Wall clock time and date at job start Mon Mar 30 2020 01:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47624 * 269.99879 * 3 2 1 5 5 H 1.48503 * 109.47278 * 29.99957 * 3 2 1 6 6 H 1.48505 * 109.47022 * 149.99952 * 3 2 1 7 7 C 1.37878 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99814 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.91369 * 297.54592 * 9 7 2 11 11 C 1.55448 * 111.11612 * 173.55627 * 9 7 2 12 12 C 1.54321 * 102.96961 * 206.45980 * 11 9 7 13 13 N 1.47026 * 107.26791 * 22.19024 * 12 11 9 14 14 C 1.34780 * 125.64285 * 181.07596 * 13 12 11 15 15 O 1.21588 * 119.99369 * 179.97438 * 14 13 12 16 16 N 1.34771 * 120.00233 * 359.97438 * 14 13 12 17 17 C 1.46502 * 120.00012 * 179.97438 * 16 14 13 18 18 H 1.09002 * 110.39185 * 34.29727 * 17 16 14 19 19 C 1.54642 * 110.43641 * 156.70981 * 17 16 14 20 20 N 1.49121 * 102.73015 * 96.64409 * 19 17 16 21 21 O 1.47731 * 103.97061 * 37.67492 * 20 19 17 22 22 C 1.43966 * 106.21145 * 319.72152 * 21 20 19 23 23 C 1.47419 * 108.70576 * 1.06162 * 13 12 11 24 24 H 0.97004 * 120.00000 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00301 * 62.45375 * 10 9 7 26 26 H 1.08998 * 110.70855 * 88.08784 * 11 9 7 27 27 H 1.08998 * 110.85957 * 324.90400 * 11 9 7 28 28 H 1.08998 * 109.88101 * 262.77542 * 12 11 9 29 29 H 1.08997 * 110.01327 * 141.67909 * 12 11 9 30 30 H 0.97000 * 120.00439 * 359.97438 * 16 14 13 31 31 H 1.09001 * 110.72948 * 214.95917 * 19 17 16 32 32 H 1.08994 * 110.72888 * 338.26720 * 19 17 16 33 33 H 1.00898 * 110.97046 * 157.07097 * 20 19 17 34 34 H 1.08994 * 110.08528 * 266.09016 * 22 21 20 35 35 H 1.08996 * 110.12837 * 144.55202 * 22 21 20 36 36 H 1.09002 * 110.36926 * 94.70918 * 23 13 12 37 37 H 1.08995 * 110.36556 * 216.92202 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4608 -2.6319 1.1838 11 6 2.2188 -3.7047 -0.1616 12 6 1.3242 -4.7824 -0.8093 13 7 0.2045 -4.0866 -1.4603 14 6 -0.8102 -4.6783 -2.1214 15 8 -1.6864 -4.0004 -2.6225 16 7 -0.8535 -6.0212 -2.2269 17 6 -1.9568 -6.6642 -2.9450 18 1 -2.2766 -6.0450 -3.7831 19 6 -1.5338 -8.0668 -3.4404 20 7 -2.0649 -8.9654 -2.3754 21 8 -3.3566 -8.3528 -2.0032 22 6 -3.1378 -6.9299 -1.9907 23 6 0.3752 -2.6348 -1.2700 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2256 -1.9571 1.2763 26 1 2.5838 -4.0392 0.8095 27 1 3.0509 -3.4489 -0.8175 28 1 0.9451 -5.4590 -0.0433 29 1 1.8932 -5.3435 -1.5506 30 1 -0.1544 -6.5619 -1.8274 31 1 -1.9954 -8.2918 -4.4018 32 1 -0.4484 -8.1419 -3.5052 33 1 -2.1967 -9.9023 -2.7261 34 1 -2.8866 -6.5987 -0.9831 35 1 -4.0285 -6.4103 -2.3439 36 1 0.8830 -2.1966 -2.1293 37 1 -0.5919 -2.1559 -1.1171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:43 Heat of formation + Delta-G solvation = -88.005123 kcal Electronic energy + Delta-G solvation = -21656.811148 eV Core-core repulsion = 18242.294884 eV Total energy + Delta-G solvation = -3414.516263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41669 -39.84508 -38.77837 -36.03835 -35.44833 -34.22166 -32.79486 -31.87399 -30.23957 -29.38770 -26.87970 -25.11089 -24.29974 -22.44278 -21.45334 -21.09697 -19.31853 -18.90522 -18.09317 -17.74913 -17.01585 -16.86041 -16.33364 -16.19444 -15.99156 -15.27484 -15.00121 -14.71609 -14.63229 -14.37866 -13.80905 -13.58630 -13.50330 -13.46280 -13.20256 -12.84614 -12.76748 -12.50563 -12.32585 -12.23007 -12.07061 -11.73571 -11.32218 -11.16599 -10.65449 -10.38662 -10.28335 -9.96167 -9.34879 -8.23271 -6.40692 1.42862 1.45244 1.54801 1.60165 1.92871 2.12796 2.39492 3.01407 3.03755 3.34684 3.46287 3.79228 3.80850 4.07211 4.09774 4.20095 4.33147 4.35711 4.57209 4.63168 4.68767 4.74367 4.78276 5.08551 5.12084 5.27260 5.29549 5.39350 5.47452 5.54699 5.77197 5.81369 6.05705 6.16781 6.66947 7.03511 7.28813 7.36290 7.53479 8.81886 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.039684 B = 0.004322 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.408623 B = 6476.723088 C = 6692.585964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.588 6.588 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.632 5.632 14 C 0.712 3.288 15 O -0.641 6.641 16 N -0.718 5.718 17 C 0.140 3.860 18 H 0.098 0.902 19 C 0.005 3.995 20 N -0.483 5.483 21 O -0.267 6.267 22 C 0.038 3.962 23 C 0.129 3.871 24 H 0.269 0.731 25 H 0.372 0.628 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.411 0.589 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.368 0.632 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.040 0.960 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 -16.122 -6.410 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.368 5.368 14 C 0.414 3.586 15 O -0.523 6.523 16 N -0.376 5.376 17 C 0.032 3.968 18 H 0.116 0.884 19 C -0.125 4.125 20 N -0.155 5.155 21 O -0.274 6.274 22 C -0.042 4.042 23 C 0.005 3.995 24 H 0.078 0.922 25 H 0.221 0.779 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.249 0.751 31 H 0.115 0.885 32 H 0.153 0.847 33 H 0.185 0.815 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.919 -15.982 -6.075 17.122 hybrid contribution -0.534 1.504 -0.653 1.724 sum 0.386 -14.478 -6.728 15.969 Atomic orbital electron populations 1.69853 1.07221 1.28364 1.50068 1.25828 0.95705 1.02843 0.93064 0.85464 0.78737 0.78674 0.78197 1.20148 1.21104 1.18934 1.21807 0.94000 0.91231 1.52445 0.91217 1.19935 0.87217 0.93158 0.80612 1.86096 1.51392 1.56788 1.45266 1.22641 0.97197 0.93729 1.01312 1.22123 0.87209 0.95347 0.96834 1.47872 1.24544 1.08675 1.55745 1.15721 0.81161 0.82639 0.79117 1.90855 1.41295 1.64579 1.55604 1.44938 1.28833 1.03509 1.60290 1.22217 0.85857 0.94619 0.94098 0.88420 1.24053 1.03945 0.89536 0.94934 1.69813 1.02966 1.05483 1.37255 1.91554 1.25942 1.18980 1.90970 1.23648 0.99182 0.81697 0.99636 1.22649 1.00052 0.77684 0.99104 0.92216 0.77932 0.89776 0.89102 0.91139 0.88818 0.75134 0.88504 0.84662 0.81522 0.93023 0.88768 0.94133 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.23 10.69 21.45 0.23 -50.00 16 2 C 0.03 1.39 5.29 84.65 0.45 1.83 16 3 Si 0.96 41.63 29.54 68.60 2.03 43.65 16 4 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.56 -28.76 8.28 25.60 0.21 -28.55 16 8 H 0.07 3.47 7.79 -2.91 -0.02 3.44 16 9 C 0.23 11.08 0.88 -10.05 -0.01 11.07 16 10 O -0.59 -30.24 13.16 -148.98 -1.96 -32.20 16 11 C -0.11 -4.08 6.14 31.88 0.20 -3.88 16 12 C 0.11 3.34 6.15 86.73 0.53 3.87 16 13 N -0.63 -25.35 3.33 -829.78 -2.76 -28.11 16 14 C 0.71 27.89 8.49 179.06 1.52 29.41 16 15 O -0.64 -30.80 16.27 -3.99 -0.06 -30.86 16 16 N -0.72 -19.66 4.95 -453.29 -2.25 -21.91 16 17 C 0.14 3.27 3.41 45.94 0.16 3.43 16 18 H 0.10 2.52 7.61 -2.39 -0.02 2.50 16 19 C 0.01 0.08 7.48 86.43 0.65 0.72 16 20 N -0.48 -8.34 8.55 -179.92 -1.54 -9.88 16 21 O -0.27 -6.61 12.64 -53.99 -0.68 -7.29 16 22 C 0.04 1.00 7.73 72.37 0.56 1.56 16 23 C 0.13 6.31 5.38 86.85 0.47 6.78 16 24 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 25 H 0.37 20.20 7.57 -74.06 -0.56 19.64 16 26 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.09 3.07 8.04 -2.39 -0.02 3.05 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.41 9.07 7.56 -92.71 -0.70 8.37 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.14 1.39 7.99 -2.39 -0.02 1.37 16 33 H 0.37 4.22 9.09 -89.70 -0.82 3.41 16 34 H 0.05 1.58 7.94 -2.39 -0.02 1.56 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.04 2.07 8.03 -2.39 -0.02 2.05 16 37 H 0.04 2.47 7.32 -2.39 -0.02 2.45 16 Total: -1.00 -68.35 307.62 -3.23 -71.58 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -0.96 Total: 38.77 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 4.73 Total: 26.25 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -6.31 Total: -109.90 kcal Atomic # 8 Polarization: -67.65 SS G_CDS: -2.71 Total: -70.36 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -68.35 -3.23 -71.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.429 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds