 -15.79018 -15.70597 -14.86675 -14.68646 -14.46386 -14.25647 -14.08926 -13.69873 -13.33230 -13.12513 -13.06082 -12.72246 -12.43273 -11.71258 -11.31169 -11.12379 -11.09741 -10.92309 -10.83987 -10.54505 -10.49509 -10.41967 -10.14110 -9.62218 -9.48559 -9.13423 -9.08102 -7.49593 -5.94188 -3.31607 2.24686 2.32141 2.53588 2.93094 3.18011 3.26106 3.33473 3.38852 3.78555 4.32714 4.38316 4.41454 4.80420 4.97149 5.03924 5.11697 5.15336 5.31029 5.59175 5.73915 5.76884 5.87323 6.13376 6.26268 6.37227 6.46103 6.49023 6.56466 6.80662 6.96555 7.18425 7.41075 7.80405 7.84550 8.03129 8.23568 9.00754 9.72760 9.91522 11.23185 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.005452 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.006928 B = 5134.576991 C = 6238.174875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.110 3.890 6 N -0.707 5.707 7 C 0.498 3.502 8 O -0.530 6.530 9 C 0.076 3.924 10 H 0.130 0.870 11 C 0.053 3.947 12 O -0.323 6.323 13 C 0.651 3.349 14 O -0.522 6.522 15 N -0.709 5.709 16 N -0.747 5.747 17 C -0.246 4.246 18 H 0.095 0.905 19 C 0.009 3.991 20 N -0.928 5.928 21 Si 0.881 3.119 22 H -0.285 1.285 23 H -0.279 1.279 24 H -0.291 1.291 25 H 0.033 0.967 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.440 0.560 36 H 0.361 0.639 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.903 0.241 -6.621 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.082 0.918 5 C -0.014 4.014 6 N -0.359 5.359 7 C 0.280 3.720 8 O -0.407 6.407 9 C -0.035 4.035 10 H 0.148 0.852 11 C -0.023 4.023 12 O -0.232 6.232 13 C 0.404 3.596 14 O -0.407 6.407 15 N -0.381 5.381 16 N -0.391 5.391 17 C -0.376 4.376 18 H 0.113 0.887 19 C -0.187 4.187 20 N -0.575 5.575 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.205 1.205 24 H -0.218 1.218 25 H 0.052 0.948 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.250 0.750 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.283 0.717 36 H 0.194 0.806 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.868 -0.119 -6.424 11.775 hybrid contribution 0.243 0.125 0.740 0.789 sum 10.111 0.006 -5.684 11.599 Atomic orbital electron populations 1.21779 0.95095 0.99824 1.03800 1.22040 0.97459 0.97711 1.00184 1.20557 0.89510 0.93178 0.90896 0.91778 1.21819 0.95821 0.81946 1.01791 1.46005 1.06569 1.11475 1.71879 1.20476 0.83172 0.90251 0.78065 1.90752 1.55949 1.45444 1.48509 1.22327 0.86259 0.97077 0.97801 0.85240 1.24314 0.79931 1.04726 0.93305 1.87300 1.21014 1.82040 1.32896 1.18430 0.85664 0.76296 0.79210 1.91079 1.09868 1.57336 1.82375 1.45627 1.06418 1.71529 1.14573 1.42831 1.16897 1.67690 1.11642 1.19038 0.90655 1.27945 0.99958 0.88717 1.24671 0.96343 1.00249 0.97474 1.69682 1.19266 1.41783 1.26795 0.86643 0.80772 0.77505 0.83916 1.21168 1.20514 1.21759 0.94794 0.89328 0.93840 0.93517 0.92619 0.91561 0.91091 0.75037 0.85803 0.86975 0.71679 0.80569 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.18 37.16 0.34 -2.09 16 2 C -0.13 -1.97 5.61 -26.73 -0.15 -2.12 16 3 C 0.17 2.56 2.59 -67.92 -0.18 2.38 16 4 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.11 1.46 5.23 -4.04 -0.02 1.44 16 6 N -0.71 -8.45 5.39 -60.29 -0.32 -8.77 16 7 C 0.50 6.05 6.96 -10.98 -0.08 5.97 16 8 O -0.53 -8.47 16.56 5.56 0.09 -8.37 16 9 C 0.08 0.69 4.18 -68.19 -0.28 0.40 16 10 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 11 C 0.05 0.49 7.87 37.73 0.30 0.79 16 12 O -0.32 -4.23 11.09 -37.84 -0.42 -4.65 16 13 C 0.65 9.20 9.16 53.71 0.49 9.70 16 14 O -0.52 -9.24 18.04 -19.12 -0.34 -9.58 16 15 N -0.71 -7.61 5.63 -59.36 -0.33 -7.94 16 16 N -0.75 -14.10 4.31 -53.42 -0.23 -14.33 16 17 C -0.25 -5.78 8.24 -15.06 -0.12 -5.90 16 18 H 0.10 2.43 7.55 -52.49 -0.40 2.03 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -26.30 13.97 55.49 0.78 -25.53 16 21 Si 0.88 19.55 27.73 -169.99 -4.71 14.83 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -5.53 6.52 56.52 0.37 -5.16 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.09 1.78 5.99 -51.93 -0.31 1.47 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.41 4.68 8.14 -40.82 -0.33 4.35 16 33 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.09 7.72 -51.93 -0.40 0.69 16 35 H 0.44 4.04 8.96 -40.82 -0.37 3.67 16 36 H 0.36 6.90 5.66 -40.82 -0.23 6.67 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -32.13 313.51 -5.58 -37.71 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.01 Total: 11.19 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 0.20 Total: 10.71 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.11 Total: -56.56 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.67 Total: -22.61 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.13 -5.58 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269398177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.755 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds