Wall clock time and date at job start Mon Mar 30 2020 01:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47626 * 270.00467 * 3 2 1 5 5 H 1.48501 * 109.47016 * 30.00612 * 3 2 1 6 6 H 1.48503 * 109.47161 * 150.00209 * 3 2 1 7 7 C 1.38953 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99677 * 359.97438 * 7 2 1 9 9 N 1.37091 * 120.00290 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00116 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99905 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46729 * 179.97438 * 12 10 9 14 14 C 1.34783 * 119.99924 * 179.97438 * 13 12 10 15 15 O 1.21585 * 119.99664 * 5.14436 * 14 13 12 16 16 N 1.34773 * 119.99931 * 185.14967 * 14 13 12 17 17 C 1.44454 * 118.51551 * 355.19644 * 16 14 13 18 18 C 1.54878 * 109.32765 * 268.95655 * 17 16 14 19 19 C 1.47680 * 109.67868 * 290.10207 * 18 17 16 20 20 O 1.42561 * 113.66369 * 60.81057 * 19 18 17 21 21 C 1.40530 * 113.53816 * 272.22987 * 20 19 18 22 22 C 1.48183 * 118.50916 * 175.22294 * 16 14 13 23 23 H 0.96997 * 120.00038 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00418 * 359.97438 * 9 7 2 25 25 H 1.08994 * 109.46944 * 60.00028 * 12 10 9 26 26 H 1.08994 * 109.47067 * 299.99621 * 12 10 9 27 27 H 0.96999 * 120.00320 * 0.02562 * 13 12 10 28 28 H 1.09002 * 109.49688 * 148.99999 * 17 16 14 29 29 H 1.09003 * 109.49529 * 28.91165 * 17 16 14 30 30 H 1.09004 * 109.43507 * 170.03589 * 18 17 16 31 31 H 1.09003 * 109.39848 * 50.14670 * 18 17 16 32 32 H 1.08994 * 108.65027 * 299.72246 * 19 18 17 33 33 H 1.09003 * 108.64210 * 181.88547 * 19 18 17 34 34 H 1.08995 * 109.40589 * 215.40794 * 21 20 19 35 35 H 1.09002 * 109.40082 * 335.16919 * 21 20 19 36 36 H 1.08997 * 109.23202 * 259.06211 * 22 16 14 37 37 H 1.09004 * 109.23522 * 18.47230 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0001 12 6 5.5608 -2.3705 -0.0022 13 7 6.0491 -3.7517 -0.0014 14 6 7.3742 -3.9980 -0.0027 15 8 8.1636 -3.0779 0.0898 16 7 7.8242 -5.2642 -0.1067 17 6 6.8607 -6.3404 -0.1089 18 6 6.6317 -6.8264 1.3437 19 6 7.8389 -7.5238 1.8309 20 8 9.0036 -6.7021 1.8555 21 6 9.7141 -6.6990 0.6431 22 6 9.2850 -5.4892 -0.2129 23 1 -0.4850 0.8400 0.0004 24 1 3.8649 -0.3633 -0.0014 25 1 5.9248 -1.8563 0.8872 26 1 5.9234 -1.8571 -0.8927 27 1 5.4188 -4.4890 -0.0006 28 1 7.2381 -7.1653 -0.7133 29 1 5.9187 -5.9845 -0.5262 30 1 5.7832 -7.5102 1.3679 31 1 6.4248 -5.9689 1.9840 32 1 8.0307 -8.3809 1.1854 33 1 7.6476 -7.8875 2.8405 34 1 10.7824 -6.6359 0.8495 35 1 9.5053 -7.6201 0.0988 36 1 9.5445 -5.6764 -1.2549 37 1 9.8115 -4.5999 0.1339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323102122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:26 Heat of formation + Delta-G solvation = -91.116391 kcal Electronic energy + Delta-G solvation = -21228.011220 eV Core-core repulsion = 17813.360042 eV Total energy + Delta-G solvation = -3414.651178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.61910 -38.97318 -38.22143 -35.41346 -34.58417 -33.81936 -32.97742 -31.79273 -29.38170 -27.35924 -26.53759 -24.37847 -22.50823 -22.05294 -19.73642 -19.56046 -18.83102 -17.90842 -17.26641 -16.51875 -15.94021 -15.69680 -15.41230 -15.01346 -14.95657 -14.38220 -14.19413 -13.82917 -13.59601 -13.33794 -13.07844 -12.84861 -12.48431 -12.16635 -12.11468 -11.93479 -11.76177 -11.22924 -11.14458 -10.92535 -10.63277 -10.06085 -9.96614 -9.89325 -9.69137 -8.96258 -8.75886 -8.49137 -8.29657 -6.40376 -3.92855 2.65410 3.00830 3.05477 3.13400 3.31647 3.58469 3.61244 4.00250 4.04783 4.50026 4.57139 4.60163 4.76115 4.85372 5.00578 5.12653 5.14959 5.19184 5.32587 5.47238 5.55939 5.59098 5.66484 5.76165 5.82883 5.88669 5.98093 6.51629 6.67659 6.94582 7.05216 7.45584 8.00693 8.12107 8.45052 8.73686 8.82164 9.30531 9.64328 10.71806 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.038053 B = 0.003868 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.643538 B = 7236.474943 C = 7704.533428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.576 5.576 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.124 3.876 13 N -0.726 5.726 14 C 0.706 3.294 15 O -0.596 6.596 16 N -0.621 5.621 17 C 0.108 3.892 18 C -0.178 4.178 19 C 0.064 3.936 20 O -0.366 6.366 21 C 0.049 3.951 22 C 0.101 3.899 23 H 0.275 0.725 24 H 0.375 0.625 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.408 0.592 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.160 -12.765 -0.071 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.225 3.775 11 O -0.465 6.465 12 C -0.004 4.004 13 N -0.385 5.385 14 C 0.407 3.593 15 O -0.475 6.475 16 N -0.359 5.359 17 C -0.017 4.017 18 C -0.217 4.217 19 C -0.012 4.012 20 O -0.283 6.283 21 C -0.029 4.029 22 C -0.022 4.022 23 H 0.086 0.914 24 H 0.208 0.792 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.248 0.752 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.142 -12.571 0.134 21.258 hybrid contribution 0.016 0.889 -0.238 0.921 sum 17.158 -11.682 -0.104 20.758 Atomic orbital electron populations 1.69617 1.05716 1.27810 1.48244 1.25061 0.95527 0.98168 0.97124 0.86673 0.79958 0.83748 0.79144 1.19393 1.19985 1.19174 1.19438 0.78969 0.96785 1.48654 0.86100 1.42112 1.07679 1.06142 1.65448 1.19660 0.88090 0.84856 0.84869 1.90522 1.69290 1.30943 1.55735 1.20812 0.93311 0.83109 1.03217 1.44963 1.05325 1.09252 1.78985 1.15840 0.82588 0.83155 0.77748 1.90872 1.55179 1.43233 1.58224 1.46802 1.06401 1.04566 1.78117 1.21523 0.93170 0.90609 0.96374 1.22119 0.99029 1.02752 0.97794 1.21525 0.85809 0.91876 1.02024 1.87523 1.38012 1.69685 1.33108 1.22926 0.97042 0.96953 0.85971 1.22509 0.79554 1.00780 0.99364 0.91395 0.79214 0.89835 0.89991 0.75236 0.90457 0.89690 0.89134 0.90285 0.93279 0.89769 0.88731 0.92764 0.91487 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.01 13.96 55.50 0.77 -24.24 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.11 27.73 -169.99 -4.71 14.39 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 9 N -0.58 -13.51 5.09 -10.96 -0.06 -13.56 16 10 C 0.44 9.78 7.85 -10.98 -0.09 9.69 16 11 O -0.58 -14.66 15.24 5.55 0.08 -14.57 16 12 C 0.12 2.25 6.16 -5.19 -0.03 2.21 16 13 N -0.73 -12.34 5.36 -66.42 -0.36 -12.69 16 14 C 0.71 11.85 8.21 -86.92 -0.71 11.13 16 15 O -0.60 -11.79 15.63 5.29 0.08 -11.71 16 16 N -0.62 -8.05 2.55 -177.66 -0.45 -8.51 16 17 C 0.11 1.11 5.28 -4.14 -0.02 1.09 16 18 C -0.18 -1.73 6.03 -28.31 -0.17 -1.90 16 19 C 0.06 0.57 6.04 34.59 0.21 0.77 16 20 O -0.37 -4.11 10.23 -34.10 -0.35 -4.46 16 21 C 0.05 0.42 6.50 37.83 0.25 0.66 16 22 C 0.10 1.08 6.58 -2.44 -0.02 1.06 16 23 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 25 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.41 6.76 4.98 -40.82 -0.20 6.56 16 28 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.08 0.94 6.00 -51.93 -0.31 0.63 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.33 7.28 -51.93 -0.38 -0.05 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.35 7.21 -51.93 -0.37 -0.03 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.25 6.96 -51.93 -0.36 0.89 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -33.94 303.82 -6.04 -39.98 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -4.80 Total: 13.65 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: -0.83 Total: 17.14 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.09 Total: -59.00 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.18 Total: -30.74 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.94 -6.04 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323102122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.134 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds