Wall clock time and date at job start Mon Mar 30 2020 01:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46974 * 2 1 4 4 C 1.53000 * 109.46827 * 240.00528 * 2 1 3 5 5 N 1.46507 * 109.46779 * 184.99691 * 4 2 1 6 6 C 1.46493 * 120.00256 * 269.99839 * 5 4 2 7 7 C 1.34779 * 119.99507 * 89.99806 * 5 4 2 8 8 O 1.21272 * 120.00418 * 0.02562 * 7 5 4 9 9 C 1.50702 * 119.99481 * 179.97438 * 7 5 4 10 10 H 1.09000 * 110.62066 * 321.36784 * 9 7 5 11 11 C 1.54085 * 110.56545 * 84.19200 * 9 7 5 12 12 O 1.45698 * 104.00910 * 118.57274 * 11 9 7 13 13 C 1.33773 * 109.47999 * 359.97438 * 12 11 9 14 14 O 1.21506 * 123.07197 * 180.02562 * 13 12 11 15 15 N 1.34007 * 113.85264 * 0.02562 * 13 12 11 16 16 N 1.46498 * 109.47216 * 120.00348 * 2 1 3 17 17 C 1.36935 * 119.99708 * 275.00011 * 16 2 1 18 18 H 1.08002 * 120.00031 * 359.97438 * 17 16 2 19 19 C 1.38814 * 120.00065 * 179.97438 * 17 16 2 20 20 N 1.31622 * 119.99574 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00361 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47318 * 90.00081 * 21 19 17 23 23 H 1.48500 * 109.47655 * 210.00333 * 21 19 17 24 24 H 1.48510 * 109.47384 * 330.00258 * 21 19 17 25 25 H 1.09000 * 109.46963 * 299.99875 * 1 2 3 26 26 H 1.09000 * 109.47149 * 60.00084 * 1 2 3 27 27 H 1.08994 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47583 * 65.00019 * 4 2 1 29 29 H 1.09001 * 109.47080 * 304.99617 * 4 2 1 30 30 H 1.09006 * 109.47066 * 270.00320 * 6 5 4 31 31 H 1.08998 * 109.47142 * 29.99723 * 6 5 4 32 32 H 1.08997 * 109.47245 * 150.00186 * 6 5 4 33 33 H 1.08999 * 110.52008 * 237.20533 * 11 9 7 34 34 H 1.09000 * 110.51984 * 359.94142 * 11 9 7 35 35 H 0.96993 * 125.55581 * 180.26652 * 15 13 12 36 36 H 0.96996 * 120.00035 * 94.99853 * 16 2 1 37 37 H 0.97005 * 119.99796 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8986 -0.6117 8 8 3.3852 -2.7766 -0.1397 9 6 5.5777 -2.0069 -0.5519 10 1 6.0262 -1.6379 -1.4742 11 6 6.1280 -1.2364 0.6637 12 8 6.7815 -2.2625 1.4654 13 6 6.6581 -3.4484 0.8588 14 8 7.1142 -4.4777 1.3160 15 7 5.9854 -3.3974 -0.2991 16 7 2.0184 -0.6907 1.1961 17 6 2.1492 -0.0076 2.3757 18 1 1.8927 1.0404 2.4241 19 6 2.6114 -0.6621 3.5092 20 7 2.9244 -1.9391 3.4500 21 14 2.7905 0.2699 5.1181 22 1 1.5227 0.1797 5.8862 23 1 3.8947 -0.3239 5.9140 24 1 3.0964 1.6949 4.8334 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7516 -0.1582 -2.1371 29 1 1.6054 -1.7197 -1.2953 30 1 4.5424 0.0095 -2.8075 31 1 3.8090 1.1867 -1.6919 32 1 5.2722 0.2954 -1.2093 33 1 6.8491 -0.4839 0.3446 34 1 5.3147 -0.7745 1.2234 35 1 5.7946 -4.1547 -0.8743 36 1 2.2491 -1.6318 1.1525 37 1 3.2471 -2.3966 4.2422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700745708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:52 Heat of formation + Delta-G solvation = -78.725390 kcal Electronic energy + Delta-G solvation = -22505.775087 eV Core-core repulsion = 19091.661223 eV Total energy + Delta-G solvation = -3414.113864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.52032 -39.37560 -36.83299 -36.13955 -34.61593 -34.28718 -32.03605 -29.81889 -28.60110 -27.15009 -25.94337 -23.91921 -23.43219 -22.12875 -20.26891 -19.22399 -17.99945 -17.62033 -17.11505 -16.68063 -15.97930 -15.47548 -15.15062 -14.65892 -14.29858 -13.96928 -13.77061 -13.59800 -13.23273 -13.02575 -13.01119 -12.50843 -12.28545 -12.01595 -11.97166 -11.49280 -11.28555 -10.82656 -10.68077 -10.53904 -10.43367 -10.42977 -10.08178 -9.94670 -9.56226 -9.00311 -8.85635 -8.30148 -6.87341 -5.65179 -2.96780 2.71388 2.75440 3.09664 3.22599 3.45834 3.50372 3.54986 3.81499 4.27484 4.46915 4.63597 4.67613 5.04736 5.20254 5.28932 5.31625 5.44493 5.59233 5.62406 5.70107 5.81736 5.94288 5.98898 6.20747 6.29213 6.59039 6.71334 6.82466 6.91988 7.06399 7.46179 7.57724 7.74768 8.31389 8.44226 8.53523 9.63222 10.24043 10.61786 11.54040 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.009461 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.962548 B = 2958.698863 C = 4343.885851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.044 0.956 4 C 0.110 3.890 5 N -0.604 5.604 6 C 0.078 3.922 7 C 0.509 3.491 8 O -0.492 6.492 9 C 0.081 3.919 10 H 0.116 0.884 11 C 0.055 3.945 12 O -0.316 6.316 13 C 0.657 3.343 14 O -0.527 6.527 15 N -0.712 5.712 16 N -0.723 5.723 17 C -0.248 4.248 18 H 0.065 0.935 19 C -0.008 4.008 20 N -0.915 5.915 21 Si 0.897 3.103 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.284 1.284 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.435 0.565 36 H 0.397 0.603 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.538 5.917 -15.660 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.062 0.938 4 C -0.013 4.013 5 N -0.339 5.339 6 C -0.065 4.065 7 C 0.294 3.706 8 O -0.364 6.364 9 C -0.029 4.029 10 H 0.133 0.867 11 C -0.021 4.021 12 O -0.225 6.225 13 C 0.410 3.590 14 O -0.412 6.412 15 N -0.383 5.383 16 N -0.369 5.369 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.206 4.206 20 N -0.562 5.562 21 Si 0.728 3.272 22 H -0.219 1.219 23 H -0.217 1.217 24 H -0.210 1.210 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.278 0.722 36 H 0.235 0.765 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.609 5.172 -14.671 16.224 hybrid contribution -0.243 0.186 0.601 0.675 sum 4.366 5.358 -14.070 15.676 Atomic orbital electron populations 1.22418 0.99111 1.01004 0.99986 1.20642 0.92096 0.95560 0.87448 0.93761 1.21901 0.78591 1.02310 0.98506 1.47557 1.07072 1.20691 1.58571 1.21783 0.95521 0.91575 0.97652 1.20251 0.89239 0.82644 0.78515 1.90774 1.63368 1.39428 1.42809 1.22274 0.94794 0.84574 1.01250 0.86681 1.24303 0.98886 0.89517 0.89377 1.87293 1.71574 1.17422 1.46212 1.18393 0.77632 0.83709 0.79288 1.91037 1.54214 1.27806 1.68133 1.45603 1.58353 1.09538 1.24856 1.42729 1.77795 1.11671 1.04691 1.19147 1.37474 0.93631 0.87682 0.91705 1.24750 1.02306 0.95841 0.97663 1.69713 1.49636 1.08249 1.28586 0.86369 0.77359 0.78691 0.84774 1.21894 1.21749 1.20951 0.92584 0.94625 0.93406 0.90787 0.90212 0.92790 0.90570 0.91626 0.87227 0.85438 0.72188 0.76489 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.15 2.85 3.20 -67.93 -0.22 2.63 16 3 H 0.04 0.80 8.08 -51.93 -0.42 0.39 16 4 C 0.11 1.63 5.14 -4.04 -0.02 1.61 16 5 N -0.60 -8.32 2.77 -181.57 -0.50 -8.82 16 6 C 0.08 0.68 9.92 59.84 0.59 1.27 16 7 C 0.51 8.44 6.07 -10.98 -0.07 8.37 16 8 O -0.49 -10.76 13.91 5.56 0.08 -10.69 16 9 C 0.08 1.07 3.17 -68.19 -0.22 0.86 16 10 H 0.12 0.94 7.20 -51.93 -0.37 0.56 16 11 C 0.05 0.80 6.99 37.72 0.26 1.06 16 12 O -0.32 -6.04 11.09 -37.84 -0.42 -6.45 16 13 C 0.66 12.77 9.16 53.71 0.49 13.26 16 14 O -0.53 -11.97 18.04 -19.11 -0.34 -12.31 16 15 N -0.71 -10.79 5.65 -59.36 -0.34 -11.13 16 16 N -0.72 -17.65 4.52 -53.42 -0.24 -17.89 16 17 C -0.25 -6.72 9.93 -15.06 -0.15 -6.87 16 18 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -28.31 13.06 55.49 0.72 -27.58 16 21 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.07 0.48 5.94 -51.93 -0.31 0.18 16 33 H 0.11 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.13 2.33 7.72 -51.93 -0.40 1.93 16 35 H 0.44 5.70 8.96 -40.82 -0.37 5.33 16 36 H 0.40 10.74 5.02 -40.82 -0.20 10.53 16 37 H 0.25 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 311.82 15.07 4.70 4.70 Total: -1.00 -37.46 311.82 -5.39 -42.85 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.96 Total: 10.41 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 0.94 Total: 19.38 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.36 Total: -65.42 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.69 Total: -29.45 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.46 -5.39 -42.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700745708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.879 kcal (2) G-P(sol) polarization free energy of solvation -37.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds