Wall clock time and date at job start Mon Mar 30 2020 00:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99466 * 2 1 4 4 H 1.48500 * 109.47328 * 239.99682 * 3 2 1 5 5 H 1.48503 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47116 * 120.00176 * 3 2 1 7 7 C 1.38807 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99717 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00216 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47091 * 325.00462 * 10 9 7 12 12 C 1.52996 * 109.46664 * 85.00315 * 10 9 7 13 13 O 1.42894 * 109.47465 * 65.00296 * 12 10 9 14 14 C 1.53003 * 109.47149 * 205.00210 * 10 9 7 15 15 N 1.46497 * 109.47283 * 55.00104 * 14 10 9 16 16 C 1.34770 * 120.00075 * 180.27286 * 15 14 10 17 17 O 1.21278 * 120.00310 * 354.71507 * 16 15 14 18 18 C 1.50701 * 120.00067 * 174.71404 * 16 15 14 19 19 C 1.50704 * 115.55115 * 279.08573 * 18 16 15 20 20 N 1.34779 * 119.99988 * 301.32244 * 19 18 16 21 21 O 1.21285 * 119.99858 * 121.31269 * 19 18 16 22 22 C 1.53004 * 117.49934 * 133.38056 * 18 16 15 23 23 C 1.52999 * 117.49942 * 64.75893 * 18 16 15 24 24 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00011 * 0.02562 * 9 7 2 26 26 H 1.09005 * 109.47212 * 185.00119 * 12 10 9 27 27 H 1.09004 * 109.47346 * 304.99535 * 12 10 9 28 28 H 0.96702 * 114.00314 * 179.97438 * 13 12 10 29 29 H 1.08996 * 109.46949 * 295.00112 * 14 10 9 30 30 H 1.09001 * 109.46694 * 175.00293 * 14 10 9 31 31 H 0.97004 * 119.99549 * 359.97438 * 15 14 10 32 32 H 0.97001 * 119.99749 * 355.02820 * 20 19 18 33 33 H 0.96995 * 119.99540 * 175.02997 * 20 19 18 34 34 H 1.08998 * 117.50087 * 359.97438 * 22 18 16 35 35 H 1.09003 * 117.49777 * 145.02072 * 22 18 16 36 36 H 1.09006 * 117.49553 * 214.97925 * 23 18 16 37 37 H 1.09003 * 117.50088 * 359.97231 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9690 -3.5504 -0.5888 12 6 2.4221 -4.0354 1.4376 13 8 1.2279 -4.2885 2.1804 14 6 1.1812 -4.7521 -0.6091 15 7 0.7346 -4.3355 -1.9407 16 6 -0.0592 -5.1451 -2.6692 17 8 -0.3258 -6.2570 -2.2649 18 6 -0.6157 -4.6689 -3.9862 19 6 -1.8342 -3.7867 -3.8961 20 7 -2.9516 -4.2404 -3.2942 21 8 -1.8093 -2.6685 -4.3651 22 6 -0.5192 -5.6213 -5.1798 23 6 0.3800 -4.3853 -5.1127 24 1 -0.4850 0.8400 -0.0004 25 1 0.3558 -2.3880 -0.0002 26 1 3.0427 -4.9316 1.4312 27 1 2.9717 -3.2162 1.9012 28 1 1.3830 -4.5352 3.1024 29 1 0.3137 -4.9200 0.0290 30 1 1.7562 -5.6745 -0.6908 31 1 1.0068 -3.4750 -2.2963 32 1 -2.9965 -5.1581 -2.9833 33 1 -3.7107 -3.6491 -3.1720 34 1 -0.0529 -6.5922 -5.0125 35 1 -1.3373 -5.6100 -5.9000 36 1 0.1535 -3.5608 -5.7889 37 1 1.4377 -4.5428 -4.9012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571438113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:00 Heat of formation + Delta-G solvation = -87.229047 kcal Electronic energy + Delta-G solvation = -21460.649119 eV Core-core repulsion = 18046.166509 eV Total energy + Delta-G solvation = -3414.482610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46039 -38.70141 -37.18403 -35.89783 -34.91153 -33.52657 -33.43824 -31.34032 -28.42449 -26.19984 -24.55522 -23.59808 -22.52668 -21.58172 -20.12840 -19.30263 -17.99561 -17.45393 -16.97307 -16.61331 -15.91149 -15.80317 -15.16573 -14.93386 -14.32860 -14.17948 -13.91982 -13.62050 -13.39068 -13.19771 -12.83777 -12.78435 -12.00091 -11.72057 -11.46469 -11.15501 -10.87116 -10.82872 -10.72485 -10.54408 -10.12256 -10.04905 -9.77261 -9.59547 -9.53070 -9.37495 -8.96074 -8.66907 -7.02590 -5.78604 -3.09654 2.44018 2.80468 3.23664 3.41900 3.46182 3.46816 3.48412 3.82314 4.54574 4.65595 4.72678 4.83952 4.90756 4.98964 5.38470 5.46538 5.50020 5.55530 5.58538 5.74918 5.85576 5.99439 6.00321 6.01786 6.32301 6.48707 6.69830 6.81473 6.84406 7.36577 7.63612 7.84574 8.18034 8.31434 8.37450 8.44082 9.49883 10.04092 10.40082 11.42676 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.006437 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.001162 B = 4348.781307 C = 5440.838743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.561 6.561 14 C 0.117 3.883 15 N -0.701 5.701 16 C 0.553 3.447 17 O -0.545 6.545 18 C -0.195 4.195 19 C 0.566 3.434 20 N -0.846 5.846 21 O -0.525 6.525 22 C -0.130 4.130 23 C -0.133 4.133 24 H 0.257 0.743 25 H 0.388 0.612 26 H 0.027 0.973 27 H 0.049 0.951 28 H 0.364 0.636 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.413 0.587 32 H 0.405 0.595 33 H 0.405 0.595 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -12.461 -5.953 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.007 4.007 15 N -0.351 5.351 16 C 0.337 3.663 17 O -0.423 6.423 18 C -0.202 4.202 19 C 0.348 3.652 20 N -0.409 5.409 21 O -0.400 6.400 22 C -0.167 4.167 23 C -0.170 4.170 24 H 0.067 0.933 25 H 0.223 0.777 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.209 0.791 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.250 0.750 32 H 0.234 0.766 33 H 0.236 0.764 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.014 -12.212 -6.586 13.875 hybrid contribution 0.247 1.104 0.916 1.455 sum 0.261 -11.108 -5.671 12.475 Atomic orbital electron populations 1.69659 1.05098 1.25905 1.56275 1.24752 0.95444 0.97678 1.02368 0.86298 0.78542 0.83681 0.77746 1.21195 1.21686 1.21358 1.19136 0.90841 0.84024 1.44368 0.91248 1.42343 1.05994 0.99009 1.88036 1.20590 0.95046 0.87020 0.91954 0.91614 1.23041 0.86485 0.97274 0.95382 1.86562 1.32212 1.91893 1.25726 1.21616 0.99683 0.97111 0.82257 1.45990 1.49390 1.21906 1.17823 1.18965 0.78759 0.84765 0.83860 1.90673 1.60252 1.19974 1.71413 1.21453 1.00062 1.06324 0.92312 1.18926 0.82974 0.85983 0.77315 1.43699 1.17085 1.17403 1.62727 1.90791 1.83135 1.19450 1.46577 1.23026 1.02685 0.95444 0.95574 1.23103 0.96420 0.99890 0.97588 0.93343 0.77727 0.95530 0.93251 0.79150 0.90539 0.91863 0.74963 0.76646 0.76389 0.87143 0.87606 0.86684 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.82 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.74 9.93 -15.06 -0.15 -6.89 16 8 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.71 -17.15 4.51 -53.43 -0.24 -17.39 16 10 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 11 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 12 C 0.06 1.02 6.85 37.16 0.25 1.28 16 13 O -0.56 -9.88 12.64 -35.23 -0.45 -10.33 16 14 C 0.12 2.06 5.12 -4.04 -0.02 2.04 16 15 N -0.70 -12.14 5.39 -60.30 -0.32 -12.47 16 16 C 0.55 9.16 6.96 -10.99 -0.08 9.08 16 17 O -0.54 -9.98 17.02 5.56 0.09 -9.88 16 18 C -0.19 -2.79 2.26 -156.81 -0.35 -3.15 16 19 C 0.57 9.06 7.39 -10.98 -0.08 8.98 16 20 N -0.85 -10.72 8.86 31.22 0.28 -10.44 16 21 O -0.52 -10.41 17.38 5.55 0.10 -10.32 16 22 C -0.13 -1.41 9.87 -26.73 -0.26 -1.67 16 23 C -0.13 -1.60 9.75 -26.73 -0.26 -1.86 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.39 10.45 7.80 -40.82 -0.32 10.13 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.36 4.59 9.12 45.56 0.42 5.01 16 29 H 0.08 1.50 7.39 -51.93 -0.38 1.12 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.41 7.62 8.14 -40.82 -0.33 7.29 16 32 H 0.40 4.42 8.83 -40.82 -0.36 4.06 16 33 H 0.40 4.61 8.93 -40.82 -0.36 4.24 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.11 1.41 7.88 -51.93 -0.41 1.00 16 37 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -34.45 327.35 -5.40 -39.85 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -4.26 Total: 25.48 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -1.24 Total: 10.51 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: 0.44 Total: -67.39 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.25 Total: -30.53 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.45 -5.40 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571438113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.375 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds