Wall clock time and date at job start Mon Mar 30 2020 01:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46974 * 2 1 4 4 C 1.53000 * 109.46827 * 240.00528 * 2 1 3 5 5 N 1.46507 * 109.46779 * 184.99691 * 4 2 1 6 6 C 1.46493 * 120.00256 * 269.99839 * 5 4 2 7 7 C 1.34779 * 119.99507 * 89.99806 * 5 4 2 8 8 O 1.21272 * 120.00418 * 0.02562 * 7 5 4 9 9 C 1.50702 * 119.99481 * 179.97438 * 7 5 4 10 10 H 1.09000 * 110.62066 * 321.36784 * 9 7 5 11 11 C 1.54085 * 110.56545 * 84.19200 * 9 7 5 12 12 O 1.45698 * 104.00910 * 118.57274 * 11 9 7 13 13 C 1.33773 * 109.47999 * 359.97438 * 12 11 9 14 14 O 1.21506 * 123.07197 * 180.02562 * 13 12 11 15 15 N 1.34007 * 113.85264 * 0.02562 * 13 12 11 16 16 N 1.46498 * 109.47216 * 120.00348 * 2 1 3 17 17 C 1.36935 * 119.99708 * 275.00011 * 16 2 1 18 18 H 1.08002 * 120.00031 * 359.97438 * 17 16 2 19 19 C 1.38814 * 120.00065 * 179.97438 * 17 16 2 20 20 N 1.31622 * 119.99574 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00361 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47318 * 90.00081 * 21 19 17 23 23 H 1.48500 * 109.47655 * 210.00333 * 21 19 17 24 24 H 1.48510 * 109.47384 * 330.00258 * 21 19 17 25 25 H 1.09000 * 109.46963 * 299.99875 * 1 2 3 26 26 H 1.09000 * 109.47149 * 60.00084 * 1 2 3 27 27 H 1.08994 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47583 * 65.00019 * 4 2 1 29 29 H 1.09001 * 109.47080 * 304.99617 * 4 2 1 30 30 H 1.09006 * 109.47066 * 270.00320 * 6 5 4 31 31 H 1.08998 * 109.47142 * 29.99723 * 6 5 4 32 32 H 1.08997 * 109.47245 * 150.00186 * 6 5 4 33 33 H 1.08999 * 110.52008 * 237.20533 * 11 9 7 34 34 H 1.09000 * 110.51984 * 359.94142 * 11 9 7 35 35 H 0.96993 * 125.55581 * 180.26652 * 15 13 12 36 36 H 0.96996 * 120.00035 * 94.99853 * 16 2 1 37 37 H 0.97005 * 119.99796 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8986 -0.6117 8 8 3.3852 -2.7766 -0.1397 9 6 5.5777 -2.0069 -0.5519 10 1 6.0262 -1.6379 -1.4742 11 6 6.1280 -1.2364 0.6637 12 8 6.7815 -2.2625 1.4654 13 6 6.6581 -3.4484 0.8588 14 8 7.1142 -4.4777 1.3160 15 7 5.9854 -3.3974 -0.2991 16 7 2.0184 -0.6907 1.1961 17 6 2.1492 -0.0076 2.3757 18 1 1.8927 1.0404 2.4241 19 6 2.6114 -0.6621 3.5092 20 7 2.9244 -1.9391 3.4500 21 14 2.7905 0.2699 5.1181 22 1 1.5227 0.1797 5.8862 23 1 3.8947 -0.3239 5.9140 24 1 3.0964 1.6949 4.8334 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7516 -0.1582 -2.1371 29 1 1.6054 -1.7197 -1.2953 30 1 4.5424 0.0095 -2.8075 31 1 3.8090 1.1867 -1.6919 32 1 5.2722 0.2954 -1.2093 33 1 6.8491 -0.4839 0.3446 34 1 5.3147 -0.7745 1.2234 35 1 5.7946 -4.1547 -0.8743 36 1 2.2491 -1.6318 1.1525 37 1 3.2471 -2.3966 4.2422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700745708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:51 Heat of formation + Delta-G solvation = -110.433826 kcal Electronic energy + Delta-G solvation = -22507.150068 eV Core-core repulsion = 19091.661223 eV Total energy + Delta-G solvation = -3415.488845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.84001 -40.66175 -38.36177 -37.60104 -36.01309 -35.66833 -33.89048 -31.18205 -30.34084 -28.11999 -27.09803 -25.71014 -24.85923 -23.52604 -21.72316 -20.49117 -19.31293 -19.23894 -18.63166 -17.99885 -17.33194 -16.95160 -16.45937 -16.33893 -15.70070 -15.53121 -15.26682 -14.99575 -14.59038 -14.35344 -14.16263 -13.84726 -13.52889 -13.33624 -13.10740 -12.95914 -12.83934 -12.68838 -12.36610 -12.14781 -12.01102 -11.88193 -11.79627 -11.57581 -11.32409 -10.92503 -10.21995 -9.45122 -8.88934 -7.83285 -5.11947 1.37333 1.43912 1.45211 1.53328 1.54353 1.76644 2.06517 2.58387 2.65116 3.15384 3.39284 3.47745 3.74578 3.97983 4.07905 4.23424 4.31085 4.44825 4.56168 4.58275 4.67669 4.74601 4.86241 4.97996 5.07786 5.11731 5.31420 5.49666 5.58006 5.68567 5.74914 6.10942 6.33209 6.48353 6.93132 7.27410 7.44509 8.29788 8.51260 9.36518 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.009461 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.962548 B = 2958.698863 C = 4343.885851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.056 0.944 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.064 3.936 7 C 0.498 3.502 8 O -0.559 6.559 9 C 0.090 3.910 10 H 0.184 0.816 11 C 0.052 3.948 12 O -0.342 6.342 13 C 0.649 3.351 14 O -0.574 6.574 15 N -0.696 5.696 16 N -0.737 5.737 17 C -0.227 4.227 18 H 0.074 0.926 19 C -0.074 4.074 20 N -0.958 5.958 21 Si 0.956 3.044 22 H -0.296 1.296 23 H -0.306 1.306 24 H -0.261 1.261 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.125 0.875 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.444 0.556 36 H 0.383 0.617 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 9.003 -18.688 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.074 0.926 4 C -0.008 4.008 5 N -0.331 5.331 6 C -0.077 4.077 7 C 0.284 3.716 8 O -0.436 6.436 9 C -0.019 4.019 10 H 0.201 0.799 11 C -0.023 4.023 12 O -0.252 6.252 13 C 0.402 3.598 14 O -0.463 6.463 15 N -0.368 5.368 16 N -0.382 5.382 17 C -0.360 4.360 18 H 0.092 0.908 19 C -0.267 4.267 20 N -0.608 5.608 21 Si 0.786 3.214 22 H -0.224 1.224 23 H -0.234 1.234 24 H -0.185 1.185 25 H 0.052 0.948 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.143 0.857 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.190 0.810 34 H 0.103 0.897 35 H 0.288 0.712 36 H 0.219 0.781 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.013 8.388 -17.799 20.305 hybrid contribution -0.499 -0.615 1.404 1.612 sum 4.514 7.773 -16.395 18.698 Atomic orbital electron populations 1.22283 0.98053 1.00248 1.01119 1.21011 0.92746 0.95946 0.86891 0.92602 1.21819 0.79417 1.01167 0.98383 1.47691 1.07146 1.20950 1.57329 1.22229 0.95424 0.90274 0.99766 1.20914 0.90496 0.82564 0.77657 1.90755 1.65034 1.42038 1.45776 1.22625 0.92851 0.83065 1.03324 0.79884 1.24618 0.99242 0.89662 0.88739 1.87241 1.71935 1.18186 1.47819 1.18615 0.77849 0.83330 0.79986 1.90979 1.56377 1.29419 1.69528 1.45547 1.56725 1.11146 1.23365 1.43006 1.77951 1.11336 1.05881 1.19541 1.34094 0.93865 0.88501 0.90785 1.25430 1.03912 0.96502 1.00849 1.69927 1.52498 1.10114 1.28299 0.85397 0.76297 0.78580 0.81083 1.22415 1.23387 1.18550 0.94842 0.90017 0.95130 0.85663 0.92772 0.88906 0.89555 0.90034 0.80994 0.89681 0.71153 0.78105 0.95163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.49 71.98 0.68 -4.43 16 2 C 0.14 5.01 3.20 44.99 0.14 5.16 16 3 H 0.06 1.84 8.08 -2.38 -0.02 1.82 16 4 C 0.12 3.10 5.14 86.38 0.44 3.54 16 5 N -0.60 -14.51 2.77 -846.76 -2.35 -16.86 16 6 C 0.06 0.75 9.92 127.77 1.27 2.02 16 7 C 0.50 15.79 6.07 87.66 0.53 16.32 16 8 O -0.56 -25.09 13.91 -3.00 -0.04 -25.13 16 9 C 0.09 2.13 3.17 44.50 0.14 2.27 16 10 H 0.18 1.86 7.20 -2.39 -0.02 1.84 16 11 C 0.05 1.41 6.99 72.35 0.51 1.91 16 12 O -0.34 -13.20 11.09 -47.33 -0.52 -13.72 16 13 C 0.65 25.71 9.16 129.91 1.19 26.90 16 14 O -0.57 -27.20 18.04 19.67 0.35 -26.84 16 15 N -0.70 -20.60 5.65 -573.41 -3.24 -23.84 16 16 N -0.74 -36.07 4.52 -322.93 -1.46 -37.53 16 17 C -0.23 -12.33 9.93 84.03 0.83 -11.50 16 18 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 19 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.96 -61.94 13.06 21.65 0.28 -61.66 16 21 Si 0.96 47.40 29.55 68.60 2.03 49.43 16 22 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 23 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.13 2.09 8.07 -2.39 -0.02 2.07 16 29 H 0.05 1.76 7.42 -2.39 -0.02 1.75 16 30 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.09 0.90 8.07 -2.39 -0.02 0.88 16 32 H 0.08 0.71 5.94 -2.39 -0.01 0.70 16 33 H 0.17 2.43 8.11 -2.39 -0.02 2.41 16 34 H 0.08 3.10 7.72 -2.39 -0.02 3.08 16 35 H 0.44 11.38 8.96 -92.71 -0.83 10.55 16 36 H 0.38 21.31 5.02 -92.71 -0.47 20.85 16 37 H 0.24 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -89.97 311.82 1.06 -88.91 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.19 Total: 28.92 kcal Atomic # 6 Polarization: 32.12 SS G_CDS: 6.21 Total: 38.32 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -6.77 Total: -139.88 kcal Atomic # 8 Polarization: -65.49 SS G_CDS: -0.21 Total: -65.70 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -89.97 1.06 -88.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700745708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.524 kcal (2) G-P(sol) polarization free energy of solvation -89.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds