Wall clock time and date at job start Mon Mar 30 2020 00:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47169 * 271.86041 * 3 2 1 5 5 H 1.48495 * 109.47432 * 31.86591 * 3 2 1 6 6 H 1.48499 * 109.46944 * 151.86563 * 3 2 1 7 7 C 1.38815 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99916 * 342.37475 * 7 2 1 9 9 N 1.36932 * 120.00043 * 162.36715 * 7 2 1 10 10 C 1.46926 * 120.62727 * 148.68663 * 9 7 2 11 11 C 1.53196 * 108.77126 * 126.67049 * 10 9 7 12 12 C 1.53039 * 109.31474 * 54.63671 * 11 10 9 13 13 C 1.53045 * 109.53695 * 298.63618 * 12 11 10 14 14 C 1.53002 * 109.52305 * 181.33164 * 13 12 11 15 15 O 1.42902 * 109.46864 * 175.33017 * 14 13 12 16 16 N 1.46500 * 109.49465 * 301.41157 * 13 12 11 17 17 C 1.34780 * 120.00099 * 301.67035 * 16 13 12 18 18 O 1.21350 * 119.99691 * 354.74454 * 17 16 13 19 19 C 1.49453 * 120.00016 * 174.74210 * 17 16 13 20 20 N 1.34780 * 119.99748 * 180.02562 * 19 17 16 21 21 O 1.21345 * 120.00137 * 359.97438 * 19 17 16 22 22 C 1.46924 * 120.63225 * 328.97425 * 9 7 2 23 23 H 0.97004 * 120.00307 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.59280 * 246.45390 * 10 9 7 25 25 H 1.08996 * 109.58858 * 6.88890 * 10 9 7 26 26 H 1.08994 * 109.50336 * 294.68164 * 11 10 9 27 27 H 1.09004 * 109.49742 * 174.58670 * 11 10 9 28 28 H 1.09001 * 109.46423 * 178.60980 * 12 11 10 29 29 H 1.09003 * 109.46307 * 58.65486 * 12 11 10 30 30 H 1.08994 * 109.47148 * 295.33274 * 14 13 12 31 31 H 1.09002 * 109.46922 * 55.33251 * 14 13 12 32 32 H 0.96697 * 113.99547 * 180.02562 * 15 14 13 33 33 H 0.96997 * 120.00153 * 121.67267 * 16 13 12 34 34 H 0.97001 * 120.00168 * 359.97438 * 20 19 17 35 35 H 0.96994 * 119.99747 * 180.02562 * 20 19 17 36 36 H 1.08997 * 109.58832 * 353.11835 * 22 9 7 37 37 H 1.09006 * 109.59024 * 113.39910 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4583 2.0691 -1.3993 5 1 1.4680 2.6410 0.7391 6 1 3.5669 1.4291 0.6602 7 6 2.0102 -1.2022 -0.0005 8 1 1.5082 -2.1157 0.2823 9 7 3.3313 -1.2299 -0.3598 10 6 4.2478 -2.2133 0.2332 11 6 4.9581 -2.9681 -0.8949 12 6 5.6344 -1.9624 -1.8293 13 6 4.5752 -1.0492 -2.4512 14 6 5.2479 -0.0655 -3.4107 15 8 4.2489 0.7134 -4.0721 16 7 3.6010 -1.8601 -3.1858 17 6 4.0107 -2.6601 -4.1901 18 8 5.1697 -2.6380 -4.5491 19 6 3.0377 -3.5744 -4.8616 20 7 3.4476 -4.3748 -5.8656 21 8 1.8789 -3.5969 -4.5023 22 6 3.8606 -0.2728 -1.3408 23 1 -0.4851 0.8401 0.0004 24 1 4.9852 -1.7001 0.8503 25 1 3.6829 -2.9171 0.8445 26 1 4.2298 -3.5534 -1.4561 27 1 5.7103 -3.6331 -0.4704 28 1 6.1613 -2.4978 -2.6191 29 1 6.3449 -1.3607 -1.2625 30 1 5.9103 0.5937 -2.8498 31 1 5.8267 -0.6181 -4.1508 32 1 4.6042 1.3597 -4.6974 33 1 2.6611 -1.8212 -2.9495 34 1 4.3740 -4.3572 -6.1525 35 1 2.8161 -4.9679 -6.3016 36 1 3.0402 0.3039 -1.7680 37 1 4.5645 0.4005 -0.8515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501345821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:43 Heat of formation + Delta-G solvation = -122.590035 kcal Electronic energy + Delta-G solvation = -22805.534332 eV Core-core repulsion = 19389.518355 eV Total energy + Delta-G solvation = -3416.015977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96486 -40.32768 -38.81209 -37.47297 -35.70080 -34.73280 -34.14426 -32.61802 -31.78150 -27.31839 -26.88498 -26.14800 -24.20851 -22.46600 -21.58859 -20.32755 -19.76370 -18.89006 -18.28192 -18.02471 -17.38138 -16.93418 -16.82894 -16.41844 -15.77471 -15.49349 -15.34664 -15.21372 -15.00010 -14.67278 -14.32874 -14.01966 -13.80481 -13.50675 -13.24839 -12.80549 -12.72124 -12.45404 -12.22176 -11.89034 -11.77025 -11.49847 -11.34814 -11.04878 -10.89724 -10.74102 -10.42496 -10.05213 -8.88448 -8.15355 -5.52864 0.40374 1.34639 1.39900 1.49064 1.55759 2.20418 2.42346 2.88341 3.05855 3.22120 3.35016 3.62761 3.87679 3.94066 4.16763 4.23531 4.40911 4.50415 4.52917 4.71597 4.75308 4.86341 4.92431 5.00916 5.10707 5.19689 5.40940 5.47365 5.61780 5.88947 5.98880 6.15884 6.40698 6.82633 6.91458 6.92552 7.08376 7.60865 8.01869 9.04134 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.018699 B = 0.008011 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.061958 B = 3494.556524 C = 3667.350487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.030 4.030 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.313 1.313 6 H -0.254 1.254 7 C -0.248 4.248 8 H 0.048 0.952 9 N -0.615 5.615 10 C 0.140 3.860 11 C -0.123 4.123 12 C -0.115 4.115 13 C 0.157 3.843 14 C 0.068 3.932 15 O -0.587 6.587 16 N -0.663 5.663 17 C 0.509 3.491 18 O -0.535 6.535 19 C 0.507 3.493 20 N -0.797 5.797 21 O -0.558 6.558 22 C 0.127 3.873 23 H 0.261 0.739 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.394 0.606 33 H 0.407 0.593 34 H 0.424 0.576 35 H 0.421 0.579 36 H 0.056 0.944 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.004 -4.357 -10.731 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.225 4.225 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.242 1.242 6 H -0.178 1.178 7 C -0.377 4.377 8 H 0.066 0.934 9 N -0.339 5.339 10 C 0.016 3.984 11 C -0.162 4.162 12 C -0.153 4.153 13 C 0.070 3.930 14 C -0.011 4.011 15 O -0.395 6.395 16 N -0.313 5.313 17 C 0.289 3.711 18 O -0.414 6.414 19 C 0.286 3.714 20 N -0.364 5.364 21 O -0.435 6.435 22 C 0.002 3.998 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.242 0.758 34 H 0.257 0.743 35 H 0.255 0.745 36 H 0.075 0.925 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.620 -4.528 -10.210 19.203 hybrid contribution -0.459 0.985 -0.330 1.136 sum 15.161 -3.543 -10.540 18.802 Atomic orbital electron populations 1.69953 1.07504 1.27132 1.55447 1.25999 0.95796 1.00995 0.99707 0.85939 0.78911 0.80265 0.77641 1.20164 1.24208 1.17839 1.18751 0.85327 0.92911 1.40741 0.93387 1.44411 1.05971 1.38092 1.45408 1.21188 0.92030 0.91048 0.94158 1.21852 0.99369 0.97782 0.97175 1.21765 0.96458 0.97719 0.99391 1.21230 0.89581 0.91012 0.91186 1.22642 0.90101 0.92850 0.95534 1.86533 1.36416 1.55124 1.61426 1.45769 1.12525 1.40909 1.32062 1.20005 0.88204 0.81689 0.81166 1.90615 1.18093 1.68563 1.64101 1.20301 0.87517 0.81954 0.81631 1.43299 1.16993 1.41331 1.34771 1.90869 1.20035 1.68250 1.64391 1.21582 0.97284 0.91965 0.89009 0.93049 0.93820 0.92841 0.94184 0.89050 0.89611 0.89021 0.90942 0.90723 0.75710 0.75770 0.74341 0.74506 0.92533 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.97 13.97 21.65 0.30 -60.67 16 2 C -0.03 -1.75 5.26 84.86 0.45 -1.30 16 3 Si 0.94 46.77 24.34 68.60 1.67 48.44 16 4 H -0.28 -13.25 6.65 99.48 0.66 -12.59 16 5 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 6 H -0.25 -11.71 6.59 99.48 0.66 -11.06 16 7 C -0.25 -14.00 10.02 84.03 0.84 -13.16 16 8 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 9 N -0.61 -28.07 2.64 -699.10 -1.84 -29.91 16 10 C 0.14 5.19 6.52 86.36 0.56 5.75 16 11 C -0.12 -3.75 5.93 30.67 0.18 -3.56 16 12 C -0.12 -3.25 4.45 30.62 0.14 -3.12 16 13 C 0.16 5.30 0.45 3.68 0.00 5.30 16 14 C 0.07 1.90 5.67 71.98 0.41 2.31 16 15 O -0.59 -17.86 13.06 -148.98 -1.95 -19.80 16 16 N -0.66 -24.33 3.94 -423.87 -1.67 -26.00 16 17 C 0.51 16.33 7.26 87.27 0.63 16.96 16 18 O -0.53 -15.94 12.79 -3.25 -0.04 -15.98 16 19 C 0.51 15.44 8.16 87.27 0.71 16.16 16 20 N -0.80 -14.96 8.87 -174.50 -1.55 -16.51 16 21 O -0.56 -21.99 17.32 -3.23 -0.06 -22.05 16 22 C 0.13 5.25 2.74 86.36 0.24 5.48 16 23 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 26 H 0.04 1.39 7.50 -2.39 -0.02 1.37 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.09 2.32 6.27 -2.39 -0.01 2.31 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.99 6.27 -2.39 -0.01 1.98 16 32 H 0.39 7.67 9.12 -74.06 -0.68 7.00 16 33 H 0.41 17.92 7.95 -92.71 -0.74 17.18 16 34 H 0.42 5.99 8.30 -92.71 -0.77 5.22 16 35 H 0.42 6.02 8.93 -92.71 -0.83 5.20 16 36 H 0.06 2.71 4.62 -2.39 -0.01 2.70 16 37 H 0.05 2.04 6.94 -2.38 -0.02 2.03 16 Total: -1.00 -74.92 296.51 -2.92 -77.84 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -1.95 Total: 33.82 kcal Atomic # 6 Polarization: 26.66 SS G_CDS: 4.16 Total: 30.82 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -4.76 Total: -133.09 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -2.04 Total: -57.83 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.67 Total: 48.44 kcal Total: -74.92 -2.92 -77.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501345821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.746 kcal (2) G-P(sol) polarization free energy of solvation -74.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds