Wall clock time and date at job start Mon Mar 30 2020 01:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46800 * 2 1 4 4 C 1.52994 * 109.47161 * 120.00353 * 2 1 3 5 5 N 1.46504 * 109.47220 * 174.99996 * 4 2 1 6 6 C 1.46504 * 119.99704 * 269.99802 * 5 4 2 7 7 C 1.34771 * 119.99829 * 89.99889 * 5 4 2 8 8 O 1.21277 * 120.00490 * 359.97438 * 7 5 4 9 9 C 1.50706 * 119.99791 * 180.02562 * 7 5 4 10 10 H 1.09003 * 110.62112 * 321.36693 * 9 7 5 11 11 C 1.54092 * 110.56509 * 84.18775 * 9 7 5 12 12 O 1.45707 * 104.00725 * 118.57262 * 11 9 7 13 13 C 1.33768 * 109.47544 * 0.02562 * 12 11 9 14 14 O 1.21515 * 123.07086 * 180.02562 * 13 12 11 15 15 N 1.33999 * 113.85991 * 359.97438 * 13 12 11 16 16 N 1.46498 * 109.46902 * 240.00516 * 2 1 3 17 17 C 1.36938 * 120.00388 * 84.99778 * 16 2 1 18 18 H 1.07997 * 119.99554 * 359.97438 * 17 16 2 19 19 C 1.38809 * 119.99854 * 179.97438 * 17 16 2 20 20 N 1.31620 * 119.99571 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00353 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47022 * 90.00009 * 21 19 17 23 23 H 1.48498 * 109.47253 * 209.99890 * 21 19 17 24 24 H 1.48499 * 109.47056 * 330.00080 * 21 19 17 25 25 H 1.09005 * 109.47220 * 299.99945 * 1 2 3 26 26 H 1.09001 * 109.47318 * 59.99429 * 1 2 3 27 27 H 1.08996 * 109.47298 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47468 * 54.99608 * 4 2 1 29 29 H 1.09000 * 109.46963 * 294.99847 * 4 2 1 30 30 H 1.08991 * 109.46969 * 269.99515 * 6 5 4 31 31 H 1.08999 * 109.46810 * 30.00092 * 6 5 4 32 32 H 1.09006 * 109.46659 * 149.99841 * 6 5 4 33 33 H 1.08997 * 110.52567 * 237.20662 * 11 9 7 34 34 H 1.09006 * 110.52110 * 359.94326 * 11 9 7 35 35 H 0.96999 * 125.56585 * 179.97438 * 15 13 12 36 36 H 0.97005 * 119.99869 * 264.99612 * 16 2 1 37 37 H 0.96998 * 119.99896 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1258 -1.9920 0.5610 7 6 4.2675 0.1491 1.7155 8 8 3.7495 1.1142 2.2362 9 6 5.7695 0.0412 1.6547 10 1 6.0876 -0.9878 1.8226 11 6 6.2947 0.5559 0.3005 12 8 7.1495 1.6804 0.6582 13 6 7.1531 1.8329 1.9871 14 8 7.7872 2.7013 2.5532 15 7 6.3927 0.9413 2.6371 16 7 2.0182 -0.6905 -1.1962 17 6 2.1490 -0.0073 -2.3758 18 1 1.8917 1.0404 -2.4243 19 6 2.6122 -0.6616 -3.5091 20 7 2.7383 -0.0048 -4.6427 21 14 3.0578 -2.4737 -3.4249 22 1 1.8611 -3.2931 -3.7442 23 1 4.1334 -2.7651 -4.4065 24 1 3.5331 -2.8036 -2.0573 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6053 -1.7198 1.2951 29 1 1.7516 -0.1584 2.1369 30 1 4.2822 -2.7688 1.3094 31 1 3.4756 -2.3722 -0.2269 32 1 5.0851 -1.7021 0.1322 33 1 6.8727 -0.2180 -0.2043 34 1 5.4687 0.8886 -0.3282 35 1 6.2732 0.8962 3.5986 36 1 2.2490 -1.6317 -1.1527 37 1 3.0616 -0.4620 -5.4347 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700745709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:55 Heat of formation + Delta-G solvation = -75.135494 kcal Electronic energy + Delta-G solvation = -22041.014742 eV Core-core repulsion = 18627.056547 eV Total energy + Delta-G solvation = -3413.958194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.88355 -39.69367 -37.19740 -36.71804 -34.80622 -34.55967 -32.23436 -30.24328 -29.48221 -27.20576 -26.24963 -24.20628 -23.27372 -22.47234 -20.56558 -19.61506 -18.30550 -17.79951 -17.78852 -17.05090 -16.36124 -15.70467 -15.48949 -14.87868 -14.60822 -14.30580 -14.07871 -13.90837 -13.52096 -13.47979 -13.11040 -12.77802 -12.46816 -12.35265 -12.07065 -11.74432 -11.57962 -11.06678 -10.91254 -10.80793 -10.77522 -10.71498 -10.37565 -10.18274 -9.67763 -9.34171 -9.08310 -8.58242 -7.38936 -5.86761 -3.23434 2.33229 2.41393 2.68763 2.92455 3.10217 3.24618 3.32322 3.47536 3.93082 4.15306 4.43964 4.44375 4.88799 4.99230 5.02724 5.17886 5.23368 5.38505 5.39415 5.45220 5.53056 5.76617 5.89367 6.03243 6.05589 6.35054 6.45269 6.58938 6.67911 6.91796 7.10352 7.28242 7.89591 7.94816 8.05334 8.31078 9.08568 9.79818 9.99514 11.31575 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.006527 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.953333 B = 4288.687723 C = 4938.078519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.061 0.939 4 C 0.107 3.893 5 N -0.591 5.591 6 C 0.067 3.933 7 C 0.505 3.495 8 O -0.523 6.523 9 C 0.077 3.923 10 H 0.123 0.877 11 C 0.053 3.947 12 O -0.320 6.320 13 C 0.652 3.348 14 O -0.523 6.523 15 N -0.711 5.711 16 N -0.745 5.745 17 C -0.241 4.241 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.881 3.119 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.275 1.275 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.438 0.562 36 H 0.357 0.643 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -7.899 13.341 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.079 0.921 4 C -0.016 4.016 5 N -0.323 5.323 6 C -0.076 4.076 7 C 0.290 3.710 8 O -0.398 6.398 9 C -0.033 4.033 10 H 0.141 0.859 11 C -0.022 4.022 12 O -0.229 6.229 13 C 0.405 3.595 14 O -0.408 6.408 15 N -0.384 5.384 16 N -0.389 5.389 17 C -0.371 4.371 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.579 5.579 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.202 1.202 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.281 0.719 36 H 0.191 0.809 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.044 -6.596 13.353 15.432 hybrid contribution -0.009 -1.683 0.107 1.687 sum 4.035 -8.279 13.460 16.309 Atomic orbital electron populations 1.22338 0.98097 1.00939 1.00984 1.20630 0.92353 0.96556 0.85535 0.92129 1.21973 0.78028 1.01576 1.00019 1.47608 1.07086 1.20896 1.56747 1.22165 0.99606 0.87529 0.98273 1.20386 0.88337 0.83033 0.79282 1.90745 1.74181 1.30487 1.44436 1.22349 0.92748 0.97459 0.90773 0.85928 1.24356 0.95284 0.87936 0.94659 1.87315 1.64281 1.49663 1.21664 1.18449 0.79171 0.81250 0.80657 1.91069 1.47531 1.35307 1.66909 1.45650 1.49156 1.33488 1.10083 1.42815 1.79884 1.09082 1.07158 1.19065 1.36888 0.95637 0.85488 0.89300 1.24682 1.01674 0.97252 0.95557 1.69696 1.52500 1.35444 1.00268 0.86717 0.78255 0.87089 0.76756 1.21248 1.21777 1.20152 0.93920 0.91959 0.93513 0.90587 0.89541 0.92505 0.89201 0.91297 0.86214 0.85963 0.71910 0.80913 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.49 37.16 0.35 -2.25 16 2 C 0.16 2.78 3.20 -67.94 -0.22 2.56 16 3 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 4 C 0.11 1.46 5.05 -4.04 -0.02 1.44 16 5 N -0.59 -7.60 2.73 -181.57 -0.50 -8.10 16 6 C 0.07 0.71 9.55 59.85 0.57 1.28 16 7 C 0.51 6.93 6.78 -10.99 -0.07 6.85 16 8 O -0.52 -9.13 16.18 5.56 0.09 -9.04 16 9 C 0.08 0.81 3.17 -68.18 -0.22 0.60 16 10 H 0.12 0.81 7.20 -51.93 -0.37 0.44 16 11 C 0.05 0.62 7.00 37.73 0.26 0.88 16 12 O -0.32 -4.84 11.09 -37.82 -0.42 -5.26 16 13 C 0.65 10.15 9.16 53.71 0.49 10.64 16 14 O -0.52 -9.90 18.04 -19.12 -0.34 -10.25 16 15 N -0.71 -8.44 5.66 -59.35 -0.34 -8.78 16 16 N -0.74 -15.19 4.37 -53.43 -0.23 -15.43 16 17 C -0.24 -6.19 10.41 -15.06 -0.16 -6.35 16 18 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -27.66 13.97 55.49 0.78 -26.89 16 21 Si 0.88 19.44 27.73 -169.99 -4.71 14.72 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -5.06 4.90 56.52 0.28 -4.78 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.88 8.07 -51.93 -0.42 0.47 16 29 H 0.09 1.17 7.42 -51.93 -0.39 0.78 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.16 3.94 -51.93 -0.20 0.96 16 32 H 0.07 0.62 5.95 -51.93 -0.31 0.32 16 33 H 0.12 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.12 1.69 7.72 -51.93 -0.40 1.29 16 35 H 0.44 4.35 8.96 -40.82 -0.37 3.98 16 36 H 0.36 6.84 3.49 -40.82 -0.14 6.69 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -34.30 306.05 -4.98 -39.28 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.82 Total: 9.44 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 0.90 Total: 15.67 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.29 Total: -59.19 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.67 Total: -24.55 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.30 -4.98 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700745709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.852 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds